RNA–Protein interactions for RNA: ENST00000263274.11

LIG1-201, Transcript of DNA ligase 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIG1, Length 3,384 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-201ENST00000263274 CERS3Q8IU89 383 aa14.46□□□□□ -0.09
LIG1-201ENST00000263274 SMYD4Q8IYR2 804 aaPredicted RBP14.46□□□□□ -0.09
LIG1-201ENST00000263274 SPATA5Q8NB90 893 aa14.46□□□□□ -0.09
LIG1-201ENST00000263274 OXER1Q8TDS5 423 aa14.46□□□□□ -0.09
LIG1-201ENST00000263274 LY9Q9HBG7 655 aa14.46□□□□□ -0.09
LIG1-201ENST00000263274 SEC31BQ9NQW1 1179 aa14.46□□□□□ -0.09
LIG1-201ENST00000263274 PTPAQ15257 358 aa14.46□□□□□ -0.1
LIG1-201ENST00000263274 RESP18Q5W5W9 173 aa14.46□□□□□ -0.1
LIG1-201ENST00000263274 PPFIBP1Q86W92 1011 aa14.46□□□□□ -0.1
LIG1-201ENST00000263274 IGDCC4Q8TDY8 1250 aa14.46□□□□□ -0.1
LIG1-201ENST00000263274 BPIFA3Q9BQP9 254 aa14.46□□□□□ -0.1
LIG1-201ENST00000263274 IRX2Q9BZI1 471 aaPredicted RBP14.46□□□□□ -0.1
LIG1-201ENST00000263274 VPS54Q9P1Q0 977 aa14.46□□□□□ -0.1
LIG1-201ENST00000263274 MAN1B1Q9UKM7 699 aa14.46□□□□□ -0.1
LIG1-201ENST00000263274 WDR17Q8IZU2 1322 aa14.46□□□□□ -0.1
LIG1-201ENST00000263274 ADAMTS2O95450 1211 aa14.45□□□□□ -0.1
LIG1-201ENST00000263274 SLC5A1P13866 664 aa14.45□□□□□ -0.1
LIG1-201ENST00000263274 GABPB1Q06547 395 aaPredicted RBP14.45□□□□□ -0.1
LIG1-201ENST00000263274 FMR1Q06787 632 aaKnown RBP eCLIP14.45□□□□□ -0.17e-8■■□□□ 12.6
LIG1-201ENST00000263274 TERF2Q15554 542 aa14.45□□□□□ -0.1
LIG1-201ENST00000263274 DZIP3Q86Y13 1208 aaKnown RBP14.45□□□□□ -0.1
LIG1-201ENST00000263274 VSTM4Q8IW00 320 aa14.45□□□□□ -0.1
LIG1-201ENST00000263274 RASSF8Q8NHQ8 419 aa14.45□□□□□ -0.1
LIG1-201ENST00000263274 WASF1Q92558 559 aa14.45□□□□□ -0.1
LIG1-201ENST00000263274 PUF60Q9UHX1 559 aaKnown RBP14.45□□□□□ -0.1
LIG1-201ENST00000263274 CCDC66A2RUB6 948 aa14.45□□□□□ -0.1
LIG1-201ENST00000263274 PATL2C9JE40 543 aaKnown RBP14.45□□□□□ -0.1
LIG1-201ENST00000263274 IRX5P78411 483 aaPredicted RBP14.45□□□□□ -0.1
LIG1-201ENST00000263274 AKNAD1Q5T1N1 836 aa14.45□□□□□ -0.1
LIG1-201ENST00000263274 SPATA31A3Q5VYP0 1347 aa14.45□□□□□ -0.1
LIG1-201ENST00000263274 FAM205CA6NFA0 338 aa14.45□□□□□ -0.1
LIG1-201ENST00000263274 UQCRFS1P1P0C7P4 283 aa14.45□□□□□ -0.1
LIG1-201ENST00000263274 TOGARAM2Q6ZUX3 1019 aa14.45□□□□□ -0.1
LIG1-201ENST00000263274 TIGD1Q96MW7 591 aa14.45□□□□□ -0.1
LIG1-201ENST00000263274 ZNF446Q9NWS9 450 aa14.45□□□□□ -0.1
LIG1-201ENST00000263274 SLFN14P0C7P3 912 aa14.44□□□□□ -0.1
LIG1-201ENST00000263274 CYP7A1P22680 504 aa14.44□□□□□ -0.1
LIG1-201ENST00000263274 MTF1Q14872 753 aa14.44□□□□□ -0.1
LIG1-201ENST00000263274 UBE3CQ15386 1083 aa14.44□□□□□ -0.1
LIG1-201ENST00000263274 LCORLQ8N3X6 602 aa14.44□□□□□ -0.1
LIG1-201ENST00000263274 CERKQ8TCT0 537 aa14.44□□□□□ -0.1
LIG1-201ENST00000263274 WDR24Q96S15 920 aa14.44□□□□□ -0.1
LIG1-201ENST00000263274 TUBE1Q9UJT0 475 aa14.44□□□□□ -0.1
LIG1-201ENST00000263274 MAP3K15Q6ZN16 1313 aa14.44□□□□□ -0.1
LIG1-201ENST00000263274 ARHGAP6O43182 974 aa14.44□□□□□ -0.1
LIG1-201ENST00000263274 RASGRF1Q13972 1273 aa14.44□□□□□ -0.1
LIG1-201ENST00000263274 ZNF174Q15697 407 aa14.44□□□□□ -0.1
LIG1-201ENST00000263274 BRINP3Q76B58 766 aa14.44□□□□□ -0.1
LIG1-201ENST00000263274 EPSTI1Q96J88 318 aa14.44□□□□□ -0.1
LIG1-201ENST00000263274 EPB41L4AQ9HCS5 686 aaPredicted RBP14.44□□□□□ -0.1
LIG1-201ENST00000263274 MAPK8IP1Q9UQF2 711 aa14.44□□□□□ -0.1
LIG1-201ENST00000263274 CPDO75976 1380 aa14.44□□□□□ -0.1
LIG1-201ENST00000263274 SMIM22K7EJ46 135 aa14.43□□□□□ -0.1
LIG1-201ENST00000263274 BMP6P22004 513 aa14.43□□□□□ -0.1
LIG1-201ENST00000263274 CNPY4Q8N129 248 aa14.43□□□□□ -0.1
LIG1-201ENST00000263274 CSRNP2Q9H175 543 aa14.43□□□□□ -0.1
LIG1-201ENST00000263274 ZCCHC17Q9NP64 241 aaKnown RBP14.43□□□□□ -0.1
LIG1-201ENST00000263274 DACH1Q9UI36 760 aa14.43□□□□□ -0.1
LIG1-201ENST00000263274 MRC1P22897 1456 aa14.43□□□□□ -0.1
LIG1-201ENST00000263274 CSF1RP07333 972 aa14.43□□□□□ -0.1
LIG1-201ENST00000263274 CCT6AP40227 531 aaKnown RBP14.43□□□□□ -0.1
LIG1-201ENST00000263274 PUM3Q15397 648 aaKnown RBP14.43□□□□□ -0.1
LIG1-201ENST00000263274 MAP3K14Q99558 947 aa14.43□□□□□ -0.1
LIG1-201ENST00000263274 KRT23Q9C075 422 aa14.43□□□□□ -0.1
LIG1-201ENST00000263274 HSD3B7Q9H2F3 369 aa14.43□□□□□ -0.1
LIG1-201ENST00000263274 FAM217BQ9NTX9 383 aaPredicted RBP14.43□□□□□ -0.1
LIG1-201ENST00000263274 SLIT3O75094 1523 aa14.43□□□□□ -0.1
LIG1-201ENST00000263274 BAZ2BQ9UIF8 2168 aaKnown RBP14.43□□□□□ -0.1
LIG1-201ENST00000263274 CYP2D7A0A087X1C5 515 aa14.43□□□□□ -0.1
LIG1-201ENST00000263274 DHX8Q14562 1220 aaKnown RBP14.43□□□□□ -0.1
LIG1-201ENST00000263274 NTRK3Q16288 839 aa14.43□□□□□ -0.1
LIG1-201ENST00000263274 SPECC1LQ69YQ0 1117 aa14.43□□□□□ -0.1
LIG1-201ENST00000263274 LPIN2Q92539 896 aa14.43□□□□□ -0.1
LIG1-201ENST00000263274 HPSEQ9Y251 543 aa14.43□□□□□ -0.1
LIG1-201ENST00000263274 V9GY48 417 aaPredicted RBP14.43□□□□□ -0.1
LIG1-201ENST00000263274 PDE8AO60658 829 aa14.42□□□□□ -0.1
LIG1-201ENST00000263274 MMP1P03956 469 aa14.42□□□□□ -0.1
LIG1-201ENST00000263274 PPP2R3AQ06190 1150 aa14.42□□□□□ -0.1
LIG1-201ENST00000263274 TEX33O43247 280 aa14.42□□□□□ -0.1
LIG1-201ENST00000263274 PNMA6AP0CW24 399 aaPredicted RBP14.42□□□□□ -0.1
LIG1-201ENST00000263274 XBP1P17861 261 aa14.42□□□□□ -0.1
LIG1-201ENST00000263274 TEX13AQ9BXU3 409 aaPredicted RBP14.42□□□□□ -0.1
LIG1-201ENST00000263274 VWA3AA6NCI4 1184 aa14.42□□□□□ -0.1
LIG1-201ENST00000263274 SOWAHDA6NJG2 315 aa14.42□□□□□ -0.1
LIG1-201ENST00000263274 TOB1P50616 345 aaPredicted RBP14.42□□□□□ -0.1
LIG1-201ENST00000263274 KIF4BQ2VIQ3 1234 aa14.42□□□□□ -0.1
LIG1-201ENST00000263274 RILPL1Q5EBL4 403 aa14.42□□□□□ -0.1
LIG1-201ENST00000263274 REXO1L1PQ8IX06 675 aa14.42□□□□□ -0.1
LIG1-201ENST00000263274 ZNF654Q8IZM8 581 aa14.42□□□□□ -0.1
LIG1-201ENST00000263274 BLZF1Q9H2G9 400 aa14.42□□□□□ -0.1
LIG1-201ENST00000263274 CNNM2Q9H8M5 875 aa14.42□□□□□ -0.1
LIG1-201ENST00000263274 L2HGDHQ9H9P8 463 aa14.42□□□□□ -0.1
LIG1-201ENST00000263274 RNF216Q9NWF9 866 aaPredicted RBP14.42□□□□□ -0.1
LIG1-201ENST00000263274 FBXO3Q9UK99 471 aa14.42□□□□□ -0.1
LIG1-201ENST00000263274 STRCQ7RTU9 1775 aa14.41□□□□□ -0.1
LIG1-201ENST00000263274 CCDC196A0A1B0GTZ2 297 aa14.41□□□□□ -0.1
LIG1-201ENST00000263274 TRIM75PA6NK02 468 aa14.41□□□□□ -0.1
LIG1-201ENST00000263274 FMNL1O95466 1100 aaPredicted RBP14.41□□□□□ -0.1
LIG1-201ENST00000263274 FANCBQ8NB91 859 aa14.41□□□□□ -0.1
LIG1-201ENST00000263274 JAG2Q9Y219 1238 aa14.41□□□□□ -0.1
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms