RNA–Protein interactions for RNA: ENST00000334389.5

LINC00643-201, long intergenic non-protein coding RNA 643, humanhuman

TSL 2 BASIC

Gene LINC00643, Length 3,247 nt, Biotype retained intron.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643-201ENST00000334389 ZFP37Q9Y6Q3 630 aaPredicted RBP2.21□□□□□ -2.06
LINC00643-201ENST00000334389 ASTN2O75129 1339 aaPredicted RBP2.2□□□□□ -2.06
LINC00643-201ENST00000334389 SLC15A5A6NIM6 579 aa2.2□□□□□ -2.06
LINC00643-201ENST00000334389 PLA2G6O60733 806 aa2.2□□□□□ -2.06
LINC00643-201ENST00000334389 HIRAP54198 1017 aaPredicted RBP2.2□□□□□ -2.06
LINC00643-201ENST00000334389 SMAD4Q13485 552 aaKnown RBP2.2□□□□□ -2.06
LINC00643-201ENST00000334389 TCIRG1Q13488 830 aa2.2□□□□□ -2.06
LINC00643-201ENST00000334389 SKIV2LQ15477 1246 aaKnown RBP2.2□□□□□ -2.06
LINC00643-201ENST00000334389 AMIGO3Q86WK7 504 aa2.2□□□□□ -2.06
LINC00643-201ENST00000334389 ERO1BQ86YB8 467 aa2.2□□□□□ -2.06
LINC00643-201ENST00000334389 ADAMTS19Q8TE59 1207 aa2.2□□□□□ -2.06
LINC00643-201ENST00000334389 JDP2Q8WYK2 163 aa2.2□□□□□ -2.06
LINC00643-201ENST00000334389 DCPSQ96C86 337 aaKnown RBP2.2□□□□□ -2.06
LINC00643-201ENST00000334389 EPC1Q9H2F5 836 aa2.2□□□□□ -2.06
LINC00643-201ENST00000334389 MTIF3Q9H2K0 278 aaKnown RBP2.2□□□□□ -2.06
LINC00643-201ENST00000334389 EFCC1Q9HA90 598 aa2.2□□□□□ -2.06
LINC00643-201ENST00000334389 PNMA3Q9UL41 463 aa2.2□□□□□ -2.06
LINC00643-201ENST00000334389 MAFFQ9ULX9 164 aa2.2□□□□□ -2.06
LINC00643-201ENST00000334389 DNMT3AQ9Y6K1 912 aaPredicted RBP2.2□□□□□ -2.06
LINC00643-201ENST00000334389 ADAMTS20P59510 1910 aa2.2□□□□□ -2.06
LINC00643-201ENST00000334389 RBM47A0AV96 593 aaKnown RBP2.2□□□□□ -2.06
LINC00643-201ENST00000334389 RNMTO43148 476 aaKnown RBP2.2□□□□□ -2.06
LINC00643-201ENST00000334389 GTPBP6O43824 516 aaPredicted RBP2.2□□□□□ -2.06
LINC00643-201ENST00000334389 MICAL2O94851 1124 aa2.2□□□□□ -2.06
LINC00643-201ENST00000334389 CELF2O95319 508 aaKnown RBP2.2□□□□□ -2.06
LINC00643-201ENST00000334389 CD4P01730 458 aa2.2□□□□□ -2.06
LINC00643-201ENST00000334389 FDX1P10109 184 aa2.2□□□□□ -2.06
LINC00643-201ENST00000334389 HOXD8P13378 290 aaPredicted RBP2.2□□□□□ -2.06
LINC00643-201ENST00000334389 CCL5P13501 91 aa2.2□□□□□ -2.06
LINC00643-201ENST00000334389 MLLT3P42568 568 aaPredicted RBP2.2□□□□□ -2.06
LINC00643-201ENST00000334389 FKBP8Q14318 412 aa2.2□□□□□ -2.06
LINC00643-201ENST00000334389 NBPF6Q5VWK0 638 aa2.2□□□□□ -2.06
LINC00643-201ENST00000334389 KANK3Q6NY19 840 aa2.2□□□□□ -2.06
LINC00643-201ENST00000334389 LAPTM4BQ86VI4 370 aa2.2□□□□□ -2.06
LINC00643-201ENST00000334389 CNBD1Q8NA66 436 aa2.2□□□□□ -2.06
LINC00643-201ENST00000334389 GAS2L2Q8NHY3 880 aa2.2□□□□□ -2.06
LINC00643-201ENST00000334389 WHAMMQ8TF30 809 aa2.2□□□□□ -2.06
LINC00643-201ENST00000334389 NBPF4Q96M43 638 aa2.2□□□□□ -2.06
LINC00643-201ENST00000334389 ISCA1Q9BUE6 129 aa2.2□□□□□ -2.06
LINC00643-201ENST00000334389 DDX23Q9BUQ8 820 aaKnown RBP2.2□□□□□ -2.06
LINC00643-201ENST00000334389 ZNF341Q9BYN7 854 aa2.2□□□□□ -2.06
LINC00643-201ENST00000334389 NBPF3Q9H094 633 aa2.2□□□□□ -2.06
LINC00643-201ENST00000334389 DDX41Q9UJV9 622 aaKnown RBP2.2□□□□□ -2.06
LINC00643-201ENST00000334389 HELZP42694 1942 aaKnown RBP2.2□□□□□ -2.06
LINC00643-201ENST00000334389 NYNRINQ9P2P1 1898 aaKnown RBP2.2□□□□□ -2.06
LINC00643-201ENST00000334389 MYH1P12882 1939 aa2.19□□□□□ -2.06
LINC00643-201ENST00000334389 A0A0G2JLW4 131 aa2.19□□□□□ -2.06
LINC00643-201ENST00000334389 SMIM22K7EJ46 135 aa2.19□□□□□ -2.06
LINC00643-201ENST00000334389 MAPK4P31152 587 aa2.19□□□□□ -2.06
LINC00643-201ENST00000334389 HOXC8P31273 242 aa2.19□□□□□ -2.06
LINC00643-201ENST00000334389 LMNB2Q03252 620 aa2.19□□□□□ -2.06
LINC00643-201ENST00000334389 CCSAPQ6IQ19 270 aaPredicted RBP2.19□□□□□ -2.06
LINC00643-201ENST00000334389 MAMDC4Q6UXC1 1216 aa2.19□□□□□ -2.06
LINC00643-201ENST00000334389 PPP1R42Q7Z4L9 355 aa2.19□□□□□ -2.06
LINC00643-201ENST00000334389 CCDC105Q8IYK2 499 aa2.19□□□□□ -2.06
LINC00643-201ENST00000334389 NGEFQ8N5V2 710 aa2.19□□□□□ -2.06
LINC00643-201ENST00000334389 KLHDC9Q8NEP7 349 aa2.19□□□□□ -2.06
LINC00643-201ENST00000334389 PRSS33Q8NF86 280 aa2.19□□□□□ -2.06
LINC00643-201ENST00000334389 FAM212AQ96EL1 285 aa2.19□□□□□ -2.06
LINC00643-201ENST00000334389 UHRF1Q96T88 793 aaPredicted RBP2.19□□□□□ -2.06
LINC00643-201ENST00000334389 FAM117AQ9C073 453 aa2.19□□□□□ -2.06
LINC00643-201ENST00000334389 GOLGA2P5Q9HBQ8 144 aa2.19□□□□□ -2.06
LINC00643-201ENST00000334389 GJD2Q9UKL4 321 aa2.19□□□□□ -2.06
LINC00643-201ENST00000334389 HCFC2Q9Y5Z7 792 aa2.19□□□□□ -2.06
LINC00643-201ENST00000334389 CHD8Q9HCK8 2581 aa2.19□□□□□ -2.06
LINC00643-201ENST00000334389 GRXCR2A6NFK2 248 aa2.19□□□□□ -2.06
LINC00643-201ENST00000334389 SLC30A4O14863 429 aa2.19□□□□□ -2.06
LINC00643-201ENST00000334389 ENTPD3O75355 529 aa2.19□□□□□ -2.06
LINC00643-201ENST00000334389 ADRB1P08588 477 aa2.19□□□□□ -2.06
LINC00643-201ENST00000334389 IL13P35225 146 aa2.19□□□□□ -2.06
LINC00643-201ENST00000334389 ERVK-21P61565 698 aa2.19□□□□□ -2.06
LINC00643-201ENST00000334389 HTRA4P83105 476 aaPredicted RBP2.19□□□□□ -2.06
LINC00643-201ENST00000334389 RCSD1Q6JBY9 416 aa2.19□□□□□ -2.06
LINC00643-201ENST00000334389 DEFB123Q8N688 67 aa2.19□□□□□ -2.06
LINC00643-201ENST00000334389 NETO1Q8TDF5 533 aa2.19□□□□□ -2.06
LINC00643-201ENST00000334389 SUSD6Q92537 303 aa2.19□□□□□ -2.06
LINC00643-201ENST00000334389 XRN2Q9H0D6 950 aaKnown RBP eCLIP2.19□□□□□ -2.06
LINC00643-201ENST00000334389 TBX21Q9UL17 535 aa2.19□□□□□ -2.06
LINC00643-201ENST00000334389 FSCN2O14926 492 aa2.19□□□□□ -2.06
LINC00643-201ENST00000334389 TDGF1P13385 188 aa2.19□□□□□ -2.06
LINC00643-201ENST00000334389 GLULP15104 373 aa2.19□□□□□ -2.06
LINC00643-201ENST00000334389 ICAM3P32942 547 aa2.19□□□□□ -2.06
LINC00643-201ENST00000334389 EIF4G2P78344 907 aaKnown RBP eCLIP2.19□□□□□ -2.06
LINC00643-201ENST00000334389 SNAPC2Q13487 334 aa2.19□□□□□ -2.06
LINC00643-201ENST00000334389 SMAD2Q15796 467 aaKnown RBP2.19□□□□□ -2.06
LINC00643-201ENST00000334389 CSPP1Q1MSJ5 1256 aa2.19□□□□□ -2.06
LINC00643-201ENST00000334389 KIF4BQ2VIQ3 1234 aa2.19□□□□□ -2.06
LINC00643-201ENST00000334389 PKDCCQ504Y2 493 aa2.19□□□□□ -2.06
LINC00643-201ENST00000334389 ARSIQ5FYB1 569 aa2.19□□□□□ -2.06
LINC00643-201ENST00000334389 MSL1Q68DK7 614 aa2.19□□□□□ -2.06
LINC00643-201ENST00000334389 CYP4F22Q6NT55 531 aa2.19□□□□□ -2.06
LINC00643-201ENST00000334389 GPAT2Q6NUI2 795 aa2.19□□□□□ -2.06
LINC00643-201ENST00000334389 TEPSINQ96N21 525 aa2.19□□□□□ -2.06
LINC00643-201ENST00000334389 RTP3Q9BQQ7 232 aa2.19□□□□□ -2.06
LINC00643-201ENST00000334389 ANKRD2Q9GZV1 360 aa2.19□□□□□ -2.06
LINC00643-201ENST00000334389 MKRN1Q9UHC7 482 aaKnown RBP2.19□□□□□ -2.06
LINC00643-201ENST00000334389 DNAH6Q9C0G6 4158 aa2.19□□□□□ -2.06
LINC00643-201ENST00000334389 PLIN4Q96Q06 1357 aa2.18□□□□□ -2.06
LINC00643-201ENST00000334389 MYH2Q9UKX2 1941 aa2.18□□□□□ -2.06
LINC00643-201ENST00000334389 H0Y626 953 aa2.18□□□□□ -2.06
Retrieved 100 of 20,778 RNA–protein pairs in 51.1 ms