RNA–Protein interactions for RNA: ENST00000323701.10

USP39-201, Transcript of ubiquitin specific peptidase 39, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP39, Length 2,177 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-201ENST00000323701 SLC44A5Q8NCS7 719 aa21.57■■□□□ 1.04
USP39-201ENST00000323701 SLC12A7Q9Y666 1083 aa21.57■■□□□ 1.04
USP39-201ENST00000323701 DDX49Q9Y6V7 483 aaKnown RBP21.57■■□□□ 1.04
USP39-201ENST00000323701 ZNF646O15015 1829 aaPredicted RBP21.57■■□□□ 1.04
USP39-201ENST00000323701 ORC4O43929 436 aa21.57■■□□□ 1.04
USP39-201ENST00000323701 GUCY1B3Q02153 619 aa21.57■■□□□ 1.04
USP39-201ENST00000323701 R3HDM1Q15032 1099 aaKnown RBP21.57■■□□□ 1.04
USP39-201ENST00000323701 NTRK3Q16288 839 aa21.57■■□□□ 1.04
USP39-201ENST00000323701 OTUD7BQ6GQQ9 843 aa21.57■■□□□ 1.04
USP39-201ENST00000323701 USP48Q86UV5 1035 aa21.57■■□□□ 1.04
USP39-201ENST00000323701 UBAC1Q9BSL1 405 aa21.57■■□□□ 1.04
USP39-201ENST00000323701 NAV1Q8NEY1 1877 aa21.57■■□□□ 1.04
USP39-201ENST00000323701 FLT1P17948 1338 aa21.57■■□□□ 1.04
USP39-201ENST00000323701 CCDC69A6NI79 296 aa21.56■■□□□ 1.04
USP39-201ENST00000323701 YDJCA8MPS7 323 aa21.56■■□□□ 1.04
USP39-201ENST00000323701 KIAA2012Q0VF49 1180 aa21.56■■□□□ 1.04
USP39-201ENST00000323701 DACT2Q5SW24 774 aa21.56■■□□□ 1.04
USP39-201ENST00000323701 ILDR1Q86SU0 546 aaPredicted RBP21.56■■□□□ 1.04
USP39-201ENST00000323701 PHKBQ93100 1093 aa21.56■■□□□ 1.04
USP39-201ENST00000323701 AIFM3Q96NN9 605 aa21.56■■□□□ 1.04
USP39-201ENST00000323701 ZSCAN10Q96SZ4 725 aaPredicted RBP21.56■■□□□ 1.04
USP39-201ENST00000323701 SUGT1Q9Y2Z0 365 aa21.55■■□□□ 1.04
USP39-201ENST00000323701 KIF13BQ9NQT8 1826 aa21.55■■□□□ 1.04
USP39-201ENST00000323701 GOLGA8AA7E2F4 631 aa21.55■■□□□ 1.04
USP39-201ENST00000323701 CPLX1O14810 134 aa21.55■■□□□ 1.04
USP39-201ENST00000323701 SART3Q15020 963 aaKnown RBP21.55■■□□□ 1.04
USP39-201ENST00000323701 KIAA0825Q8IV33 1275 aa21.55■■□□□ 1.04
USP39-201ENST00000323701 ORC3Q9UBD5 711 aaPredicted RBP21.55■■□□□ 1.04
USP39-201ENST00000323701 DDX60LQ5H9U9 1706 aaKnown RBP21.55■■□□□ 1.04
USP39-201ENST00000323701 COL4A5P29400 1685 aa21.54■■□□□ 1.04
USP39-201ENST00000323701 DHX16O60231 1041 aaKnown RBP21.54■■□□□ 1.04
USP39-201ENST00000323701 RESTQ13127 1097 aa21.54■■□□□ 1.04
USP39-201ENST00000323701 KLHL40Q2TBA0 621 aa21.54■■□□□ 1.04
USP39-201ENST00000323701 CMTR1Q8N1G2 835 aaKnown RBP21.54■■□□□ 1.04
USP39-201ENST00000323701 H3BQV1 296 aa21.54■■□□□ 1.04
USP39-201ENST00000323701 FIBPO43427 364 aa21.54■■□□□ 1.04
USP39-201ENST00000323701 PCP11498 1178 aaKnown RBP21.54■■□□□ 1.04
USP39-201ENST00000323701 NCLP19338 710 aaKnown RBP21.54■■□□□ 1.04
USP39-201ENST00000323701 IFFO2Q5TF58 517 aa21.54■■□□□ 1.04
USP39-201ENST00000323701 STRIP1Q5VSL9 837 aa21.54■■□□□ 1.04
USP39-201ENST00000323701 SLF2Q8IX21 1173 aa21.54■■□□□ 1.04
USP39-201ENST00000323701 DDX4Q9NQI0 724 aaKnown RBP21.54■■□□□ 1.04
USP39-201ENST00000323701 ERICH2A1L162 156 aa21.53■■□□□ 1.04
USP39-201ENST00000323701 PPIP5K2O43314 1243 aa21.53■■□□□ 1.04
USP39-201ENST00000323701 SKOR2Q2VWA4 1001 aaPredicted RBP21.53■■□□□ 1.04
USP39-201ENST00000323701 APOBEC3HQ6NTF7 200 aaKnown RBP21.53■■□□□ 1.04
USP39-201ENST00000323701 ZNF654Q8IZM8 581 aa21.53■■□□□ 1.04
USP39-201ENST00000323701 MTA3Q9BTC8 594 aa21.53■■□□□ 1.04
USP39-201ENST00000323701 ROBO3Q96MS0 1386 aa21.53■■□□□ 1.04
USP39-201ENST00000323701 WDHD1O75717 1129 aaPredicted RBP21.53■■□□□ 1.04
USP39-201ENST00000323701 PTMSP20962 102 aa21.53■■□□□ 1.04
USP39-201ENST00000323701 PDE4BQ07343 736 aa21.53■■□□□ 1.04
USP39-201ENST00000323701 CC2D2BQ6DHV5 1058 aa21.53■■□□□ 1.04
USP39-201ENST00000323701 POLR3DP05423 398 aaPredicted RBP21.52■■□□□ 1.04
USP39-201ENST00000323701 PLCG2P16885 1265 aa21.52■■□□□ 1.04
USP39-201ENST00000323701 PICALMQ13492 652 aa21.52■■□□□ 1.04
USP39-201ENST00000323701 MTFR1LQ9H019 292 aa21.52■■□□□ 1.04
USP39-201ENST00000323701 ZNF277Q9NRM2 450 aaPredicted RBP21.52■■□□□ 1.04
USP39-201ENST00000323701 ATP6V1DQ9Y5K8 247 aa21.52■■□□□ 1.04
USP39-201ENST00000323701 TPRNQ4KMQ1 711 aa21.51■■□□□ 1.03
USP39-201ENST00000323701 NUP133Q8WUM0 1156 aa21.51■■□□□ 1.03
USP39-201ENST00000323701 IL17RBQ9NRM6 502 aa21.51■■□□□ 1.03
USP39-201ENST00000323701 RBM27Q9P2N5 1060 aaKnown RBP21.51■■□□□ 1.03
USP39-201ENST00000323701 TFIP11Q9UBB9 837 aaKnown RBP21.51■■□□□ 1.03
USP39-201ENST00000323701 NID2Q14112 1375 aa21.51■■□□□ 1.03
USP39-201ENST00000323701 USP17L3A6NCW0 530 aa21.51■■□□□ 1.03
USP39-201ENST00000323701 USP17L4A6NCW7 530 aa21.51■■□□□ 1.03
USP39-201ENST00000323701 SLC3A2P08195 630 aaKnown RBP21.51■■□□□ 1.03
USP39-201ENST00000323701 PDIA4P13667 645 aaKnown RBP21.51■■□□□ 1.03
USP39-201ENST00000323701 CRKP46108 304 aa21.51■■□□□ 1.03
USP39-201ENST00000323701 CCDC93Q567U6 631 aa21.51■■□□□ 1.03
USP39-201ENST00000323701 RCSD1Q6JBY9 416 aa21.51■■□□□ 1.03
USP39-201ENST00000323701 CDC42EP5Q6NZY7 148 aa21.51■■□□□ 1.03
USP39-201ENST00000323701 USP17L1Q7RTZ2 530 aa21.51■■□□□ 1.03
USP39-201ENST00000323701 IQCA1Q86XH1 822 aa21.51■■□□□ 1.03
USP39-201ENST00000323701 CCDC82Q8N4S0 544 aa21.51■■□□□ 1.03
USP39-201ENST00000323701 TMEM87AQ8NBN3 555 aa21.51■■□□□ 1.03
USP39-201ENST00000323701 TAOK2Q9UL54 1235 aa21.51■■□□□ 1.03
USP39-201ENST00000323701 FOCADQ5VW36 1801 aa21.51■■□□□ 1.03
USP39-201ENST00000323701 PSDA5PKW4 1024 aaPredicted RBP21.5■■□□□ 1.03
USP39-201ENST00000323701 TFAP4Q01664 338 aa21.5■■□□□ 1.03
USP39-201ENST00000323701 IFIT1BQ5T764 474 aaKnown RBP21.5■■□□□ 1.03
USP39-201ENST00000323701 HHIPL2Q6UWX4 724 aa21.5■■□□□ 1.03
USP39-201ENST00000323701 CERS3Q8IU89 383 aa21.5■■□□□ 1.03
USP39-201ENST00000323701 TMTC2Q8N394 836 aa21.5■■□□□ 1.03
USP39-201ENST00000323701 USP40Q9NVE5 1235 aa21.5■■□□□ 1.03
USP39-201ENST00000323701 MYH1P12882 1939 aa21.5■■□□□ 1.03
USP39-201ENST00000323701 TSPY2A6NKD2 308 aa21.5■■□□□ 1.03
USP39-201ENST00000323701 GUCY1A2P33402 732 aa21.5■■□□□ 1.03
USP39-201ENST00000323701 CAVIN1Q6NZI2 390 aaKnown RBP21.5■■□□□ 1.03
USP39-201ENST00000323701 FANCBQ8NB91 859 aa21.5■■□□□ 1.03
USP39-201ENST00000323701 UPF1Q92900 1129 aaKnown RBP eCLIP21.5■■□□□ 1.03
USP39-201ENST00000323701 TEKT1Q969V4 418 aa21.5■■□□□ 1.03
USP39-201ENST00000323701 PPP1R1BQ9UD71 204 aaPredicted RBP21.5■■□□□ 1.03
USP39-201ENST00000323701 RASA1P20936 1047 aa21.49■■□□□ 1.03
USP39-201ENST00000323701 NFIAQ12857 509 aa21.49■■□□□ 1.03
USP39-201ENST00000323701 RTN1Q16799 776 aa21.49■■□□□ 1.03
USP39-201ENST00000323701 SYNE3Q6ZMZ3 975 aa21.49■■□□□ 1.03
USP39-201ENST00000323701 CHMP4CQ96CF2 233 aa21.49■■□□□ 1.03
USP39-201ENST00000323701 ECM29Q5VYK3 1845 aa21.48■■□□□ 1.03
Retrieved 100 of 20,778 RNA–protein pairs in 17.6 ms