RNA–Protein interactions for RNA: ENST00000262327.9

LIG3-201, Transcript of DNA ligase 3, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIG3, Length 3,055 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-201ENST00000262327 ZBTB43O43298 467 aa11.56□□□□□ -0.56
LIG3-201ENST00000262327 PRKAB2O43741 272 aa11.56□□□□□ -0.56
LIG3-201ENST00000262327 BMP6P22004 513 aa11.56□□□□□ -0.56
LIG3-201ENST00000262327 PTPAQ15257 358 aa11.56□□□□□ -0.56
LIG3-201ENST00000262327 KRT222Q8N1A0 295 aa11.56□□□□□ -0.56
LIG3-201ENST00000262327 TACC3Q9Y6A5 838 aa11.56□□□□□ -0.56
LIG3-201ENST00000262327 ZMYM6O95789 1325 aa11.55□□□□□ -0.56
LIG3-201ENST00000262327 hCG_1642624A0A1W2PR95 340 aa11.55□□□□□ -0.56
LIG3-201ENST00000262327 RGL2O15211 777 aa11.55□□□□□ -0.56
LIG3-201ENST00000262327 SLFN14P0C7P3 912 aa11.55□□□□□ -0.56
LIG3-201ENST00000262327 PRR29P0C7W0 189 aa11.55□□□□□ -0.56
LIG3-201ENST00000262327 ADKP55263 362 aaKnown RBP11.55□□□□□ -0.56
LIG3-201ENST00000262327 MYL5Q02045 173 aa11.55□□□□□ -0.56
LIG3-201ENST00000262327 DDX24Q9GZR7 859 aaKnown RBP eCLIP11.55□□□□□ -0.569e-7■□□□□ 9.1
LIG3-201ENST00000262327 ARMT1Q9H993 441 aa11.55□□□□□ -0.56
LIG3-201ENST00000262327 KCNH3Q9ULD8 1083 aa11.55□□□□□ -0.56
LIG3-201ENST00000262327 SMIM22K7EJ46 135 aa11.55□□□□□ -0.56
LIG3-201ENST00000262327 IFIT3O14879 490 aaKnown RBP11.55□□□□□ -0.56
LIG3-201ENST00000262327 TOP1P11387 765 aaKnown RBP11.55□□□□□ -0.56
LIG3-201ENST00000262327 HMGB2P26583 209 aaKnown RBP11.55□□□□□ -0.56
LIG3-201ENST00000262327 TRIM29Q14134 588 aa11.55□□□□□ -0.56
LIG3-201ENST00000262327 DZIP3Q86Y13 1208 aaKnown RBP11.55□□□□□ -0.56
LIG3-201ENST00000262327 AIDAQ96BJ3 306 aa11.55□□□□□ -0.56
LIG3-201ENST00000262327 FAM217BQ9NTX9 383 aaPredicted RBP11.55□□□□□ -0.56
LIG3-201ENST00000262327 IQSEC3Q9UPP2 1182 aaPredicted RBP11.55□□□□□ -0.56
LIG3-201ENST00000262327 RIPOR2Q9Y4F9 1068 aa11.55□□□□□ -0.56
LIG3-201ENST00000262327 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP11.55□□□□□ -0.56
LIG3-201ENST00000262327 COBLO75128 1261 aa11.54□□□□□ -0.56
LIG3-201ENST00000262327 SEC31AO94979 1220 aaKnown RBP11.54□□□□□ -0.56
LIG3-201ENST00000262327 PDE6AP16499 860 aa11.54□□□□□ -0.56
LIG3-201ENST00000262327 CLCN6P51797 869 aa11.54□□□□□ -0.56
LIG3-201ENST00000262327 NR5A1Q13285 461 aa11.54□□□□□ -0.56
LIG3-201ENST00000262327 FAM182BQ5T319 152 aa11.54□□□□□ -0.56
LIG3-201ENST00000262327 USP49Q70CQ1 688 aa11.54□□□□□ -0.56
LIG3-201ENST00000262327 PTF1AQ7RTS3 328 aa11.54□□□□□ -0.56
LIG3-201ENST00000262327 LINC00116Q8NCU8 138 aa11.54□□□□□ -0.56
LIG3-201ENST00000262327 TTLL11Q8NHH1 800 aa11.54□□□□□ -0.56
LIG3-201ENST00000262327 MAP3K14Q99558 947 aa11.54□□□□□ -0.56
LIG3-201ENST00000262327 BPIFA3Q9BQP9 254 aa11.54□□□□□ -0.56
LIG3-201ENST00000262327 GNL3Q9BVP2 549 aaKnown RBP eCLIP11.54□□□□□ -0.56
LIG3-201ENST00000262327 CARD6Q9BX69 1037 aa11.54□□□□□ -0.56
LIG3-201ENST00000262327 INTS13Q9NVM9 706 aa11.54□□□□□ -0.56
LIG3-201ENST00000262327 ZSWIM5Q9P217 1185 aa11.54□□□□□ -0.56
LIG3-201ENST00000262327 UBN2Q6ZU65 1347 aa11.54□□□□□ -0.56
LIG3-201ENST00000262327 LY75O60449 1722 aa11.54□□□□□ -0.56
LIG3-201ENST00000262327 NRDCO43847 1150 aa11.54□□□□□ -0.56
LIG3-201ENST00000262327 CASP1P29466 404 aa11.54□□□□□ -0.56
LIG3-201ENST00000262327 CCDC102BQ68D86 513 aa11.54□□□□□ -0.56
LIG3-201ENST00000262327 OLFM4Q6UX06 510 aa11.54□□□□□ -0.56
LIG3-201ENST00000262327 PPIL4Q8WUA2 492 aaKnown RBP eCLIP11.54□□□□□ -0.56
LIG3-201ENST00000262327 NUP133Q8WUM0 1156 aa11.54□□□□□ -0.56
LIG3-201ENST00000262327 CHMP4CQ96CF2 233 aa11.54□□□□□ -0.56
LIG3-201ENST00000262327 DESI2Q9BSY9 194 aa11.54□□□□□ -0.56
LIG3-201ENST00000262327 TBC1D2BQ9UPU7 963 aa11.54□□□□□ -0.56
LIG3-201ENST00000262327 BRWD3Q6RI45 1802 aa11.54□□□□□ -0.56
LIG3-201ENST00000262327 POLR2DO15514 142 aaKnown RBP11.54□□□□□ -0.56
LIG3-201ENST00000262327 MBD4O95243 580 aa11.54□□□□□ -0.56
LIG3-201ENST00000262327 RXRBP28702 533 aa11.54□□□□□ -0.56
LIG3-201ENST00000262327 ETF1P62495 437 aaKnown RBP11.54□□□□□ -0.56
LIG3-201ENST00000262327 FMR1Q06787 632 aaKnown RBP eCLIP11.54□□□□□ -0.565e-6■■■■□ 22.9
LIG3-201ENST00000262327 FBXL16Q8N461 479 aa11.54□□□□□ -0.56
LIG3-201ENST00000262327 MAGEB6Q8N7X4 407 aa11.54□□□□□ -0.56
LIG3-201ENST00000262327 MIGA1Q8NAN2 632 aa11.54□□□□□ -0.56
LIG3-201ENST00000262327 IGDCC4Q8TDY8 1250 aa11.54□□□□□ -0.56
LIG3-201ENST00000262327 LY9Q9HBG7 655 aa11.54□□□□□ -0.56
LIG3-201ENST00000262327 TRMT112Q9UI30 125 aaKnown RBP11.54□□□□□ -0.56
LIG3-201ENST00000262327 TUBE1Q9UJT0 475 aa11.54□□□□□ -0.56
LIG3-201ENST00000262327 HPSEQ9Y251 543 aa11.54□□□□□ -0.56
LIG3-201ENST00000262327 PCCAP05165 728 aaPredicted RBP11.53□□□□□ -0.56
LIG3-201ENST00000262327 NTRK3Q16288 839 aa11.53□□□□□ -0.56
LIG3-201ENST00000262327 CPLX2Q6PUV4 134 aaKnown RBP11.53□□□□□ -0.56
LIG3-201ENST00000262327 KRBA2Q6ZNG9 492 aa11.53□□□□□ -0.56
LIG3-201ENST00000262327 ZBTB38Q8NAP3 1195 aaPredicted RBP11.53□□□□□ -0.56
LIG3-201ENST00000262327 ZSWIM4Q9H7M6 989 aa11.53□□□□□ -0.56
LIG3-201ENST00000262327 EPB41L4AQ9HCS5 686 aaPredicted RBP11.53□□□□□ -0.56
LIG3-201ENST00000262327 SERTAD1Q9UHV2 236 aa11.53□□□□□ -0.56
LIG3-201ENST00000262327 SLC12A7Q9Y666 1083 aa11.53□□□□□ -0.56
LIG3-201ENST00000262327 PSDA5PKW4 1024 aaPredicted RBP11.53□□□□□ -0.56
LIG3-201ENST00000262327 IRS4O14654 1257 aaPredicted RBP11.53□□□□□ -0.56
LIG3-201ENST00000262327 KARSQ15046 597 aaKnown RBP11.53□□□□□ -0.56
LIG3-201ENST00000262327 TERF2Q15554 542 aa11.53□□□□□ -0.56
LIG3-201ENST00000262327 RESP18Q5W5W9 173 aa11.53□□□□□ -0.56
LIG3-201ENST00000262327 TRIM65Q6PJ69 517 aa11.53□□□□□ -0.56
LIG3-201ENST00000262327 MNS1Q8NEH6 495 aa11.53□□□□□ -0.56
LIG3-201ENST00000262327 NAPBQ9H115 298 aa11.53□□□□□ -0.56
LIG3-201ENST00000262327 L2HGDHQ9H9P8 463 aa11.53□□□□□ -0.56
LIG3-201ENST00000262327 SEC31BQ9NQW1 1179 aa11.53□□□□□ -0.56
LIG3-201ENST00000262327 CCNL1Q9UK58 526 aaPredicted RBP11.53□□□□□ -0.56
LIG3-201ENST00000262327 ANKRD18BA2A2Z9 1011 aa11.52□□□□□ -0.56
LIG3-201ENST00000262327 FAM205CA6NFA0 338 aa11.52□□□□□ -0.56
LIG3-201ENST00000262327 IKBKBO14920 756 aa11.52□□□□□ -0.56
LIG3-201ENST00000262327 CSF1RP07333 972 aa11.52□□□□□ -0.56
LIG3-201ENST00000262327 TOB1P50616 345 aaPredicted RBP11.52□□□□□ -0.56
LIG3-201ENST00000262327 STX17P56962 302 aa11.52□□□□□ -0.56
LIG3-201ENST00000262327 CCDC93Q567U6 631 aa11.52□□□□□ -0.56
LIG3-201ENST00000262327 KLHL10Q6JEL2 608 aa11.52□□□□□ -0.56
LIG3-201ENST00000262327 REXO1L1PQ8IX06 675 aa11.52□□□□□ -0.56
LIG3-201ENST00000262327 DIS3L2Q8IYB7 885 aaKnown RBP11.52□□□□□ -0.56
LIG3-201ENST00000262327 JMYQ8N9B5 988 aa11.52□□□□□ -0.56
LIG3-201ENST00000262327 OXER1Q8TDS5 423 aa11.52□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 21.1 ms