RNA–Protein interactions for RNA: ENST00000637439.1

CIITA-215, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 5

Gene CIITA, Length 850 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-215ENST00000637439 KRTAP5-3Q6L8H2 238 aa6.06□□□□□ -1.44
CIITA-215ENST00000637439 A0A1B0GU69 56 aa5.97□□□□□ -1.45
CIITA-215ENST00000637439 A8MU10 97 aa5.97□□□□□ -1.45
CIITA-215ENST00000637439 KRTAP20-2Q3LI61 65 aa5.96□□□□□ -1.46
CIITA-215ENST00000637439 KRTAP4-7Q9BYR0 210 aa5.95□□□□□ -1.46
CIITA-215ENST00000637439 SPRR5A0A1B0GTR4 108 aa5.93□□□□□ -1.46
CIITA-215ENST00000637439 KRTAP12-3P60328 96 aa5.92□□□□□ -1.46
CIITA-215ENST00000637439 KRTAP5-5Q701N2 237 aaPredicted RBP5.88□□□□□ -1.47
CIITA-215ENST00000637439 ANAPC13Q9BS18 74 aa5.87□□□□□ -1.47
CIITA-215ENST00000637439 H7BZZ5 65 aa5.86□□□□□ -1.47
CIITA-215ENST00000637439 COX7CP15954 63 aa5.86□□□□□ -1.47
CIITA-215ENST00000637439 KRTAP12-4P60329 112 aa5.86□□□□□ -1.47
CIITA-215ENST00000637439 PCP4P48539 62 aa5.85□□□□□ -1.47
CIITA-215ENST00000637439 CCDC179H3BU77 68 aa5.78□□□□□ -1.48
CIITA-215ENST00000637439 PRR15LQ9BU68 103 aa5.72□□□□□ -1.49
CIITA-215ENST00000637439 SYNE1Q8NF91 8797 aaKnown RBP5.68□□□□□ -1.5
CIITA-215ENST00000637439 LOC100996750A0A140TA64 210 aa5.66□□□□□ -1.5
CIITA-215ENST00000637439 KRTAP19-4Q3LI73 84 aa5.64□□□□□ -1.51
CIITA-215ENST00000637439 KRTAP25-1Q3LHN0 102 aa5.58□□□□□ -1.52
CIITA-215ENST00000637439 TMEM258P61165 79 aa5.57□□□□□ -1.52
CIITA-215ENST00000637439 KRTAP4-11Q9BYQ6 195 aa5.54□□□□□ -1.52
CIITA-215ENST00000637439 LINC01558Q9Y6Z2 57 aa5.53□□□□□ -1.52
CIITA-215ENST00000637439 UQCR11O14957 56 aa5.5□□□□□ -1.53
CIITA-215ENST00000637439 ATP5EP56381 51 aaPredicted RBP5.5□□□□□ -1.53
CIITA-215ENST00000637439 KRTAP5-2Q701N4 177 aa5.45□□□□□ -1.54
CIITA-215ENST00000637439 KRTAP15-1Q3LI76 137 aa5.42□□□□□ -1.54
CIITA-215ENST00000637439 LCE3CQ5T5A8 94 aa5.41□□□□□ -1.54
CIITA-215ENST00000637439 MT1AP04731 61 aa5.38□□□□□ -1.55
CIITA-215ENST00000637439 AHNAKQ09666 5890 aaKnown RBP5.37□□□□□ -1.55
CIITA-215ENST00000637439 KRTAP23-1A1A580 65 aa5.36□□□□□ -1.55
CIITA-215ENST00000637439 K7ERS5 55 aa5.35□□□□□ -1.55
CIITA-215ENST00000637439 KRTAP6-1Q3LI64 71 aa5.35□□□□□ -1.55
CIITA-215ENST00000637439 MUC5ACP98088 5654 aa5.34□□□□□ -1.55
CIITA-215ENST00000637439 KRTAP5-8O75690 187 aa5.34□□□□□ -1.55
CIITA-215ENST00000637439 RPS28P62857 69 aaKnown RBP5.34□□□□□ -1.55
CIITA-215ENST00000637439 MUC5BQ9HC84 5762 aaPredicted RBP5.33□□□□□ -1.56
CIITA-215ENST00000637439 MIR22HGQ0VDD5 57 aa5.32□□□□□ -1.56
CIITA-215ENST00000637439 OBSCNQ5VST9 7968 aa5.25□□□□□ -1.57
CIITA-215ENST00000637439 KRTAP9-4Q9BYQ2 154 aa5.24□□□□□ -1.57
CIITA-215ENST00000637439 KRTAP6-2Q3LI66 62 aa5.19□□□□□ -1.58
CIITA-215ENST00000637439 KRTAP9-9Q9BYP9 154 aa5.17□□□□□ -1.58
CIITA-215ENST00000637439 Q1T7F1 81 aa5.14□□□□□ -1.59
CIITA-215ENST00000637439 V9GYY9 64 aa5.1□□□□□ -1.59
CIITA-215ENST00000637439 KRTAP9-6A8MVA2 160 aa5.07□□□□□ -1.6
CIITA-215ENST00000637439 PSPHP1O15172 72 aa5.02□□□□□ -1.61
CIITA-215ENST00000637439 CDC42SE1Q9NRR8 79 aa4.98□□□□□ -1.61
CIITA-215ENST00000637439 MT3P25713 68 aa4.96□□□□□ -1.62
CIITA-215ENST00000637439 KRTAP5-1Q6L8H4 278 aa4.94□□□□□ -1.62
CIITA-215ENST00000637439 ROMO1P60602 79 aa4.87□□□□□ -1.63
CIITA-215ENST00000637439 A6NED7 52 aa4.86□□□□□ -1.63
CIITA-215ENST00000637439 BRK1Q8WUW1 75 aa4.78□□□□□ -1.64
CIITA-215ENST00000637439 PRO0628Q9UI54 55 aa4.69□□□□□ -1.66
CIITA-215ENST00000637439 LCE1EQ5T753 118 aa4.65□□□□□ -1.67
CIITA-215ENST00000637439 PMAIP1Q13794 54 aa4.5□□□□□ -1.69
CIITA-215ENST00000637439 KRTAP4-2Q9BYR5 136 aa4.38□□□□□ -1.71
CIITA-215ENST00000637439 LCE1BQ5T7P3 118 aa4.37□□□□□ -1.71
CIITA-215ENST00000637439 KTN1-AS1Q86SY8 53 aa4.36□□□□□ -1.71
CIITA-215ENST00000637439 LCE1CQ5T751 118 aa4.31□□□□□ -1.72
CIITA-215ENST00000637439 PRAC1Q96KF2 57 aa4.27□□□□□ -1.73
CIITA-215ENST00000637439 SVIPQ8NHG7 77 aa4.21□□□□□ -1.74
CIITA-215ENST00000637439 KRTAP4-12Q9BQ66 201 aa4.08□□□□□ -1.76
CIITA-215ENST00000637439 LCE1FQ5T754 118 aa3.93□□□□□ -1.78
CIITA-215ENST00000637439 KRTAP5-11Q6L8G4 156 aa3.93□□□□□ -1.78
CIITA-215ENST00000637439 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.87□□□□□ -1.79
CIITA-215ENST00000637439 LCE3DQ9BYE3 92 aa3.84□□□□□ -1.79
CIITA-215ENST00000637439 PHGR1C9JFL3 82 aa3.68□□□□□ -1.82
CIITA-215ENST00000637439 LCE3EQ5T5B0 92 aa3.55□□□□□ -1.84
CIITA-215ENST00000637439 KRTAP21-2Q3LI59 83 aa3.53□□□□□ -1.84
CIITA-215ENST00000637439 LUZP6Q538Z0 58 aa3.41□□□□□ -1.86
CIITA-215ENST00000637439 NDUFAF8A1L188 74 aa3.34□□□□□ -1.87
CIITA-215ENST00000637439 KRTAP4-4Q9BYR3 166 aa3.27□□□□□ -1.89
CIITA-215ENST00000637439 MUC19Q7Z5P9 8384 aa3.24□□□□□ -1.89
CIITA-215ENST00000637439 A0A0A0MQY5 61 aa2.89□□□□□ -1.95
CIITA-215ENST00000637439 H3BS24 57 aa2.84□□□□□ -1.95
CIITA-215ENST00000637439 KRTAP21-1Q3LI58 79 aa2.82□□□□□ -1.96
CIITA-215ENST00000637439 INE1O15225 51 aa2.76□□□□□ -1.97
CIITA-215ENST00000637439 PRM1P04553 51 aa2.44□□□□□ -2.02
CIITA-215ENST00000637439 MUC16Q8WXI7 14507 aa2.33□□□□□ -2.04
Retrieved 78 of 20,778 RNA–protein pairs in 81.7 ms