RNA–Protein interactions for RNA: ENST00000231656.12

CDX1-201, Transcript of caudal type homeobox 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CDX1, Length 1,758 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1-201ENST00000231656 GPHNQ9NQX3 736 aaPredicted RBP26.54■■□□□ 1.84
CDX1-201ENST00000231656 FZD9O00144 591 aa26.53■■□□□ 1.84
CDX1-201ENST00000231656 CTDNEP1O95476 244 aa26.53■■□□□ 1.84
CDX1-201ENST00000231656 CTR9Q6PD62 1173 aa26.53■■□□□ 1.84
CDX1-201ENST00000231656 NSUN7Q8NE18 718 aaKnown RBP26.53■■□□□ 1.84
CDX1-201ENST00000231656 AGBL3Q8NEM8 1001 aa26.53■■□□□ 1.84
CDX1-201ENST00000231656 NAV1Q8NEY1 1877 aa26.53■■□□□ 1.84
CDX1-201ENST00000231656 CTDSPL2Q05D32 466 aa26.53■■□□□ 1.84
CDX1-201ENST00000231656 TNIP1Q15025 636 aa26.53■■□□□ 1.84
CDX1-201ENST00000231656 PCDHAC2Q9Y5I4 1007 aa26.53■■□□□ 1.84
CDX1-201ENST00000231656 ECM29Q5VYK3 1845 aa26.53■■□□□ 1.84
CDX1-201ENST00000231656 MINDY4BA8MYZ0 360 aa26.52■■□□□ 1.84
CDX1-201ENST00000231656 USP17L12C9JPN9 530 aa26.52■■□□□ 1.84
CDX1-201ENST00000231656 USP17L21D6R901 530 aa26.52■■□□□ 1.84
CDX1-201ENST00000231656 LMNB1P20700 586 aa26.52■■□□□ 1.84
CDX1-201ENST00000231656 RBM5P52756 815 aaKnown RBP eCLIP26.52■■□□□ 1.84
CDX1-201ENST00000231656 PPARAQ07869 468 aa26.52■■□□□ 1.84
CDX1-201ENST00000231656 GAS2L3Q86XJ1 694 aa26.52■■□□□ 1.84
CDX1-201ENST00000231656 LAMB1P07942 1786 aa26.52■■□□□ 1.84
CDX1-201ENST00000231656 CDC42EP5Q6NZY7 148 aa26.51■■□□□ 1.83
CDX1-201ENST00000231656 ANAPC4Q9UJX5 808 aa26.51■■□□□ 1.83
CDX1-201ENST00000231656 CYP2D7A0A087X1C5 515 aa26.51■■□□□ 1.83
CDX1-201ENST00000231656 GADD45BO75293 160 aaPredicted RBP26.51■■□□□ 1.83
CDX1-201ENST00000231656 ZNF445P59923 1031 aa26.51■■□□□ 1.83
CDX1-201ENST00000231656 TRDNQ13061 729 aa26.51■■□□□ 1.83
CDX1-201ENST00000231656 ZSCAN23Q3MJ62 389 aa26.51■■□□□ 1.83
CDX1-201ENST00000231656 MAPKAPK5Q8IW41 473 aa26.51■■□□□ 1.83
CDX1-201ENST00000231656 NKX2-3Q8TAU0 364 aa26.51■■□□□ 1.83
CDX1-201ENST00000231656 USP40Q9NVE5 1235 aa26.51■■□□□ 1.83
CDX1-201ENST00000231656 MCM9Q9NXL9 1143 aa26.51■■□□□ 1.83
CDX1-201ENST00000231656 ARPP21Q9UBL0 812 aaPredicted RBP26.51■■□□□ 1.83
CDX1-201ENST00000231656 EIF6P56537 245 aaKnown RBP26.5■■□□□ 1.83
CDX1-201ENST00000231656 CCT2P78371 535 aaKnown RBP26.5■■□□□ 1.83
CDX1-201ENST00000231656 SBK1Q52WX2 424 aa26.5■■□□□ 1.83
CDX1-201ENST00000231656 OGFOD1Q8N543 542 aa26.5■■□□□ 1.83
CDX1-201ENST00000231656 RBM27Q9P2N5 1060 aaKnown RBP26.5■■□□□ 1.83
CDX1-201ENST00000231656 HDAC9Q9UKV0 1011 aa26.5■■□□□ 1.83
CDX1-201ENST00000231656 BRPF3Q9ULD4 1205 aa26.5■■□□□ 1.83
CDX1-201ENST00000231656 SMIM22K7EJ46 135 aa26.49■■□□□ 1.83
CDX1-201ENST00000231656 USP17L8P0C7I0 530 aa26.49■■□□□ 1.83
CDX1-201ENST00000231656 DNM1Q05193 864 aaKnown RBP26.49■■□□□ 1.83
CDX1-201ENST00000231656 CFAP100Q494V2 611 aa26.49■■□□□ 1.83
CDX1-201ENST00000231656 AKNAD1Q5T1N1 836 aa26.49■■□□□ 1.83
CDX1-201ENST00000231656 CYB5R4Q7L1T6 521 aa26.49■■□□□ 1.83
CDX1-201ENST00000231656 CHMP4CQ96CF2 233 aa26.49■■□□□ 1.83
CDX1-201ENST00000231656 NCOA5Q9HCD5 579 aaKnown RBP26.49■■□□□ 1.83
CDX1-201ENST00000231656 TACC3Q9Y6A5 838 aa26.49■■□□□ 1.83
CDX1-201ENST00000231656 MYH1P12882 1939 aa26.49■■□□□ 1.83
CDX1-201ENST00000231656 DDX60LQ5H9U9 1706 aaKnown RBP26.49■■□□□ 1.83
CDX1-201ENST00000231656 FLT1P17948 1338 aa26.49■■□□□ 1.83
CDX1-201ENST00000231656 PTPDC1A2A3K4 754 aa26.48■■□□□ 1.83
CDX1-201ENST00000231656 XRCC6P12956 609 aaKnown RBP eCLIP26.48■■□□□ 1.83
CDX1-201ENST00000231656 HMGN5P82970 282 aaKnown RBP26.48■■□□□ 1.83
CDX1-201ENST00000231656 DDX11Q96FC9 970 aa26.48■■□□□ 1.83
CDX1-201ENST00000231656 TMEM63CQ9P1W3 806 aa26.48■■□□□ 1.83
CDX1-201ENST00000231656 NEDD4P46934 1319 aa26.48■■□□□ 1.83
CDX1-201ENST00000231656 WDHD1O75717 1129 aaPredicted RBP26.48■■□□□ 1.83
CDX1-201ENST00000231656 MRE11P49959 708 aa26.48■■□□□ 1.83
CDX1-201ENST00000231656 STAG1Q8WVM7 1258 aa26.48■■□□□ 1.83
CDX1-201ENST00000231656 INCENPQ9NQS7 918 aa26.48■■□□□ 1.83
CDX1-201ENST00000231656 EVX2Q03828 476 aa26.47■■□□□ 1.83
CDX1-201ENST00000231656 MFSD6Q6ZSS7 791 aa26.47■■□□□ 1.83
CDX1-201ENST00000231656 NAP1L2Q9ULW6 460 aaPredicted RBP26.47■■□□□ 1.83
CDX1-201ENST00000231656 HPS5Q9UPZ3 1129 aa26.47■■□□□ 1.83
CDX1-201ENST00000231656 KLF18A0A0U1RQI7 1052 aa26.46■■□□□ 1.83
CDX1-201ENST00000231656 CYP2D6P10635 497 aa26.46■■□□□ 1.83
CDX1-201ENST00000231656 C12orf60Q5U649 245 aa26.46■■□□□ 1.83
CDX1-201ENST00000231656 FERMT3Q86UX7 667 aa26.46■■□□□ 1.83
CDX1-201ENST00000231656 STK11IPQ8N1F8 1099 aa26.46■■□□□ 1.83
CDX1-201ENST00000231656 GRPEL1Q9HAV7 217 aa26.46■■□□□ 1.83
CDX1-201ENST00000231656 MYH15Q9Y2K3 1946 aa26.46■■□□□ 1.83
CDX1-201ENST00000231656 B4E1Z4 1266 aa26.46■■□□□ 1.83
CDX1-201ENST00000231656 SH2B2O14492 632 aaPredicted RBP26.46■■□□□ 1.83
CDX1-201ENST00000231656 RPS12P25398 132 aaKnown RBP26.46■■□□□ 1.83
CDX1-201ENST00000231656 FAM184AQ8NB25 1140 aa26.46■■□□□ 1.83
CDX1-201ENST00000231656 PRMT6Q96LA8 375 aaPredicted RBP26.46■■□□□ 1.83
CDX1-201ENST00000231656 RNF41Q9H4P4 317 aaPredicted RBP26.46■■□□□ 1.83
CDX1-201ENST00000231656 SAP30BPQ9UHR5 308 aaKnown RBP26.46■■□□□ 1.83
CDX1-201ENST00000231656 ZNF541Q9H0D2 1346 aa26.45■■□□□ 1.83
CDX1-201ENST00000231656 FIBPO43427 364 aa26.45■■□□□ 1.82
CDX1-201ENST00000231656 PICALMQ13492 652 aa26.45■■□□□ 1.82
CDX1-201ENST00000231656 SLC4A8Q2Y0W8 1093 aa26.45■■□□□ 1.82
CDX1-201ENST00000231656 CNNM2Q9H8M5 875 aa26.45■■□□□ 1.82
CDX1-201ENST00000231656 DDX4Q9NQI0 724 aaKnown RBP26.45■■□□□ 1.82
CDX1-201ENST00000231656 ANGEL1Q9UNK9 670 aaKnown RBP26.45■■□□□ 1.82
CDX1-201ENST00000231656 SPDYE2BA6NHP3 402 aa26.44■■□□□ 1.82
CDX1-201ENST00000231656 GOLGA8BA8MQT2 603 aa26.44■■□□□ 1.82
CDX1-201ENST00000231656 SPDYE6P0CI01 402 aa26.44■■□□□ 1.82
CDX1-201ENST00000231656 CSPP1Q1MSJ5 1256 aa26.44■■□□□ 1.82
CDX1-201ENST00000231656 AMOTL1Q8IY63 956 aa26.44■■□□□ 1.82
CDX1-201ENST00000231656 GJA3Q9Y6H8 435 aa26.44■■□□□ 1.82
CDX1-201ENST00000231656 RESTQ13127 1097 aa26.43■■□□□ 1.82
CDX1-201ENST00000231656 DLGAP5Q15398 846 aa26.43■■□□□ 1.82
CDX1-201ENST00000231656 TMEM87BQ96K49 555 aa26.43■■□□□ 1.82
CDX1-201ENST00000231656 KIF3AQ9Y496 699 aa26.43■■□□□ 1.82
CDX1-201ENST00000231656 POLR3DP05423 398 aaPredicted RBP26.43■■□□□ 1.82
CDX1-201ENST00000231656 UBE2HP62256 183 aa26.43■■□□□ 1.82
CDX1-201ENST00000231656 NFIAQ12857 509 aa26.43■■□□□ 1.82
CDX1-201ENST00000231656 MTMR14Q8NCE2 650 aa26.43■■□□□ 1.82
CDX1-201ENST00000231656 KRT23Q9C075 422 aa26.43■■□□□ 1.82
Retrieved 100 of 20,778 RNA–protein pairs in 40 ms