RNA–Protein interactions for RNA: ENST00000309660.9

PTPN2-201, Transcript of protein tyrosine phosphatase, non-receptor type 2, humanhuman

TSL 1 (best) BASIC

Gene PTPN2, Length 3,467 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN2-201ENST00000309660 GRIN1Q05586 938 aa13.31□□□□□ -0.28
PTPN2-201ENST00000309660 IFIT1BQ5T764 474 aaKnown RBP13.31□□□□□ -0.28
PTPN2-201ENST00000309660 PRIMPOLQ96LW4 560 aa13.31□□□□□ -0.28
PTPN2-201ENST00000309660 XPO4Q9C0E2 1151 aaKnown RBP13.31□□□□□ -0.28
PTPN2-201ENST00000309660 CCDC196A0A1B0GTZ2 297 aa13.3□□□□□ -0.28
PTPN2-201ENST00000309660 RPS8P62241 208 aaKnown RBP13.3□□□□□ -0.28
PTPN2-201ENST00000309660 LONRF3Q496Y0 759 aa13.3□□□□□ -0.28
PTPN2-201ENST00000309660 FAM47AQ5JRC9 791 aa13.3□□□□□ -0.28
PTPN2-201ENST00000309660 SLC51AQ86UW1 340 aa13.3□□□□□ -0.28
PTPN2-201ENST00000309660 LRRC8AQ8IWT6 810 aa13.3□□□□□ -0.28
PTPN2-201ENST00000309660 KCNH3Q9ULD8 1083 aa13.3□□□□□ -0.28
PTPN2-201ENST00000309660 PNPLA7Q6ZV29 1317 aa13.3□□□□□ -0.28
PTPN2-201ENST00000309660 FOXN1O15353 648 aa13.3□□□□□ -0.28
PTPN2-201ENST00000309660 PRDX5P30044 214 aa13.3□□□□□ -0.28
PTPN2-201ENST00000309660 NMT2O60551 498 aa13.3□□□□□ -0.28
PTPN2-201ENST00000309660 MMP1P03956 469 aa13.3□□□□□ -0.28
PTPN2-201ENST00000309660 ATP1A3P13637 1013 aa13.3□□□□□ -0.28
PTPN2-201ENST00000309660 UBE4AQ14139 1066 aa13.3□□□□□ -0.28
PTPN2-201ENST00000309660 PTPAQ15257 358 aa13.3□□□□□ -0.28
PTPN2-201ENST00000309660 IQCA1Q86XH1 822 aa13.3□□□□□ -0.28
PTPN2-201ENST00000309660 CRACR2BQ8N4Y2 399 aaPredicted RBP13.3□□□□□ -0.28
PTPN2-201ENST00000309660 MRFAP1L1Q96HT8 127 aa13.3□□□□□ -0.28
PTPN2-201ENST00000309660 BSDC1Q9NW68 430 aaPredicted RBP13.3□□□□□ -0.28
PTPN2-201ENST00000309660 PCDHB6Q9Y5E3 794 aa13.3□□□□□ -0.28
PTPN2-201ENST00000309660 V9GY48 417 aaPredicted RBP13.3□□□□□ -0.28
PTPN2-201ENST00000309660 FAM205CA6NFA0 338 aa13.29□□□□□ -0.28
PTPN2-201ENST00000309660 DEXIO95424 95 aa13.29□□□□□ -0.28
PTPN2-201ENST00000309660 NLRP12P59046 1061 aa13.29□□□□□ -0.28
PTPN2-201ENST00000309660 MYH14Q7Z406 1995 aaKnown RBP13.29□□□□□ -0.28
PTPN2-201ENST00000309660 BAZ2BQ9UIF8 2168 aaKnown RBP13.29□□□□□ -0.28
PTPN2-201ENST00000309660 USP27XA6NNY8 438 aa13.29□□□□□ -0.28
PTPN2-201ENST00000309660 SERPINC1P01008 464 aa13.29□□□□□ -0.28
PTPN2-201ENST00000309660 SARM1Q6SZW1 724 aa13.29□□□□□ -0.28
PTPN2-201ENST00000309660 CLEC4GQ6UXB4 293 aa13.29□□□□□ -0.28
PTPN2-201ENST00000309660 KRI1Q8N9T8 703 aaKnown RBP13.29□□□□□ -0.28
PTPN2-201ENST00000309660 PLEKHA8P1O95397 391 aa13.29□□□□□ -0.28
PTPN2-201ENST00000309660 U2AF2P26368 475 aaKnown RBP eCLIP13.29□□□□□ -0.28
PTPN2-201ENST00000309660 COL16A1Q07092 1604 aaPredicted RBP13.29□□□□□ -0.28
PTPN2-201ENST00000309660 ZNF827Q17R98 1081 aa13.29□□□□□ -0.28
PTPN2-201ENST00000309660 ANKRD36CQ5JPF3 1778 aa13.29□□□□□ -0.28
PTPN2-201ENST00000309660 CATIPQ7Z7H3 387 aa13.29□□□□□ -0.28
PTPN2-201ENST00000309660 GRAMD1CQ8IYS0 662 aa13.29□□□□□ -0.28
PTPN2-201ENST00000309660 TMTC2Q8N394 836 aa13.29□□□□□ -0.28
PTPN2-201ENST00000309660 ENAHQ8N8S7 591 aaPredicted RBP13.29□□□□□ -0.28
PTPN2-201ENST00000309660 MAP3K14Q99558 947 aa13.29□□□□□ -0.28
PTPN2-201ENST00000309660 ANKIB1Q9P2G1 1089 aa13.29□□□□□ -0.28
PTPN2-201ENST00000309660 POLR2DO15514 142 aaKnown RBP13.28□□□□□ -0.28
PTPN2-201ENST00000309660 HIBADHP31937 336 aaKnown RBP13.28□□□□□ -0.28
PTPN2-201ENST00000309660 PPP6R2O75170 966 aa13.28□□□□□ -0.28
PTPN2-201ENST00000309660 CYP2D6P10635 497 aa13.28□□□□□ -0.28
PTPN2-201ENST00000309660 MECOMQ03112 1051 aa13.28□□□□□ -0.28
PTPN2-201ENST00000309660 OLFM4Q6UX06 510 aa13.28□□□□□ -0.28
PTPN2-201ENST00000309660 TXNRD3Q86VQ6 643 aa13.28□□□□□ -0.28
PTPN2-201ENST00000309660 ZSCAN10Q96SZ4 725 aaPredicted RBP13.28□□□□□ -0.28
PTPN2-201ENST00000309660 RIOK1Q9BRS2 568 aaKnown RBP13.28□□□□□ -0.28
PTPN2-201ENST00000309660 CCNL1Q9UK58 526 aaPredicted RBP13.28□□□□□ -0.28
PTPN2-201ENST00000309660 PCDHA5Q9Y5H7 936 aa13.28□□□□□ -0.28
PTPN2-201ENST00000309660 TOB1P50616 345 aaPredicted RBP13.27□□□□□ -0.28
PTPN2-201ENST00000309660 CFAP100Q494V2 611 aa13.27□□□□□ -0.28
PTPN2-201ENST00000309660 GPR101Q96P66 508 aaPredicted RBP13.27□□□□□ -0.28
PTPN2-201ENST00000309660 PDCL3Q9H2J4 239 aa13.27□□□□□ -0.28
PTPN2-201ENST00000309660 CUTAO60888 179 aa13.27□□□□□ -0.28
PTPN2-201ENST00000309660 SF3B3Q15393 1217 aaKnown RBP13.27□□□□□ -0.28
PTPN2-201ENST00000309660 DZIP1Q86YF9 867 aaKnown RBP13.27□□□□□ -0.28
PTPN2-201ENST00000309660 TAF1P21675 1872 aa13.27□□□□□ -0.29
PTPN2-201ENST00000309660 COL4A1P02462 1669 aa13.27□□□□□ -0.29
PTPN2-201ENST00000309660 TPTE2Q6XPS3 522 aa13.27□□□□□ -0.29
PTPN2-201ENST00000309660 USP49Q70CQ1 688 aa13.27□□□□□ -0.29
PTPN2-201ENST00000309660 ZNF384Q8TF68 577 aa13.27□□□□□ -0.29
PTPN2-201ENST00000309660 BCL2L12Q9HB09 334 aa13.27□□□□□ -0.29
PTPN2-201ENST00000309660 RTCBQ9Y3I0 505 aaKnown RBP13.27□□□□□ -0.29
PTPN2-201ENST00000309660 SMTNL1A8MU46 457 aa13.26□□□□□ -0.29
PTPN2-201ENST00000309660 XBP1P17861 261 aa13.26□□□□□ -0.29
PTPN2-201ENST00000309660 RESP18Q5W5W9 173 aa13.26□□□□□ -0.29
PTPN2-201ENST00000309660 BARGINQ6ZT62 677 aa13.26□□□□□ -0.29
PTPN2-201ENST00000309660 METTL16Q86W50 562 aaKnown RBP13.26□□□□□ -0.29
PTPN2-201ENST00000309660 MCM9Q9NXL9 1143 aa13.26□□□□□ -0.29
PTPN2-201ENST00000309660 TSPY2A6NKD2 308 aa13.26□□□□□ -0.29
PTPN2-201ENST00000309660 CDC25BP30305 580 aa13.26□□□□□ -0.29
PTPN2-201ENST00000309660 RBM6P78332 1123 aaKnown RBP13.26□□□□□ -0.29
PTPN2-201ENST00000309660 RILPL1Q5EBL4 403 aa13.26□□□□□ -0.29
PTPN2-201ENST00000309660 CTR9Q6PD62 1173 aa13.26□□□□□ -0.29
PTPN2-201ENST00000309660 KRBA2Q6ZNG9 492 aa13.26□□□□□ -0.29
PTPN2-201ENST00000309660 AMIGO3Q86WK7 504 aa13.26□□□□□ -0.29
PTPN2-201ENST00000309660 SERTAD1Q9UHV2 236 aa13.26□□□□□ -0.29
PTPN2-201ENST00000309660 ZNF804BA4D1E1 1349 aa13.26□□□□□ -0.29
PTPN2-201ENST00000309660 COL1A1P02452 1464 aaPredicted RBP13.26□□□□□ -0.29
PTPN2-201ENST00000309660 AFMP43652 599 aa13.26□□□□□ -0.29
PTPN2-201ENST00000309660 FANCCQ00597 558 aa13.26□□□□□ -0.29
PTPN2-201ENST00000309660 NBPF11Q86T75 865 aa13.26□□□□□ -0.29
PTPN2-201ENST00000309660 STK36Q9NRP7 1315 aa13.25□□□□□ -0.29
PTPN2-201ENST00000309660 SFPQP23246 707 aaKnown RBP eCLIP13.25□□□□□ -0.29
PTPN2-201ENST00000309660 TRMT44Q8IYL2 757 aaKnown RBP13.25□□□□□ -0.29
PTPN2-201ENST00000309660 DHX58Q96C10 678 aa13.25□□□□□ -0.29
PTPN2-201ENST00000309660 NSUN4Q96CB9 384 aaKnown RBP13.25□□□□□ -0.29
PTPN2-201ENST00000309660 CRNKL1Q9BZJ0 848 aaKnown RBP13.25□□□□□ -0.29
PTPN2-201ENST00000309660 UBAP1LF5GYI3 381 aa13.25□□□□□ -0.29
PTPN2-201ENST00000309660 TOM1O60784 492 aa13.25□□□□□ -0.29
PTPN2-201ENST00000309660 CDK11BP21127 795 aaKnown RBP13.25□□□□□ -0.29
PTPN2-201ENST00000309660 UBASH3AP57075 661 aa13.25□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 51 ms