RNA–Protein interactions for RNA: ENST00000261517.9

VPS13C-202, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS13C, Length 13,400 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-202ENST00000261517 SPATA24Q86W54 205 aa4.84□□□□□ -1.63
VPS13C-202ENST00000261517 PLCD3Q8N3E9 789 aa4.84□□□□□ -1.63
VPS13C-202ENST00000261517 PPRC1Q5VV67 1664 aaKnown RBP4.84□□□□□ -1.63
VPS13C-202ENST00000261517 PSDA5PKW4 1024 aaPredicted RBP4.84□□□□□ -1.63
VPS13C-202ENST00000261517 ADAMTS2O95450 1211 aa4.84□□□□□ -1.63
VPS13C-202ENST00000261517 C16orf71Q8IYS4 520 aaPredicted RBP4.84□□□□□ -1.63
VPS13C-202ENST00000261517 GOLGA1Q92805 767 aa4.84□□□□□ -1.63
VPS13C-202ENST00000261517 BICD1Q96G01 975 aa4.84□□□□□ -1.63
VPS13C-202ENST00000261517 HOMER2Q9NSB8 354 aa4.84□□□□□ -1.63
VPS13C-202ENST00000261517 KIDINS220Q9ULH0 1771 aa4.84□□□□□ -1.63
VPS13C-202ENST00000261517 SRGAP1Q7Z6B7 1085 aa4.84□□□□□ -1.63
VPS13C-202ENST00000261517 DHX36Q9H2U1 1008 aaKnown RBP4.84□□□□□ -1.63
VPS13C-202ENST00000261517 CTAGE15A4D2H0 777 aa4.84□□□□□ -1.63
VPS13C-202ENST00000261517 ZBED4O75132 1171 aa4.84□□□□□ -1.63
VPS13C-202ENST00000261517 BBOX1O75936 387 aa4.84□□□□□ -1.63
VPS13C-202ENST00000261517 CTAGE8P0CG41 777 aa4.84□□□□□ -1.63
VPS13C-202ENST00000261517 DNM2P50570 870 aa4.84□□□□□ -1.63
VPS13C-202ENST00000261517 ODR4Q5SWX8 454 aa4.84□□□□□ -1.63
VPS13C-202ENST00000261517 CTAGE6Q86UF2 777 aa4.84□□□□□ -1.63
VPS13C-202ENST00000261517 CTAGE4Q8IX94 777 aa4.84□□□□□ -1.63
VPS13C-202ENST00000261517 RETREG2Q8NC44 543 aa4.84□□□□□ -1.63
VPS13C-202ENST00000261517 CCDC110Q8TBZ0 833 aa4.84□□□□□ -1.63
VPS13C-202ENST00000261517 CCNL1Q9UK58 526 aaPredicted RBP4.84□□□□□ -1.63
VPS13C-202ENST00000261517 STX8Q9UNK0 236 aa4.84□□□□□ -1.63
VPS13C-202ENST00000261517 BCRP11274 1271 aa4.84□□□□□ -1.64
VPS13C-202ENST00000261517 BAG6P46379 1132 aa4.84□□□□□ -1.64
VPS13C-202ENST00000261517 ASIC1P78348 528 aa4.84□□□□□ -1.64
VPS13C-202ENST00000261517 MYL5Q02045 173 aa4.84□□□□□ -1.64
VPS13C-202ENST00000261517 ATP5J2-PTCD1G3V325 749 aa4.84□□□□□ -1.64
VPS13C-202ENST00000261517 THAP12O43422 761 aa4.84□□□□□ -1.64
VPS13C-202ENST00000261517 ACTN4O43707 911 aaKnown RBP4.84□□□□□ -1.64
VPS13C-202ENST00000261517 SLC4A3P48751 1232 aa4.84□□□□□ -1.64
VPS13C-202ENST00000261517 ZSCAN23Q3MJ62 389 aa4.84□□□□□ -1.64
VPS13C-202ENST00000261517 GNPTABQ3T906 1256 aa4.84□□□□□ -1.64
VPS13C-202ENST00000261517 C10orf76Q5T2E6 689 aa4.84□□□□□ -1.64
VPS13C-202ENST00000261517 PATL2C9JE40 543 aaKnown RBP4.84□□□□□ -1.64
VPS13C-202ENST00000261517 F6X3S4 739 aa4.84□□□□□ -1.64
VPS13C-202ENST00000261517 EIF4A1P60842 406 aaKnown RBP4.84□□□□□ -1.64
VPS13C-202ENST00000261517 TMTC1Q8IUR5 882 aa4.84□□□□□ -1.64
VPS13C-202ENST00000261517 MAGEB6Q8N7X4 407 aa4.84□□□□□ -1.64
VPS13C-202ENST00000261517 HAUS7Q99871 368 aa4.84□□□□□ -1.64
VPS13C-202ENST00000261517 BICC1Q9H694 974 aaKnown RBP4.84□□□□□ -1.64
VPS13C-202ENST00000261517 SH3GLB2Q9NR46 395 aa4.84□□□□□ -1.64
VPS13C-202ENST00000261517 DONSONQ9NYP3 566 aa4.84□□□□□ -1.64
VPS13C-202ENST00000261517 USP14P54578 494 aa4.83□□□□□ -1.64
VPS13C-202ENST00000261517 ASPRV1Q53RT3 343 aa4.83□□□□□ -1.64
VPS13C-202ENST00000261517 TIGD1Q96MW7 591 aa4.83□□□□□ -1.64
VPS13C-202ENST00000261517 METTL14Q9HCE5 456 aaKnown RBP4.83□□□□□ -1.64
VPS13C-202ENST00000261517 PLCB1Q9NQ66 1216 aa4.83□□□□□ -1.64
VPS13C-202ENST00000261517 LUC7L2Q9Y383 392 aaKnown RBP4.83□□□□□ -1.64
VPS13C-202ENST00000261517 SAMM50Q9Y512 469 aa4.83□□□□□ -1.64
VPS13C-202ENST00000261517 ADCY5O95622 1261 aa4.83□□□□□ -1.64
VPS13C-202ENST00000261517 C8orf58Q8NAV2 365 aa4.83□□□□□ -1.64
VPS13C-202ENST00000261517 THUMPD2Q9BTF0 503 aaKnown RBP4.83□□□□□ -1.64
VPS13C-202ENST00000261517 SYNCQ9H7C4 482 aa4.83□□□□□ -1.64
VPS13C-202ENST00000261517 TNS3Q68CZ2 1445 aa4.83□□□□□ -1.64
VPS13C-202ENST00000261517 MTMR3Q13615 1198 aa4.83□□□□□ -1.64
VPS13C-202ENST00000261517 NLRX1Q86UT6 975 aa4.83□□□□□ -1.64
VPS13C-202ENST00000261517 SPC24Q8NBT2 197 aa4.83□□□□□ -1.64
VPS13C-202ENST00000261517 HSPA4P34932 840 aa4.83□□□□□ -1.64
VPS13C-202ENST00000261517 NMIQ13287 307 aaPredicted RBP4.83□□□□□ -1.64
VPS13C-202ENST00000261517 CEP135Q66GS9 1140 aa4.83□□□□□ -1.64
VPS13C-202ENST00000261517 NIM1KQ8IY84 436 aa4.83□□□□□ -1.64
VPS13C-202ENST00000261517 TRIM11Q96F44 468 aa4.83□□□□□ -1.64
VPS13C-202ENST00000261517 MRPL11Q9Y3B7 192 aaKnown RBP4.83□□□□□ -1.64
VPS13C-202ENST00000261517 MAP3K15Q6ZN16 1313 aa4.83□□□□□ -1.64
VPS13C-202ENST00000261517 KDM2BQ8NHM5 1336 aa4.83□□□□□ -1.64
VPS13C-202ENST00000261517 NRXN1Q9ULB1 1477 aa4.83□□□□□ -1.64
VPS13C-202ENST00000261517 SPATS2Q86XZ4 545 aaKnown RBP4.83□□□□□ -1.64
VPS13C-202ENST00000261517 HOMEZQ8IX15 550 aa4.83□□□□□ -1.64
VPS13C-202ENST00000261517 MYO1AQ9UBC5 1043 aa4.83□□□□□ -1.64
VPS13C-202ENST00000261517 NEURL1BA8MQ27 555 aa4.83□□□□□ -1.64
VPS13C-202ENST00000261517 FLOT1O75955 427 aa4.83□□□□□ -1.64
VPS13C-202ENST00000261517 TNNT1P13805 278 aa4.83□□□□□ -1.64
VPS13C-202ENST00000261517 ZNF445P59923 1031 aa4.83□□□□□ -1.64
VPS13C-202ENST00000261517 XPCQ01831 940 aaPredicted RBP4.83□□□□□ -1.64
VPS13C-202ENST00000261517 CYP26C1Q6V0L0 522 aa4.83□□□□□ -1.64
VPS13C-202ENST00000261517 USP48Q86UV5 1035 aa4.83□□□□□ -1.64
VPS13C-202ENST00000261517 ZNF622Q969S3 477 aaKnown RBP eCLIP4.83□□□□□ -1.642e-6■■□□□ 14.2
VPS13C-202ENST00000261517 CARD14Q9BXL6 1004 aa4.83□□□□□ -1.64
VPS13C-202ENST00000261517 SPC25Q9HBM1 224 aa4.83□□□□□ -1.64
VPS13C-202ENST00000261517 MCM9Q9NXL9 1143 aa4.83□□□□□ -1.64
VPS13C-202ENST00000261517 BPIFB4P59827 614 aa4.83□□□□□ -1.64
VPS13C-202ENST00000261517 PPP2R5AQ15172 486 aa4.83□□□□□ -1.64
VPS13C-202ENST00000261517 TTLL5Q6EMB2 1281 aa4.83□□□□□ -1.64
VPS13C-202ENST00000261517 HEATR3Q7Z4Q2 680 aa4.83□□□□□ -1.64
VPS13C-202ENST00000261517 TEX11Q8IYF3 940 aa4.83□□□□□ -1.64
VPS13C-202ENST00000261517 TTC39CQ8N584 583 aa4.83□□□□□ -1.64
VPS13C-202ENST00000261517 BRF1Q92994 677 aa4.83□□□□□ -1.64
VPS13C-202ENST00000261517 GINM1Q9NU53 330 aa4.83□□□□□ -1.64
VPS13C-202ENST00000261517 MIS18AQ9NYP9 233 aa4.83□□□□□ -1.64
VPS13C-202ENST00000261517 STRN3Q13033 797 aa4.83□□□□□ -1.64
VPS13C-202ENST00000261517 TRMT2AQ8IZ69 625 aaKnown RBP4.83□□□□□ -1.64
VPS13C-202ENST00000261517 BCORL1Q5H9F3 1711 aa4.83□□□□□ -1.64
VPS13C-202ENST00000261517 ANKRD26Q9UPS8 1709 aa4.83□□□□□ -1.64
VPS13C-202ENST00000261517 GOLGA8QA0A0J9YX86 632 aa4.83□□□□□ -1.64
VPS13C-202ENST00000261517 GOLGA8OA6NCC3 632 aa4.83□□□□□ -1.64
VPS13C-202ENST00000261517 GOLGA8NF8WBI6 632 aa4.83□□□□□ -1.64
VPS13C-202ENST00000261517 CETN3O15182 167 aa4.83□□□□□ -1.64
VPS13C-202ENST00000261517 RBM6P78332 1123 aaKnown RBP4.83□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 9.6 ms