RNA–Protein interactions for RNA: ENST00000296098.4

TRIM54-201, Transcript of tripartite motif containing 54, humanhuman

TSL 1 (best) BASIC

Gene TRIM54, Length 2,027 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM54-201ENST00000296098 NUP133Q8WUM0 1156 aa27.73■■■□□ 2.03
TRIM54-201ENST00000296098 DLEC1Q9Y238 1755 aa27.73■■■□□ 2.03
TRIM54-201ENST00000296098 CCDC88AQ3V6T2 1871 aa27.73■■■□□ 2.03
TRIM54-201ENST00000296098 PCP11498 1178 aaKnown RBP27.72■■■□□ 2.03
TRIM54-201ENST00000296098 PFKFB1P16118 471 aa27.72■■■□□ 2.03
TRIM54-201ENST00000296098 TM4SF1P30408 202 aa27.72■■■□□ 2.03
TRIM54-201ENST00000296098 PTPAQ15257 358 aa27.72■■■□□ 2.03
TRIM54-201ENST00000296098 FANCBQ8NB91 859 aa27.72■■■□□ 2.03
TRIM54-201ENST00000296098 MAP3K14Q99558 947 aa27.72■■■□□ 2.03
TRIM54-201ENST00000296098 WDHD1O75717 1129 aaPredicted RBP27.72■■■□□ 2.03
TRIM54-201ENST00000296098 DEXIO95424 95 aa27.72■■■□□ 2.03
TRIM54-201ENST00000296098 MMP1P03956 469 aa27.72■■■□□ 2.03
TRIM54-201ENST00000296098 MARCKSP29966 332 aaPredicted RBP27.72■■■□□ 2.03
TRIM54-201ENST00000296098 GUCY1A2P33402 732 aa27.72■■■□□ 2.03
TRIM54-201ENST00000296098 RFC4P35249 363 aa27.72■■■□□ 2.03
TRIM54-201ENST00000296098 SAFBQ15424 915 aaKnown RBP eCLIP27.72■■■□□ 2.03
TRIM54-201ENST00000296098 CRACR2BQ8N4Y2 399 aaPredicted RBP27.72■■■□□ 2.03
TRIM54-201ENST00000296098 MYH2Q9UKX2 1941 aa27.72■■■□□ 2.03
TRIM54-201ENST00000296098 CYP2D7A0A087X1C5 515 aa27.71■■■□□ 2.03
TRIM54-201ENST00000296098 SMIM22K7EJ46 135 aa27.71■■■□□ 2.03
TRIM54-201ENST00000296098 TPM2P07951 284 aa27.71■■■□□ 2.03
TRIM54-201ENST00000296098 KCNF1Q9H3M0 494 aa27.71■■■□□ 2.03
TRIM54-201ENST00000296098 KIAA1551Q9HCM1 1747 aa27.7■■■□□ 2.03
TRIM54-201ENST00000296098 ZNF202O95125 648 aa27.7■■■□□ 2.03
TRIM54-201ENST00000296098 TERF1P54274 439 aa27.7■■■□□ 2.03
TRIM54-201ENST00000296098 CHAF1AQ13111 956 aaPredicted RBP27.7■■■□□ 2.03
TRIM54-201ENST00000296098 SARM1Q6SZW1 724 aa27.7■■■□□ 2.03
TRIM54-201ENST00000296098 NOSTRINQ8IVI9 506 aa27.7■■■□□ 2.03
TRIM54-201ENST00000296098 ERCC4Q92889 916 aaPredicted RBP27.7■■■□□ 2.03
TRIM54-201ENST00000296098 ZSCAN10Q96SZ4 725 aaPredicted RBP27.7■■■□□ 2.03
TRIM54-201ENST00000296098 PPP2R5BQ15173 497 aa27.7■■■□□ 2.02
TRIM54-201ENST00000296098 CTR9Q6PD62 1173 aa27.7■■■□□ 2.02
TRIM54-201ENST00000296098 CRNKL1Q9BZJ0 848 aaKnown RBP27.7■■■□□ 2.02
TRIM54-201ENST00000296098 NAT10Q9H0A0 1025 aaKnown RBP27.7■■■□□ 2.02
TRIM54-201ENST00000296098 KIAA1468Q9P260 1216 aa27.7■■■□□ 2.02
TRIM54-201ENST00000296098 R3HCC1Q9Y3T6 440 aaKnown RBP27.7■■■□□ 2.02
TRIM54-201ENST00000296098 BECN2A8MW95 431 aa27.69■■■□□ 2.02
TRIM54-201ENST00000296098 TRAPPC3LQ5T215 181 aa27.69■■■□□ 2.02
TRIM54-201ENST00000296098 TMED8Q6PL24 325 aaPredicted RBP27.69■■■□□ 2.02
TRIM54-201ENST00000296098 ENAHQ8N8S7 591 aaPredicted RBP27.69■■■□□ 2.02
TRIM54-201ENST00000296098 MYH6P13533 1939 aa27.69■■■□□ 2.02
TRIM54-201ENST00000296098 A0A087WWV3 80 aa27.68■■■□□ 2.02
TRIM54-201ENST00000296098 FGRP09769 529 aa27.68■■■□□ 2.02
TRIM54-201ENST00000296098 ZRSR1Q15695 479 aaKnown RBP27.68■■■□□ 2.02
TRIM54-201ENST00000296098 DHX40Q8IX18 779 aaKnown RBP27.68■■■□□ 2.02
TRIM54-201ENST00000296098 DRC7Q8IY82 874 aa27.68■■■□□ 2.02
TRIM54-201ENST00000296098 DIS3L2Q8IYB7 885 aaKnown RBP27.68■■■□□ 2.02
TRIM54-201ENST00000296098 GJD4Q96KN9 370 aaPredicted RBP27.68■■■□□ 2.02
TRIM54-201ENST00000296098 IRS2Q9Y4H2 1338 aa27.68■■■□□ 2.02
TRIM54-201ENST00000296098 ZBTB22O15209 634 aa27.68■■■□□ 2.02
TRIM54-201ENST00000296098 PRDX5P30044 214 aa27.68■■■□□ 2.02
TRIM54-201ENST00000296098 CDC25BP30305 580 aa27.68■■■□□ 2.02
TRIM54-201ENST00000296098 NOLC1Q14978 699 aaKnown RBP eCLIP27.68■■■□□ 2.02
TRIM54-201ENST00000296098 AATFQ9NY61 560 aaKnown RBP eCLIP27.68■■■□□ 2.02
TRIM54-201ENST00000296098 SLC3A2P08195 630 aaKnown RBP27.67■■■□□ 2.02
TRIM54-201ENST00000296098 IQCA1Q86XH1 822 aa27.67■■■□□ 2.02
TRIM54-201ENST00000296098 CMTR1Q8N1G2 835 aaKnown RBP27.67■■■□□ 2.02
TRIM54-201ENST00000296098 CCDC82Q8N4S0 544 aa27.67■■■□□ 2.02
TRIM54-201ENST00000296098 FOXP1Q9H334 677 aaPredicted RBP27.67■■■□□ 2.02
TRIM54-201ENST00000296098 USP17L12C9JPN9 530 aa27.67■■■□□ 2.02
TRIM54-201ENST00000296098 USP17L21D6R901 530 aa27.67■■■□□ 2.02
TRIM54-201ENST00000296098 PTGS1P23219 599 aa27.67■■■□□ 2.02
TRIM54-201ENST00000296098 IFIT1BQ5T764 474 aaKnown RBP27.67■■■□□ 2.02
TRIM54-201ENST00000296098 TIGD1Q96MW7 591 aa27.67■■■□□ 2.02
TRIM54-201ENST00000296098 EIF4ENIF1Q9NRA8 985 aaKnown RBP27.67■■■□□ 2.02
TRIM54-201ENST00000296098 KCNJ14Q9UNX9 436 aa27.67■■■□□ 2.02
TRIM54-201ENST00000296098 HPSEQ9Y251 543 aa27.67■■■□□ 2.02
TRIM54-201ENST00000296098 BTBD18B2RXH4 712 aa27.66■■■□□ 2.02
TRIM54-201ENST00000296098 MEX3CQ5U5Q3 659 aaKnown RBP27.66■■■□□ 2.02
TRIM54-201ENST00000296098 SHC4Q6S5L8 630 aa27.66■■■□□ 2.02
TRIM54-201ENST00000296098 TXNRD3Q86VQ6 643 aa27.66■■■□□ 2.02
TRIM54-201ENST00000296098 RNF26Q9BY78 433 aaPredicted RBP27.66■■■□□ 2.02
TRIM54-201ENST00000296098 SPTLC3Q9NUV7 552 aa27.66■■■□□ 2.02
TRIM54-201ENST00000296098 CUTAO60888 179 aa27.65■■■□□ 2.02
TRIM54-201ENST00000296098 PRDM1O75626 825 aa27.65■■■□□ 2.02
TRIM54-201ENST00000296098 SYKP43405 635 aa27.65■■■□□ 2.02
TRIM54-201ENST00000296098 GRAPQ13588 217 aa27.65■■■□□ 2.02
TRIM54-201ENST00000296098 NFIXQ14938 502 aa27.65■■■□□ 2.02
TRIM54-201ENST00000296098 FAM196AQ6ZSG2 479 aa27.65■■■□□ 2.02
TRIM54-201ENST00000296098 CATIPQ7Z7H3 387 aa27.65■■■□□ 2.02
TRIM54-201ENST00000296098 CNBD1Q8NA66 436 aa27.65■■■□□ 2.02
TRIM54-201ENST00000296098 GRAPLQ8TC17 118 aaPredicted RBP27.65■■■□□ 2.02
TRIM54-201ENST00000296098 DCP1AQ9NPI6 582 aaPredicted RBP27.65■■■□□ 2.02
TRIM54-201ENST00000296098 ATP8A2Q9NTI2 1148 aa27.65■■■□□ 2.02
TRIM54-201ENST00000296098 DDX52Q9Y2R4 599 aaKnown RBP eCLIP27.65■■■□□ 2.02
TRIM54-201ENST00000296098 FAM237AA0A1B0GTK4 181 aa27.65■■■□□ 2.02
TRIM54-201ENST00000296098 RESP18Q5W5W9 173 aa27.65■■■□□ 2.02
TRIM54-201ENST00000296098 SPTY2D1Q68D10 685 aaPredicted RBP27.65■■■□□ 2.02
TRIM54-201ENST00000296098 AOPEPQ8N6M6 819 aa27.65■■■□□ 2.02
TRIM54-201ENST00000296098 CLIP2Q9UDT6 1046 aa27.65■■■□□ 2.02
TRIM54-201ENST00000296098 C17orf53Q8N3J3 647 aaPredicted RBP27.64■■■□□ 2.02
TRIM54-201ENST00000296098 FBXW7Q969H0 707 aa27.64■■■□□ 2.02
TRIM54-201ENST00000296098 ARPP21Q9UBL0 812 aaPredicted RBP27.64■■■□□ 2.02
TRIM54-201ENST00000296098 ORC4O43929 436 aa27.63■■■□□ 2.01
TRIM54-201ENST00000296098 CCDC186Q7Z3E2 898 aa27.63■■■□□ 2.01
TRIM54-201ENST00000296098 DZIP1Q86YF9 867 aaKnown RBP27.63■■■□□ 2.01
TRIM54-201ENST00000296098 KIAA1524Q8TCG1 905 aa27.63■■■□□ 2.01
TRIM54-201ENST00000296098 ANKIB1Q9P2G1 1089 aa27.63■■■□□ 2.01
TRIM54-201ENST00000296098 PYCARDQ9ULZ3 195 aa27.63■■■□□ 2.01
TRIM54-201ENST00000296098 AKAP17AQ02040 695 aaKnown RBP27.63■■■□□ 2.01
Retrieved 100 of 20,778 RNA–protein pairs in 72.8 ms