RNA–Protein interactions for RNA: ENST00000304636.7

COL3A1-201, Transcript of collagen type III alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL3A1, Length 5,543 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1-201ENST00000304636 CLNS1AP54105 237 aaKnown RBP14.36□□□□□ -0.11
COL3A1-201ENST00000304636 MTMR3Q13615 1198 aa14.36□□□□□ -0.11
COL3A1-201ENST00000304636 CUL4AQ13619 759 aa14.36□□□□□ -0.11
COL3A1-201ENST00000304636 AEBP2Q6ZN18 517 aaPredicted RBP14.36□□□□□ -0.11
COL3A1-201ENST00000304636 TRMT44Q8IYL2 757 aaKnown RBP14.36□□□□□ -0.11
COL3A1-201ENST00000304636 BUB1BO60566 1050 aaPredicted RBP14.36□□□□□ -0.11
COL3A1-201ENST00000304636 CMA1P23946 247 aa14.36□□□□□ -0.11
COL3A1-201ENST00000304636 TRMT1LQ7Z2T5 733 aaKnown RBP14.36□□□□□ -0.11
COL3A1-201ENST00000304636 NELFBQ8WX92 580 aa14.36□□□□□ -0.11
COL3A1-201ENST00000304636 EEF2P13639 858 aaKnown RBP14.36□□□□□ -0.11
COL3A1-201ENST00000304636 ASIC2Q16515 512 aa14.36□□□□□ -0.11
COL3A1-201ENST00000304636 LONRF3Q496Y0 759 aa14.36□□□□□ -0.11
COL3A1-201ENST00000304636 CEP128Q6ZU80 1094 aa14.36□□□□□ -0.11
COL3A1-201ENST00000304636 MAGI2Q86UL8 1455 aa14.35□□□□□ -0.11
COL3A1-201ENST00000304636 PPFIA4O75335 1185 aa14.35□□□□□ -0.11
COL3A1-201ENST00000304636 SPATS2Q86XZ4 545 aaKnown RBP14.35□□□□□ -0.11
COL3A1-201ENST00000304636 XAGE2Q96GT9 111 aa14.35□□□□□ -0.11
COL3A1-201ENST00000304636 STAP2Q9UGK3 403 aa14.35□□□□□ -0.11
COL3A1-201ENST00000304636 V9GY48 417 aaPredicted RBP14.35□□□□□ -0.11
COL3A1-201ENST00000304636 ADAMTS12P58397 1594 aa14.35□□□□□ -0.11
COL3A1-201ENST00000304636 ATP2A2P16615 1042 aaKnown RBP14.35□□□□□ -0.11
COL3A1-201ENST00000304636 CEBPAP49715 358 aaPredicted RBP14.35□□□□□ -0.11
COL3A1-201ENST00000304636 LETM2Q2VYF4 491 aa14.35□□□□□ -0.11
COL3A1-201ENST00000304636 LMNTD2Q8IXW0 634 aa14.35□□□□□ -0.11
COL3A1-201ENST00000304636 SMARCC2Q8TAQ2 1214 aa14.35□□□□□ -0.11
COL3A1-201ENST00000304636 FAM71BQ8TC56 605 aa14.35□□□□□ -0.11
COL3A1-201ENST00000304636 ABCC10Q5T3U5 1492 aa14.35□□□□□ -0.11
COL3A1-201ENST00000304636 VGLL3A8MV65 326 aa14.35□□□□□ -0.11
COL3A1-201ENST00000304636 GOLGA8KD6RF30 607 aa14.35□□□□□ -0.11
COL3A1-201ENST00000304636 DCAF17Q5H9S7 520 aaPredicted RBP14.35□□□□□ -0.11
COL3A1-201ENST00000304636 RABGGTAQ92696 567 aa14.35□□□□□ -0.11
COL3A1-201ENST00000304636 CHAMP1Q96JM3 812 aa14.35□□□□□ -0.11
COL3A1-201ENST00000304636 RABEP2Q9H5N1 569 aa14.35□□□□□ -0.11
COL3A1-201ENST00000304636 TRIML1Q8N9V2 468 aa14.35□□□□□ -0.11
COL3A1-201ENST00000304636 PHKBQ93100 1093 aa14.35□□□□□ -0.11
COL3A1-201ENST00000304636 PPP1R13BQ96KQ4 1090 aa14.35□□□□□ -0.11
COL3A1-201ENST00000304636 SYNCQ9H7C4 482 aa14.35□□□□□ -0.11
COL3A1-201ENST00000304636 EPB41P11171 864 aaKnown RBP14.34□□□□□ -0.11
COL3A1-201ENST00000304636 PLCB3Q01970 1234 aa14.34□□□□□ -0.11
COL3A1-201ENST00000304636 CCDC84Q86UT8 332 aaPredicted RBP14.34□□□□□ -0.11
COL3A1-201ENST00000304636 HELBQ8NG08 1087 aaPredicted RBP14.34□□□□□ -0.11
COL3A1-201ENST00000304636 SERTAD1Q9UHV2 236 aa14.34□□□□□ -0.11
COL3A1-201ENST00000304636 TAOK1Q7L7X3 1001 aa14.34□□□□□ -0.11
COL3A1-201ENST00000304636 CCDC160A6NGH7 325 aa14.34□□□□□ -0.11
COL3A1-201ENST00000304636 SPDYE3A6NKU9 549 aa14.34□□□□□ -0.11
COL3A1-201ENST00000304636 MAP2K2P36507 400 aa14.34□□□□□ -0.11
COL3A1-201ENST00000304636 STMN2Q93045 179 aa14.34□□□□□ -0.11
COL3A1-201ENST00000304636 USP44Q9H0E7 712 aa14.34□□□□□ -0.11
COL3A1-201ENST00000304636 STX10O60499 249 aa14.34□□□□□ -0.11
COL3A1-201ENST00000304636 LSG1Q9H089 658 aaKnown RBP14.34□□□□□ -0.11
COL3A1-201ENST00000304636 GBP1P32455 592 aa14.34□□□□□ -0.11
COL3A1-201ENST00000304636 CLUL1Q15846 466 aa14.34□□□□□ -0.11
COL3A1-201ENST00000304636 NBPF6Q5VWK0 638 aa14.34□□□□□ -0.11
COL3A1-201ENST00000304636 DAAM2Q86T65 1068 aa14.34□□□□□ -0.11
COL3A1-201ENST00000304636 NBPF5PQ86XG9 351 aaPredicted RBP14.34□□□□□ -0.11
COL3A1-201ENST00000304636 NBPF4Q96M43 638 aa14.34□□□□□ -0.11
COL3A1-201ENST00000304636 NUCKS1Q9H1E3 243 aaKnown RBP14.34□□□□□ -0.11
COL3A1-201ENST00000304636 PLCG2P16885 1265 aa14.33□□□□□ -0.11
COL3A1-201ENST00000304636 GJC1P36383 396 aa14.33□□□□□ -0.11
COL3A1-201ENST00000304636 RNASE9P60153 205 aaKnown RBP14.33□□□□□ -0.11
COL3A1-201ENST00000304636 ZNF790Q6PG37 636 aa14.33□□□□□ -0.11
COL3A1-201ENST00000304636 TRIM58Q8NG06 486 aa14.33□□□□□ -0.11
COL3A1-201ENST00000304636 OR8K1Q8NGG5 319 aa14.33□□□□□ -0.11
COL3A1-201ENST00000304636 NRBP1Q9UHY1 535 aa14.33□□□□□ -0.11
COL3A1-201ENST00000304636 PCDHA7Q9UN72 937 aa14.33□□□□□ -0.11
COL3A1-201ENST00000304636 ARHGEF10O15013 1369 aa14.33□□□□□ -0.11
COL3A1-201ENST00000304636 E7EVH7 732 aa14.33□□□□□ -0.12
COL3A1-201ENST00000304636 PARP1P09874 1014 aaKnown RBP14.33□□□□□ -0.12
COL3A1-201ENST00000304636 PLEKHF1Q96S99 279 aa14.33□□□□□ -0.12
COL3A1-201ENST00000304636 DESI2Q9BSY9 194 aa14.33□□□□□ -0.12
COL3A1-201ENST00000304636 CPSF2Q9P2I0 782 aaKnown RBP14.33□□□□□ -0.12
COL3A1-201ENST00000304636 A0A1W2PQ27 194 aa14.33□□□□□ -0.12
COL3A1-201ENST00000304636 A0A1W2PQ64 194 aa14.33□□□□□ -0.12
COL3A1-201ENST00000304636 A0A1W2PQD8 194 aa14.33□□□□□ -0.12
COL3A1-201ENST00000304636 GCKRQ14397 625 aa14.33□□□□□ -0.12
COL3A1-201ENST00000304636 NBPF14Q5TI25 921 aa14.33□□□□□ -0.12
COL3A1-201ENST00000304636 PLCB1Q9NQ66 1216 aa14.33□□□□□ -0.12
COL3A1-201ENST00000304636 SDAD1Q9NVU7 687 aaKnown RBP eCLIP14.33□□□□□ -0.12
COL3A1-201ENST00000304636 HDAC9Q9UKV0 1011 aa14.33□□□□□ -0.12
COL3A1-201ENST00000304636 GNGT1P63211 74 aa14.33□□□□□ -0.12
COL3A1-201ENST00000304636 IFIH1Q9BYX4 1025 aaKnown RBP14.33□□□□□ -0.12
COL3A1-201ENST00000304636 SERPINA10Q9UK55 444 aa14.33□□□□□ -0.12
COL3A1-201ENST00000304636 ADGBQ8N7X0 1667 aa14.33□□□□□ -0.12
COL3A1-201ENST00000304636 A0A0D9SFI3 127 aa14.32□□□□□ -0.12
COL3A1-201ENST00000304636 TNFAIP3P21580 790 aa14.32□□□□□ -0.12
COL3A1-201ENST00000304636 PCK1P35558 622 aa14.32□□□□□ -0.12
COL3A1-201ENST00000304636 NLRP3Q96P20 1036 aa14.32□□□□□ -0.12
COL3A1-201ENST00000304636 ARMT1Q9H993 441 aa14.32□□□□□ -0.12
COL3A1-201ENST00000304636 SBDSQ9Y3A5 250 aaKnown RBP eCLIP14.32□□□□□ -0.12
COL3A1-201ENST00000304636 DZIP3Q86Y13 1208 aaKnown RBP14.32□□□□□ -0.12
COL3A1-201ENST00000304636 CACNA2D3Q8IZS8 1091 aa14.32□□□□□ -0.12
COL3A1-201ENST00000304636 UBL4BQ8N7F7 174 aa14.32□□□□□ -0.12
COL3A1-201ENST00000304636 SYNMO15061 1565 aa14.32□□□□□ -0.12
COL3A1-201ENST00000304636 CEP104O60308 925 aa14.32□□□□□ -0.12
COL3A1-201ENST00000304636 CCDC63Q8NA47 563 aa14.32□□□□□ -0.12
COL3A1-201ENST00000304636 IMPG2Q9BZV3 1241 aa14.32□□□□□ -0.12
COL3A1-201ENST00000304636 NIP7Q9Y221 180 aaKnown RBP eCLIP14.32□□□□□ -0.12
COL3A1-201ENST00000304636 FRMD4BQ9Y2L6 1034 aa14.32□□□□□ -0.12
COL3A1-201ENST00000304636 NCKAP5LQ9HCH0 1330 aa14.32□□□□□ -0.12
COL3A1-201ENST00000304636 CETN3O15182 167 aa14.32□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms