RNA–Protein interactions for RNA: ENST00000228251.8

YBX3-201, Transcript of Y-box binding protein 3, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene YBX3, Length 1,796 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-201ENST00000228251 MAP3K14Q99558 947 aa22.22■■□□□ 1.15
YBX3-201ENST00000228251 SLC26A6Q9BXS9 759 aa22.22■■□□□ 1.15
YBX3-201ENST00000228251 DCP1AQ9NPI6 582 aaPredicted RBP22.22■■□□□ 1.15
YBX3-201ENST00000228251 TOMM22Q9NS69 142 aa22.22■■□□□ 1.15
YBX3-201ENST00000228251 ERICH2A1L162 156 aa22.22■■□□□ 1.15
YBX3-201ENST00000228251 ORC4O43929 436 aa22.22■■□□□ 1.15
YBX3-201ENST00000228251 GUCY1A2P33402 732 aa22.22■■□□□ 1.15
YBX3-201ENST00000228251 SBK1Q52WX2 424 aa22.22■■□□□ 1.15
YBX3-201ENST00000228251 SLC27A3Q5K4L6 730 aa22.22■■□□□ 1.15
YBX3-201ENST00000228251 SASS6Q6UVJ0 657 aa22.22■■□□□ 1.15
YBX3-201ENST00000228251 FANCBQ8NB91 859 aa22.22■■□□□ 1.15
YBX3-201ENST00000228251 GNL3Q9BVP2 549 aaKnown RBP eCLIP22.22■■□□□ 1.15
YBX3-201ENST00000228251 ATP8A2Q9NTI2 1148 aa22.22■■□□□ 1.15
YBX3-201ENST00000228251 XDHP47989 1333 aa22.22■■□□□ 1.15
YBX3-201ENST00000228251 KINO60870 393 aaKnown RBP22.21■■□□□ 1.15
YBX3-201ENST00000228251 PPP2R5BQ15173 497 aa22.21■■□□□ 1.15
YBX3-201ENST00000228251 LUZP1Q86V48 1076 aa22.21■■□□□ 1.15
YBX3-201ENST00000228251 WASF1Q92558 559 aa22.21■■□□□ 1.15
YBX3-201ENST00000228251 UBAC1Q9BSL1 405 aa22.21■■□□□ 1.15
YBX3-201ENST00000228251 NAV1Q8NEY1 1877 aa22.21■■□□□ 1.15
YBX3-201ENST00000228251 CCDC196A0A1B0GTZ2 297 aa22.2■■□□□ 1.14
YBX3-201ENST00000228251 USP17L12C9JPN9 530 aa22.2■■□□□ 1.14
YBX3-201ENST00000228251 USP17L21D6R901 530 aa22.2■■□□□ 1.14
YBX3-201ENST00000228251 NDUFA8P51970 172 aa22.2■■□□□ 1.14
YBX3-201ENST00000228251 FUT2Q10981 343 aa22.2■■□□□ 1.14
YBX3-201ENST00000228251 CHAF1AQ13111 956 aaPredicted RBP22.2■■□□□ 1.14
YBX3-201ENST00000228251 STK11IPQ8N1F8 1099 aa22.2■■□□□ 1.14
YBX3-201ENST00000228251 ZSCAN10Q96SZ4 725 aaPredicted RBP22.2■■□□□ 1.14
YBX3-201ENST00000228251 CRNKL1Q9BZJ0 848 aaKnown RBP22.2■■□□□ 1.14
YBX3-201ENST00000228251 AATFQ9NY61 560 aaKnown RBP eCLIP22.2■■□□□ 1.14
YBX3-201ENST00000228251 MKRN1Q9UHC7 482 aaKnown RBP22.2■■□□□ 1.14
YBX3-201ENST00000228251 ANKRD31Q8N7Z5 1873 aa22.2■■□□□ 1.14
YBX3-201ENST00000228251 DDX60LQ5H9U9 1706 aaKnown RBP22.2■■□□□ 1.14
YBX3-201ENST00000228251 FAM237AA0A1B0GTK4 181 aa22.2■■□□□ 1.14
YBX3-201ENST00000228251 PPP6R2O75170 966 aa22.2■■□□□ 1.14
YBX3-201ENST00000228251 WDHD1O75717 1129 aaPredicted RBP22.2■■□□□ 1.14
YBX3-201ENST00000228251 EVX2Q03828 476 aa22.2■■□□□ 1.14
YBX3-201ENST00000228251 IQCB1Q15051 598 aa22.2■■□□□ 1.14
YBX3-201ENST00000228251 DNAJC25Q9H1X3 360 aa22.2■■□□□ 1.14
YBX3-201ENST00000228251 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP22.2■■□□□ 1.14
YBX3-201ENST00000228251 NRXN2Q9P2S2 1712 aa22.19■■□□□ 1.14
YBX3-201ENST00000228251 DEXIO95424 95 aa22.19■■□□□ 1.14
YBX3-201ENST00000228251 MMP1P03956 469 aa22.19■■□□□ 1.14
YBX3-201ENST00000228251 CMA1P23946 247 aa22.19■■□□□ 1.14
YBX3-201ENST00000228251 SPTY2D1Q68D10 685 aaPredicted RBP22.19■■□□□ 1.14
YBX3-201ENST00000228251 MROH7-TTC4A0A0A0MT08 1334 aa22.19■■□□□ 1.14
YBX3-201ENST00000228251 A0A1B0GVL5 298 aa22.18■■□□□ 1.14
YBX3-201ENST00000228251 ZNF165P49910 485 aa22.18■■□□□ 1.14
YBX3-201ENST00000228251 SF3A1Q15459 793 aaKnown RBP22.18■■□□□ 1.14
YBX3-201ENST00000228251 WDR66Q8TBY9 1149 aa22.18■■□□□ 1.14
YBX3-201ENST00000228251 EIF4ENIF1Q9NRA8 985 aaKnown RBP22.18■■□□□ 1.14
YBX3-201ENST00000228251 TROAPQ12815 778 aa22.17■■□□□ 1.14
YBX3-201ENST00000228251 TRIM29Q14134 588 aa22.17■■□□□ 1.14
YBX3-201ENST00000228251 TRIM22Q8IYM9 498 aa22.17■■□□□ 1.14
YBX3-201ENST00000228251 RNF26Q9BY78 433 aaPredicted RBP22.17■■□□□ 1.14
YBX3-201ENST00000228251 QTRT2Q9H974 415 aaKnown RBP22.17■■□□□ 1.14
YBX3-201ENST00000228251 SERPINB2P05120 415 aa22.17■■□□□ 1.14
YBX3-201ENST00000228251 STX1AQ16623 288 aa22.17■■□□□ 1.14
YBX3-201ENST00000228251 C11orf57Q6ZUT1 292 aaPredicted RBP22.17■■□□□ 1.14
YBX3-201ENST00000228251 SHISA4Q96DD7 197 aa22.17■■□□□ 1.14
YBX3-201ENST00000228251 ANKIB1Q9P2G1 1089 aa22.17■■□□□ 1.14
YBX3-201ENST00000228251 ARPP21Q9UBL0 812 aaPredicted RBP22.17■■□□□ 1.14
YBX3-201ENST00000228251 HPSEQ9Y251 543 aa22.17■■□□□ 1.14
YBX3-201ENST00000228251 KLRG2A4D1S0 409 aaPredicted RBP22.16■■□□□ 1.14
YBX3-201ENST00000228251 NPHP1O15259 732 aa22.16■■□□□ 1.14
YBX3-201ENST00000228251 HOXA10P31260 410 aaPredicted RBP22.16■■□□□ 1.14
YBX3-201ENST00000228251 NOSTRINQ8IVI9 506 aa22.16■■□□□ 1.14
YBX3-201ENST00000228251 ROBO3Q96MS0 1386 aa22.15■■□□□ 1.14
YBX3-201ENST00000228251 OFD1O75665 1012 aa22.15■■□□□ 1.14
YBX3-201ENST00000228251 PTMAP06454 111 aaKnown RBP22.15■■□□□ 1.14
YBX3-201ENST00000228251 TOB1P50616 345 aaPredicted RBP22.15■■□□□ 1.14
YBX3-201ENST00000228251 GPSM2P81274 684 aa22.15■■□□□ 1.14
YBX3-201ENST00000228251 DDR1Q08345 913 aa22.15■■□□□ 1.14
YBX3-201ENST00000228251 FOXP1Q9H334 677 aaPredicted RBP22.15■■□□□ 1.14
YBX3-201ENST00000228251 PRDM1O75626 825 aa22.15■■□□□ 1.14
YBX3-201ENST00000228251 CYP2D6P10635 497 aa22.15■■□□□ 1.14
YBX3-201ENST00000228251 PPP4CP60510 307 aa22.15■■□□□ 1.14
YBX3-201ENST00000228251 GRIK5Q16478 980 aa22.15■■□□□ 1.14
YBX3-201ENST00000228251 PKN1Q16512 942 aa22.15■■□□□ 1.14
YBX3-201ENST00000228251 PLA2G4DQ86XP0 818 aa22.15■■□□□ 1.14
YBX3-201ENST00000228251 CMTR1Q8N1G2 835 aaKnown RBP22.15■■□□□ 1.14
YBX3-201ENST00000228251 JAG2Q9Y219 1238 aa22.15■■□□□ 1.14
YBX3-201ENST00000228251 FOCADQ5VW36 1801 aa22.14■■□□□ 1.13
YBX3-201ENST00000228251 BTBD18B2RXH4 712 aa22.14■■□□□ 1.13
YBX3-201ENST00000228251 DDAH1O94760 285 aa22.14■■□□□ 1.13
YBX3-201ENST00000228251 PFKFB1P16118 471 aa22.14■■□□□ 1.13
YBX3-201ENST00000228251 IFIT1BQ5T764 474 aaKnown RBP22.14■■□□□ 1.13
YBX3-201ENST00000228251 SHC4Q6S5L8 630 aa22.14■■□□□ 1.13
YBX3-201ENST00000228251 ZNF804AQ7Z570 1209 aa22.14■■□□□ 1.13
YBX3-201ENST00000228251 IQCA1Q86XH1 822 aa22.14■■□□□ 1.13
YBX3-201ENST00000228251 DZIP1Q86YF9 867 aaKnown RBP22.14■■□□□ 1.13
YBX3-201ENST00000228251 DIS3L2Q8IYB7 885 aaKnown RBP22.14■■□□□ 1.13
YBX3-201ENST00000228251 PROM2Q8N271 834 aa22.14■■□□□ 1.13
YBX3-201ENST00000228251 NUP133Q8WUM0 1156 aa22.14■■□□□ 1.13
YBX3-201ENST00000228251 POLRMTO00411 1230 aaKnown RBP22.13■■□□□ 1.13
YBX3-201ENST00000228251 LDHBP07195 334 aaKnown RBP22.13■■□□□ 1.13
YBX3-201ENST00000228251 ST5P78524 1137 aa22.13■■□□□ 1.13
YBX3-201ENST00000228251 KRT27Q7Z3Y8 459 aa22.13■■□□□ 1.13
YBX3-201ENST00000228251 RPGRQ92834 1020 aaKnown RBP22.13■■□□□ 1.13
YBX3-201ENST00000228251 TIGD1Q96MW7 591 aa22.13■■□□□ 1.13
Retrieved 100 of 20,778 RNA–protein pairs in 39.1 ms