RNA–Protein interactions for RNA: ENST00000637050.1

CLN3-254, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,684 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-254ENST00000637050 MT1EP04732 61 aa6.72□□□□□ -1.33
CLN3-254ENST00000637050 INE1O15225 51 aa6.71□□□□□ -1.34
CLN3-254ENST00000637050 SPRR2FQ96RM1 72 aa6.65□□□□□ -1.35
CLN3-254ENST00000637050 KRTAP5-9P26371 169 aa6.64□□□□□ -1.35
CLN3-254ENST00000637050 MT1LQ93083 61 aa6.57□□□□□ -1.36
CLN3-254ENST00000637050 KRTAP6-3Q3LI67 103 aa6.55□□□□□ -1.36
CLN3-254ENST00000637050 SYNE2Q8WXH0 6885 aaKnown RBP6.53□□□□□ -1.36
CLN3-254ENST00000637050 KRTAP19-4Q3LI73 84 aa6.49□□□□□ -1.37
CLN3-254ENST00000637050 KRTAP19-3Q7Z4W3 81 aa6.48□□□□□ -1.37
CLN3-254ENST00000637050 MUC12Q9UKN1 5478 aa6.45□□□□□ -1.38
CLN3-254ENST00000637050 LCE3CQ5T5A8 94 aa6.43□□□□□ -1.38
CLN3-254ENST00000637050 MT1GP13640 62 aa6.42□□□□□ -1.38
CLN3-254ENST00000637050 LCE1AQ5T7P2 110 aa6.39□□□□□ -1.39
CLN3-254ENST00000637050 LCE5AQ5TCM9 118 aa6.39□□□□□ -1.39
CLN3-254ENST00000637050 KRTAP9-7A8MTY7 169 aa6.38□□□□□ -1.39
CLN3-254ENST00000637050 LCE3BQ5TA77 95 aa6.36□□□□□ -1.39
CLN3-254ENST00000637050 KRTAP4-7Q9BYR0 210 aa6.34□□□□□ -1.39
CLN3-254ENST00000637050 SPRR2EP22531 72 aa6.33□□□□□ -1.4
CLN3-254ENST00000637050 SPRR2BP35325 72 aa6.33□□□□□ -1.4
CLN3-254ENST00000637050 SPRR2AP35326 72 aa6.33□□□□□ -1.4
CLN3-254ENST00000637050 MT1MQ8N339 61 aa6.33□□□□□ -1.4
CLN3-254ENST00000637050 KRTAP9-9Q9BYP9 154 aa6.23□□□□□ -1.41
CLN3-254ENST00000637050 KRTAP9-4Q9BYQ2 154 aa6.23□□□□□ -1.41
CLN3-254ENST00000637050 MDN1Q9NU22 5596 aa6.23□□□□□ -1.41
CLN3-254ENST00000637050 KRTAP4-3Q9BYR4 195 aa6.2□□□□□ -1.42
CLN3-254ENST00000637050 KRTAP4-12Q9BQ66 201 aa6.14□□□□□ -1.43
CLN3-254ENST00000637050 SPRR2DP22532 72 aa6.1□□□□□ -1.43
CLN3-254ENST00000637050 KRTAP9-6A8MVA2 160 aa6.09□□□□□ -1.43
CLN3-254ENST00000637050 NEBP20929 6669 aa5.98□□□□□ -1.45
CLN3-254ENST00000637050 LCE1DQ5T752 114 aa5.93□□□□□ -1.46
CLN3-254ENST00000637050 DSTQ03001 7570 aaKnown RBP5.88□□□□□ -1.47
CLN3-254ENST00000637050 KRTAP4-2Q9BYR5 136 aa5.85□□□□□ -1.47
CLN3-254ENST00000637050 KRTAP4-9Q9BYQ8 210 aa5.83□□□□□ -1.48
CLN3-254ENST00000637050 KRTAP2-3P0C7H8 128 aa5.74□□□□□ -1.49
CLN3-254ENST00000637050 KRTAP5-5Q701N2 237 aaPredicted RBP5.74□□□□□ -1.49
CLN3-254ENST00000637050 KRTAP2-4Q9BYR9 128 aa5.74□□□□□ -1.49
CLN3-254ENST00000637050 KRTAP5-3Q6L8H2 238 aa5.67□□□□□ -1.5
CLN3-254ENST00000637050 KRTAP20-1Q3LI63 56 aa5.66□□□□□ -1.5
CLN3-254ENST00000637050 KRTAP2-2Q9BYT5 123 aa5.62□□□□□ -1.51
CLN3-254ENST00000637050 KRTAP2-1Q9BYU5 128 aa5.62□□□□□ -1.51
CLN3-254ENST00000637050 MT1AP04731 61 aa5.59□□□□□ -1.52
CLN3-254ENST00000637050 KRTAP6-1Q3LI64 71 aa5.53□□□□□ -1.52
CLN3-254ENST00000637050 KRTAP5-4Q6L8H1 288 aa5.53□□□□□ -1.52
CLN3-254ENST00000637050 KRTAP4-11Q9BYQ6 195 aa5.52□□□□□ -1.53
CLN3-254ENST00000637050 LCE4AQ5TA78 99 aa5.43□□□□□ -1.54
CLN3-254ENST00000637050 KRTAP12-4P60329 112 aa5.33□□□□□ -1.56
CLN3-254ENST00000637050 SYNE1Q8NF91 8797 aaKnown RBP5.3□□□□□ -1.56
CLN3-254ENST00000637050 MT4P47944 62 aa5.28□□□□□ -1.56
CLN3-254ENST00000637050 KRTAP20-2Q3LI61 65 aa5.16□□□□□ -1.58
CLN3-254ENST00000637050 KRTAP6-2Q3LI66 62 aa5.11□□□□□ -1.59
CLN3-254ENST00000637050 HMCN1Q96RW7 5635 aa5.07□□□□□ -1.6
CLN3-254ENST00000637050 MT3P25713 68 aa5.06□□□□□ -1.6
CLN3-254ENST00000637050 GPR98Q8WXG9 6306 aa5.02□□□□□ -1.61
CLN3-254ENST00000637050 KRTAP5-2Q701N4 177 aa5□□□□□ -1.61
CLN3-254ENST00000637050 LCE3DQ9BYE3 92 aa4.8□□□□□ -1.64
CLN3-254ENST00000637050 LCE3EQ5T5B0 92 aa4.66□□□□□ -1.66
CLN3-254ENST00000637050 OBSCNQ5VST9 7968 aa4.53□□□□□ -1.68
CLN3-254ENST00000637050 AHNAK2Q8IVF2 5795 aa4.51□□□□□ -1.69
CLN3-254ENST00000637050 LCE1EQ5T753 118 aa4.44□□□□□ -1.7
CLN3-254ENST00000637050 KRTAP5-10Q6L8G5 202 aa4.41□□□□□ -1.7
CLN3-254ENST00000637050 KRTAP5-8O75690 187 aa4.34□□□□□ -1.71
CLN3-254ENST00000637050 KRTAP5-1Q6L8H4 278 aa4.33□□□□□ -1.72
CLN3-254ENST00000637050 PRM1P04553 51 aa4.29□□□□□ -1.72
CLN3-254ENST00000637050 KRTAP5-7Q6L8G8 165 aa4.2□□□□□ -1.74
CLN3-254ENST00000637050 LCE1CQ5T751 118 aa4.13□□□□□ -1.75
CLN3-254ENST00000637050 LCE1BQ5T7P3 118 aa4.13□□□□□ -1.75
CLN3-254ENST00000637050 KRTAP5-6Q6L8G9 129 aaPredicted RBP4.1□□□□□ -1.75
CLN3-254ENST00000637050 MUC5ACP98088 5654 aa4.02□□□□□ -1.77
CLN3-254ENST00000637050 AHNAKQ09666 5890 aaKnown RBP3.81□□□□□ -1.8
CLN3-254ENST00000637050 KRTAP5-11Q6L8G4 156 aa3.69□□□□□ -1.82
CLN3-254ENST00000637050 MUC5BQ9HC84 5762 aaPredicted RBP3.67□□□□□ -1.82
CLN3-254ENST00000637050 KRTAP21-2Q3LI59 83 aa3.64□□□□□ -1.83
CLN3-254ENST00000637050 KRTAP4-4Q9BYR3 166 aa3.4□□□□□ -1.86
CLN3-254ENST00000637050 LCE1FQ5T754 118 aa3.33□□□□□ -1.88
CLN3-254ENST00000637050 PHGR1C9JFL3 82 aa3.14□□□□□ -1.91
CLN3-254ENST00000637050 KRTAP21-1Q3LI58 79 aa2.86□□□□□ -1.95
CLN3-254ENST00000637050 MUC19Q7Z5P9 8384 aa2.7□□□□□ -1.98
CLN3-254ENST00000637050 MUC16Q8WXI7 14507 aa2.01□□□□□ -2.09
Retrieved 78 of 20,778 RNA–protein pairs in 117.4 ms