RNA–Protein interactions for RNA: ENST00000254950.12

VPS4A-201, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS4A, Length 4,100 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-201ENST00000254950 ZMYM6O95789 1325 aa13.33□□□□□ -0.27
VPS4A-201ENST00000254950 TRIM75PA6NK02 468 aa13.33□□□□□ -0.28
VPS4A-201ENST00000254950 POLRMTO00411 1230 aaKnown RBP13.33□□□□□ -0.28
VPS4A-201ENST00000254950 CHGBP05060 677 aa13.33□□□□□ -0.28
VPS4A-201ENST00000254950 USP17L8P0C7I0 530 aa13.33□□□□□ -0.28
VPS4A-201ENST00000254950 KRT2P35908 639 aa13.33□□□□□ -0.28
VPS4A-201ENST00000254950 TSGA10IPQ3SY00 556 aa13.33□□□□□ -0.28
VPS4A-201ENST00000254950 APOA5Q6Q788 366 aa13.33□□□□□ -0.28
VPS4A-201ENST00000254950 FANCBQ8NB91 859 aa13.33□□□□□ -0.28
VPS4A-201ENST00000254950 TAOK3Q9H2K8 898 aa13.33□□□□□ -0.28
VPS4A-201ENST00000254950 ATRNO75882 1429 aa13.33□□□□□ -0.28
VPS4A-201ENST00000254950 KCPQ6ZWJ8 1503 aa13.33□□□□□ -0.28
VPS4A-201ENST00000254950 KIF2CQ99661 725 aa13.33□□□□□ -0.28
VPS4A-201ENST00000254950 LZTS2Q9BRK4 669 aa13.33□□□□□ -0.28
VPS4A-201ENST00000254950 GRPEL1Q9HAV7 217 aa13.33□□□□□ -0.28
VPS4A-201ENST00000254950 CYP2D7A0A087X1C5 515 aa13.32□□□□□ -0.28
VPS4A-201ENST00000254950 GNA11P29992 359 aa13.32□□□□□ -0.28
VPS4A-201ENST00000254950 NT5C2P49902 561 aa13.32□□□□□ -0.28
VPS4A-201ENST00000254950 NSUN4Q96CB9 384 aaKnown RBP13.32□□□□□ -0.28
VPS4A-201ENST00000254950 ARHGEF10LQ9HCE6 1279 aa13.32□□□□□ -0.28
VPS4A-201ENST00000254950 ZSWIM5Q9P217 1185 aa13.32□□□□□ -0.28
VPS4A-201ENST00000254950 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP13.32□□□□□ -0.28
VPS4A-201ENST00000254950 LRRC37A3O60309 1634 aa13.32□□□□□ -0.28
VPS4A-201ENST00000254950 GSG1L2A8MUP6 293 aa13.32□□□□□ -0.28
VPS4A-201ENST00000254950 ECE2O60344 883 aa13.32□□□□□ -0.28
VPS4A-201ENST00000254950 SCRN1Q12765 414 aa13.32□□□□□ -0.28
VPS4A-201ENST00000254950 R3HDM1Q15032 1099 aaKnown RBP13.32□□□□□ -0.28
VPS4A-201ENST00000254950 PNMA1Q8ND90 353 aa13.32□□□□□ -0.28
VPS4A-201ENST00000254950 HOOK2Q96ED9 719 aa13.32□□□□□ -0.28
VPS4A-201ENST00000254950 MROH7-TTC4A0A0A0MT08 1334 aa13.32□□□□□ -0.28
VPS4A-201ENST00000254950 SPTLC2O15270 562 aa13.32□□□□□ -0.28
VPS4A-201ENST00000254950 NF2P35240 595 aa13.32□□□□□ -0.28
VPS4A-201ENST00000254950 DDR1Q08345 913 aa13.32□□□□□ -0.28
VPS4A-201ENST00000254950 TMEM266Q2M3C6 531 aa13.32□□□□□ -0.28
VPS4A-201ENST00000254950 IL25Q9H293 177 aa13.32□□□□□ -0.28
VPS4A-201ENST00000254950 EHMT1Q9H9B1 1298 aa13.32□□□□□ -0.28
VPS4A-201ENST00000254950 DACH1Q9UI36 760 aa13.32□□□□□ -0.28
VPS4A-201ENST00000254950 SUGT1Q9Y2Z0 365 aa13.32□□□□□ -0.28
VPS4A-201ENST00000254950 KRT18P05783 430 aaKnown RBP13.32□□□□□ -0.28
VPS4A-201ENST00000254950 OTUD7BQ6GQQ9 843 aa13.32□□□□□ -0.28
VPS4A-201ENST00000254950 TDRD7Q8NHU6 1098 aaKnown RBP13.32□□□□□ -0.28
VPS4A-201ENST00000254950 CCDC17Q96LX7 622 aa13.32□□□□□ -0.28
VPS4A-201ENST00000254950 GPCPD1Q9NPB8 672 aa13.32□□□□□ -0.28
VPS4A-201ENST00000254950 SERPINB13Q9UIV8 391 aa13.32□□□□□ -0.28
VPS4A-201ENST00000254950 TPM1P09493 284 aa13.31□□□□□ -0.28
VPS4A-201ENST00000254950 LIFRP42702 1097 aa13.31□□□□□ -0.28
VPS4A-201ENST00000254950 AOC3Q16853 763 aa13.31□□□□□ -0.28
VPS4A-201ENST00000254950 KRT40Q6A162 431 aa13.31□□□□□ -0.28
VPS4A-201ENST00000254950 CDC37L1Q7L3B6 337 aa13.31□□□□□ -0.28
VPS4A-201ENST00000254950 SH3RF3Q8TEJ3 882 aaPredicted RBP13.31□□□□□ -0.28
VPS4A-201ENST00000254950 STAG1Q8WVM7 1258 aa13.31□□□□□ -0.28
VPS4A-201ENST00000254950 SH2B2O14492 632 aaPredicted RBP13.31□□□□□ -0.28
VPS4A-201ENST00000254950 SMC2O95347 1197 aa13.31□□□□□ -0.28
VPS4A-201ENST00000254950 SRGNP10124 158 aa13.31□□□□□ -0.28
VPS4A-201ENST00000254950 ZNF827Q17R98 1081 aa13.31□□□□□ -0.28
VPS4A-201ENST00000254950 CIAPIN1Q6FI81 312 aa13.31□□□□□ -0.28
VPS4A-201ENST00000254950 DIS3L2Q8IYB7 885 aaKnown RBP13.31□□□□□ -0.28
VPS4A-201ENST00000254950 DCP1AQ9NPI6 582 aaPredicted RBP13.31□□□□□ -0.28
VPS4A-201ENST00000254950 CLIP2Q9UDT6 1046 aa13.31□□□□□ -0.28
VPS4A-201ENST00000254950 TCP10L2B9ZVM9 353 aa13.31□□□□□ -0.28
VPS4A-201ENST00000254950 DDAH1O94760 285 aa13.31□□□□□ -0.28
VPS4A-201ENST00000254950 FAM173BQ6P4H8 233 aa13.31□□□□□ -0.28
VPS4A-201ENST00000254950 TBC1D10CQ8IV04 446 aa13.31□□□□□ -0.28
VPS4A-201ENST00000254950 MRPS27Q92552 414 aaKnown RBP13.31□□□□□ -0.28
VPS4A-201ENST00000254950 TTC14Q96N46 770 aa13.31□□□□□ -0.28
VPS4A-201ENST00000254950 TRIM5Q9C035 493 aa13.31□□□□□ -0.28
VPS4A-201ENST00000254950 BMP2KQ9NSY1 1161 aaPredicted RBP13.31□□□□□ -0.28
VPS4A-201ENST00000254950 SWAP70Q9UH65 585 aa13.31□□□□□ -0.28
VPS4A-201ENST00000254950 SCN11AQ9UI33 1791 aa13.31□□□□□ -0.28
VPS4A-201ENST00000254950 MYO3BQ8WXR4 1341 aa13.3□□□□□ -0.28
VPS4A-201ENST00000254950 A0A0G2JLW4 131 aa13.3□□□□□ -0.28
VPS4A-201ENST00000254950 POTEAQ6S8J7 498 aa13.3□□□□□ -0.28
VPS4A-201ENST00000254950 MTMR6Q9Y217 621 aa13.3□□□□□ -0.28
VPS4A-201ENST00000254950 SLC1A4P43007 532 aa13.3□□□□□ -0.28
VPS4A-201ENST00000254950 CNNM3Q8NE01 707 aa13.3□□□□□ -0.28
VPS4A-201ENST00000254950 DHX36Q9H2U1 1008 aaKnown RBP13.3□□□□□ -0.28
VPS4A-201ENST00000254950 TCP11L1Q9NUJ3 509 aa13.3□□□□□ -0.28
VPS4A-201ENST00000254950 CCDC39Q9UFE4 941 aa13.3□□□□□ -0.28
VPS4A-201ENST00000254950 COL16A1Q07092 1604 aaPredicted RBP13.3□□□□□ -0.28
VPS4A-201ENST00000254950 LARGE1O95461 756 aa13.3□□□□□ -0.28
VPS4A-201ENST00000254950 TOP1P11387 765 aaKnown RBP13.3□□□□□ -0.28
VPS4A-201ENST00000254950 CERKLQ49MI3 558 aaPredicted RBP13.3□□□□□ -0.28
VPS4A-201ENST00000254950 SSBP05455 408 aaKnown RBP eCLIP13.29□□□□□ -0.28
VPS4A-201ENST00000254950 KLRK1P26718 216 aa13.29□□□□□ -0.28
VPS4A-201ENST00000254950 MARCKSP29966 332 aaPredicted RBP13.29□□□□□ -0.28
VPS4A-201ENST00000254950 UBA7P41226 1012 aa13.29□□□□□ -0.28
VPS4A-201ENST00000254950 CRKP46108 304 aa13.29□□□□□ -0.28
VPS4A-201ENST00000254950 RILPL1Q5EBL4 403 aa13.29□□□□□ -0.28
VPS4A-201ENST00000254950 CKAP2LQ8IYA6 745 aa13.29□□□□□ -0.28
VPS4A-201ENST00000254950 VGLL2Q8N8G2 317 aa13.29□□□□□ -0.28
VPS4A-201ENST00000254950 CLEC11AQ9Y240 323 aa13.29□□□□□ -0.28
VPS4A-201ENST00000254950 PSDA5PKW4 1024 aaPredicted RBP13.29□□□□□ -0.28
VPS4A-201ENST00000254950 STIM1Q13586 685 aa13.29□□□□□ -0.28
VPS4A-201ENST00000254950 NSUN7Q8NE18 718 aaKnown RBP13.29□□□□□ -0.28
VPS4A-201ENST00000254950 XPO5Q9HAV4 1204 aaKnown RBP eCLIP13.29□□□□□ -0.28
VPS4A-201ENST00000254950 ANO10Q9NW15 660 aa13.29□□□□□ -0.28
VPS4A-201ENST00000254950 WDR19Q8NEZ3 1342 aa13.29□□□□□ -0.28
VPS4A-201ENST00000254950 CLRN2A0PK11 232 aa13.29□□□□□ -0.28
VPS4A-201ENST00000254950 PKP1Q13835 747 aa13.29□□□□□ -0.28
VPS4A-201ENST00000254950 KDM3BQ7LBC6 1761 aa13.29□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms