RNA–Protein interactions for RNA: ENST00000287008.7

PCDH1-201, Transcript of protocadherin 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene PCDH1, Length 4,793 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH1-201ENST00000287008 SCNN1DP51172 638 aa20.81■□□□□ 0.92
PCDH1-201ENST00000287008 PDE8BO95263 885 aa20.81■□□□□ 0.92
PCDH1-201ENST00000287008 OTUD7BQ6GQQ9 843 aa20.81■□□□□ 0.92
PCDH1-201ENST00000287008 CNNM4Q6P4Q7 775 aa20.81■□□□□ 0.92
PCDH1-201ENST00000287008 ABCC4O15439 1325 aa20.81■□□□□ 0.92
PCDH1-201ENST00000287008 SEC24BO95487 1268 aa20.81■□□□□ 0.92
PCDH1-201ENST00000287008 KRT40Q6A162 431 aa20.81■□□□□ 0.92
PCDH1-201ENST00000287008 MAATS1Q7Z4T9 603 aa20.81■□□□□ 0.92
PCDH1-201ENST00000287008 PSMD1Q99460 953 aa20.81■□□□□ 0.92
PCDH1-201ENST00000287008 ZNF804BA4D1E1 1349 aa20.81■□□□□ 0.92
PCDH1-201ENST00000287008 STRN3Q13033 797 aa20.81■□□□□ 0.92
PCDH1-201ENST00000287008 RAPGEF1Q13905 1077 aa20.81■□□□□ 0.92
PCDH1-201ENST00000287008 KIFC2Q96AC6 838 aa20.81■□□□□ 0.92
PCDH1-201ENST00000287008 SERPINB2P05120 415 aa20.8■□□□□ 0.92
PCDH1-201ENST00000287008 GREM2Q9H772 168 aa20.8■□□□□ 0.92
PCDH1-201ENST00000287008 EXOC7Q9UPT5 735 aa20.8■□□□□ 0.92
PCDH1-201ENST00000287008 E7EWF7 191 aa20.8■□□□□ 0.92
PCDH1-201ENST00000287008 CETN3O15182 167 aa20.8■□□□□ 0.92
PCDH1-201ENST00000287008 DNAI1Q9UI46 699 aa20.8■□□□□ 0.92
PCDH1-201ENST00000287008 LRRC24Q50LG9 513 aa20.8■□□□□ 0.92
PCDH1-201ENST00000287008 RNF216Q9NWF9 866 aaPredicted RBP20.8■□□□□ 0.92
PCDH1-201ENST00000287008 TMC4Q7Z404 712 aa20.8■□□□□ 0.92
PCDH1-201ENST00000287008 COPRSQ9NQ92 184 aa20.8■□□□□ 0.92
PCDH1-201ENST00000287008 DNM3Q9UQ16 869 aa20.8■□□□□ 0.92
PCDH1-201ENST00000287008 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP20.79■□□□□ 0.92
PCDH1-201ENST00000287008 SLC8A3P57103 927 aa20.79■□□□□ 0.92
PCDH1-201ENST00000287008 ZNF654Q8IZM8 581 aa20.79■□□□□ 0.92
PCDH1-201ENST00000287008 TRIM6Q9C030 488 aaPredicted RBP20.79■□□□□ 0.92
PCDH1-201ENST00000287008 XDHP47989 1333 aa20.79■□□□□ 0.92
PCDH1-201ENST00000287008 CTAGE15A4D2H0 777 aa20.79■□□□□ 0.92
PCDH1-201ENST00000287008 DDX39AO00148 427 aaKnown RBP20.79■□□□□ 0.92
PCDH1-201ENST00000287008 CTAGE8P0CG41 777 aa20.79■□□□□ 0.92
PCDH1-201ENST00000287008 CTAGE6Q86UF2 777 aa20.79■□□□□ 0.92
PCDH1-201ENST00000287008 CTAGE4Q8IX94 777 aa20.79■□□□□ 0.92
PCDH1-201ENST00000287008 SLC5A4Q9NY91 659 aa20.79■□□□□ 0.92
PCDH1-201ENST00000287008 LEMD3Q9Y2U8 911 aa20.79■□□□□ 0.92
PCDH1-201ENST00000287008 CUTAO60888 179 aa20.79■□□□□ 0.92
PCDH1-201ENST00000287008 HERC4Q5GLZ8 1057 aaPredicted RBP20.79■□□□□ 0.92
PCDH1-201ENST00000287008 IFNKQ9P0W0 207 aa20.79■□□□□ 0.92
PCDH1-201ENST00000287008 DNM2P50570 870 aa20.78■□□□□ 0.92
PCDH1-201ENST00000287008 TBC1D8BQ0IIM8 1120 aa20.78■□□□□ 0.92
PCDH1-201ENST00000287008 TM6SF1Q9BZW5 370 aa20.78■□□□□ 0.92
PCDH1-201ENST00000287008 SPC25Q9HBM1 224 aa20.78■□□□□ 0.92
PCDH1-201ENST00000287008 ATP6V0A2Q9Y487 856 aa20.78■□□□□ 0.92
PCDH1-201ENST00000287008 MYO5CQ9NQX4 1742 aa20.78■□□□□ 0.92
PCDH1-201ENST00000287008 KDM5DQ9BY66 1539 aa20.78■□□□□ 0.92
PCDH1-201ENST00000287008 USP6P35125 1406 aa20.78■□□□□ 0.92
PCDH1-201ENST00000287008 STAMBPO95630 424 aa20.78■□□□□ 0.92
PCDH1-201ENST00000287008 IFNL3Q8IZI9 196 aa20.78■□□□□ 0.92
PCDH1-201ENST00000287008 DCPSQ96C86 337 aaKnown RBP20.78■□□□□ 0.92
PCDH1-201ENST00000287008 PAXBP1Q9Y5B6 917 aa20.78■□□□□ 0.92
PCDH1-201ENST00000287008 STX10O60499 249 aa20.78■□□□□ 0.92
PCDH1-201ENST00000287008 NLRX1Q86UT6 975 aa20.78■□□□□ 0.92
PCDH1-201ENST00000287008 UNC5CLQ8IV45 518 aa20.78■□□□□ 0.92
PCDH1-201ENST00000287008 CCDC117Q8IWD4 279 aaPredicted RBP20.78■□□□□ 0.92
PCDH1-201ENST00000287008 RASAL2Q9UJF2 1139 aa20.78■□□□□ 0.92
PCDH1-201ENST00000287008 TCP10L2B9ZVM9 353 aa20.78■□□□□ 0.92
PCDH1-201ENST00000287008 ATP2A1O14983 1001 aa20.78■□□□□ 0.92
PCDH1-201ENST00000287008 PAGR1Q9BTK6 254 aa20.78■□□□□ 0.92
PCDH1-201ENST00000287008 ZMYM4Q5VZL5 1548 aa20.78■□□□□ 0.92
PCDH1-201ENST00000287008 PABPC4Q13310 644 aaKnown RBP eCLIP20.77■□□□□ 0.92
PCDH1-201ENST00000287008 CGNQ9P2M7 1197 aaKnown RBP20.77■□□□□ 0.92
PCDH1-201ENST00000287008 BBOX1O75936 387 aa20.77■□□□□ 0.92
PCDH1-201ENST00000287008 HSPA4P34932 840 aa20.77■□□□□ 0.92
PCDH1-201ENST00000287008 CERKLQ49MI3 558 aaPredicted RBP20.77■□□□□ 0.92
PCDH1-201ENST00000287008 MYOM2P54296 1465 aa20.77■□□□□ 0.92
PCDH1-201ENST00000287008 hCG_1642624A0A1W2PR95 340 aa20.77■□□□□ 0.91
PCDH1-201ENST00000287008 POLR2DO15514 142 aaKnown RBP20.77■□□□□ 0.91
PCDH1-201ENST00000287008 TRPC3Q13507 836 aa20.77■□□□□ 0.91
PCDH1-201ENST00000287008 CALCRLQ16602 461 aa20.77■□□□□ 0.91
PCDH1-201ENST00000287008 GNPTABQ3T906 1256 aa20.77■□□□□ 0.91
PCDH1-201ENST00000287008 FAM173BQ6P4H8 233 aa20.77■□□□□ 0.91
PCDH1-201ENST00000287008 CCDC155Q8N6L0 562 aa20.77■□□□□ 0.91
PCDH1-201ENST00000287008 SDR42E1Q8WUS8 393 aa20.77■□□□□ 0.91
PCDH1-201ENST00000287008 ATP8A2Q9NTI2 1148 aa20.77■□□□□ 0.91
PCDH1-201ENST00000287008 BTDP43251 543 aa20.76■□□□□ 0.91
PCDH1-201ENST00000287008 CNGA4Q8IV77 575 aa20.76■□□□□ 0.91
PCDH1-201ENST00000287008 SEPT12Q8IYM1 358 aa20.76■□□□□ 0.91
PCDH1-201ENST00000287008 NOC4LQ9BVI4 516 aaKnown RBP20.76■□□□□ 0.91
PCDH1-201ENST00000287008 ABCA8O94911 1581 aa20.76■□□□□ 0.91
PCDH1-201ENST00000287008 CTR9Q6PD62 1173 aa20.76■□□□□ 0.91
PCDH1-201ENST00000287008 TMEM110-MUSTN1A8MSY1 372 aa20.76■□□□□ 0.91
PCDH1-201ENST00000287008 CCDC77Q9BR77 488 aa20.76■□□□□ 0.91
PCDH1-201ENST00000287008 MAGI3Q5TCQ9 1506 aa20.76■□□□□ 0.91
PCDH1-201ENST00000287008 PROSER3Q2NL68 480 aa20.76■□□□□ 0.91
PCDH1-201ENST00000287008 CCDC50Q8IVM0 306 aa20.76■□□□□ 0.91
PCDH1-201ENST00000287008 CDAN1Q8IWY9 1227 aa20.76■□□□□ 0.91
PCDH1-201ENST00000287008 PPP1R14CQ8TAE6 165 aa20.76■□□□□ 0.91
PCDH1-201ENST00000287008 HAUS7Q99871 368 aa20.76■□□□□ 0.91
PCDH1-201ENST00000287008 KCNJ14Q9UNX9 436 aa20.76■□□□□ 0.91
PCDH1-201ENST00000287008 TARBP1Q13395 1621 aaKnown RBP20.75■□□□□ 0.91
PCDH1-201ENST00000287008 GLG1Q92896 1179 aa20.75■□□□□ 0.91
PCDH1-201ENST00000287008 VPS54Q9P1Q0 977 aa20.75■□□□□ 0.91
PCDH1-201ENST00000287008 ICA1Q05084 483 aa20.75■□□□□ 0.91
PCDH1-201ENST00000287008 MAEAQ7L5Y9 396 aa20.75■□□□□ 0.91
PCDH1-201ENST00000287008 PNMA1Q8ND90 353 aa20.75■□□□□ 0.91
PCDH1-201ENST00000287008 TRAF3IP1Q8TDR0 691 aaPredicted RBP20.75■□□□□ 0.91
PCDH1-201ENST00000287008 ANKARQ7Z5J8 1434 aa20.75■□□□□ 0.91
PCDH1-201ENST00000287008 PRR36Q9H6K5 1346 aa20.75■□□□□ 0.91
PCDH1-201ENST00000287008 SMCO2A6NFE2 343 aa20.75■□□□□ 0.91
Retrieved 100 of 20,778 RNA–protein pairs in 13.1 ms