RNA–Protein interactions for RNA: ENST00000636306.1

CHD2-223, Transcript of chromodomain helicase DNA binding protein 2, human

TSL 5

Gene CHD2, Length 1,755 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CHD2-223	ENST00000636306	KRTAP10-5	P60370	271 aa		4.15	□□□□□ -1.74
CHD2-223	ENST00000636306	MT1X	P80297	61 aa		4.15	□□□□□ -1.74
CHD2-223	ENST00000636306	KRTAP12-3	P60328	96 aa		4.13	□□□□□ -1.75
CHD2-223	ENST00000636306	KRTAP4-11	Q9BYQ6	195 aa		4.11	□□□□□ -1.75
CHD2-223	ENST00000636306	LCE5A	Q5TCM9	118 aa		4.07	□□□□□ -1.76
CHD2-223	ENST00000636306	SSPO	A2VEC9	5147 aa		3.99	□□□□□ -1.77
CHD2-223	ENST00000636306	KRTAP10-7	P60409	375 aa	Predicted RBP	3.98	□□□□□ -1.77
CHD2-223	ENST00000636306	KRTAP2-3	P0C7H8	128 aa		3.95	□□□□□ -1.78
CHD2-223	ENST00000636306	KRTAP2-4	Q9BYR9	128 aa		3.95	□□□□□ -1.78
CHD2-223	ENST00000636306	KRTAP2-1	Q9BYU5	128 aa		3.95	□□□□□ -1.78
CHD2-223	ENST00000636306	LCE3C	Q5T5A8	94 aa		3.94	□□□□□ -1.78
CHD2-223	ENST00000636306	SYNE2	Q8WXH0	6885 aa	Known RBP	3.9	□□□□□ -1.79
CHD2-223	ENST00000636306	MACF1	Q9UPN3	7388 aa	Known RBP	3.87	□□□□□ -1.79
CHD2-223	ENST00000636306	KRTAP20-1	Q3LI63	56 aa		3.86	□□□□□ -1.79
CHD2-223	ENST00000636306	FCGBP	Q9Y6R7	5405 aa	Predicted RBP	3.85	□□□□□ -1.79
CHD2-223	ENST00000636306	USH2A	O75445	5202 aa		3.83	□□□□□ -1.8
CHD2-223	ENST00000636306	KRTAP19-5	Q3LI72	72 aa		3.82	□□□□□ -1.8
CHD2-223	ENST00000636306	KRTAP19-6	Q3LI70	58 aa		3.81	□□□□□ -1.8
CHD2-223	ENST00000636306	KRTAP6-3	Q3LI67	103 aa		3.81	□□□□□ -1.8
CHD2-223	ENST00000636306	NEB	P20929	6669 aa		3.76	□□□□□ -1.81
CHD2-223	ENST00000636306	KRTAP9-6	A8MVA2	160 aa		3.75	□□□□□ -1.81
CHD2-223	ENST00000636306	KRTAP19-7	Q3SYF9	63 aa		3.69	□□□□□ -1.82
CHD2-223	ENST00000636306	KRTAP5-3	Q6L8H2	238 aa		3.67	□□□□□ -1.82
CHD2-223	ENST00000636306	MT1E	P04732	61 aa		3.64	□□□□□ -1.83
CHD2-223	ENST00000636306	MUC12	Q9UKN1	5478 aa		3.61	□□□□□ -1.83
CHD2-223	ENST00000636306	MT1L	Q93083	61 aa		3.61	□□□□□ -1.83
CHD2-223	ENST00000636306	KRTAP12-4	P60329	112 aa		3.53	□□□□□ -1.84
CHD2-223	ENST00000636306	GPR98	Q8WXG9	6306 aa		3.52	□□□□□ -1.85
CHD2-223	ENST00000636306	KMT2D	O14686	5537 aa		3.5	□□□□□ -1.85
CHD2-223	ENST00000636306	MT1G	P13640	62 aa		3.48	□□□□□ -1.85
CHD2-223	ENST00000636306	KRTAP19-3	Q7Z4W3	81 aa		3.48	□□□□□ -1.85
CHD2-223	ENST00000636306	MT1M	Q8N339	61 aa		3.42	□□□□□ -1.86
CHD2-223	ENST00000636306	KRTAP2-2	Q9BYT5	123 aa		3.42	□□□□□ -1.86
CHD2-223	ENST00000636306	SPRR2F	Q96RM1	72 aa		3.41	□□□□□ -1.86
CHD2-223	ENST00000636306	MDN1	Q9NU22	5596 aa		3.38	□□□□□ -1.87
CHD2-223	ENST00000636306	KRTAP5-9	P26371	169 aa		3.33	□□□□□ -1.88
CHD2-223	ENST00000636306	KRTAP4-3	Q9BYR4	195 aa		3.28	□□□□□ -1.88
CHD2-223	ENST00000636306	MT1A	P04731	61 aa		3.25	□□□□□ -1.89
CHD2-223	ENST00000636306	SPRR2E	P22531	72 aa		3.22	□□□□□ -1.89
CHD2-223	ENST00000636306	SPRR2B	P35325	72 aa		3.22	□□□□□ -1.89
CHD2-223	ENST00000636306	SPRR2A	P35326	72 aa		3.22	□□□□□ -1.89
CHD2-223	ENST00000636306	LCE1A	Q5T7P2	110 aa		3.2	□□□□□ -1.9
CHD2-223	ENST00000636306	PRM1	P04553	51 aa		3.19	□□□□□ -1.9
CHD2-223	ENST00000636306	LCE3E	Q5T5B0	92 aa		3.15	□□□□□ -1.91
CHD2-223	ENST00000636306	KRTAP5-5	Q701N2	237 aa	Predicted RBP	3.15	□□□□□ -1.91
CHD2-223	ENST00000636306	SPRR2D	P22532	72 aa		3.13	□□□□□ -1.91
CHD2-223	ENST00000636306	LCE3D	Q9BYE3	92 aa		3.11	□□□□□ -1.91
CHD2-223	ENST00000636306	AHNAK2	Q8IVF2	5795 aa		3.01	□□□□□ -1.93
CHD2-223	ENST00000636306	KRTAP6-1	Q3LI64	71 aa		3.01	□□□□□ -1.93
CHD2-223	ENST00000636306	KRTAP5-10	Q6L8G5	202 aa		3.01	□□□□□ -1.93
CHD2-223	ENST00000636306	KRTAP5-7	Q6L8G8	165 aa		3	□□□□□ -1.93
CHD2-223	ENST00000636306	DST	Q03001	7570 aa	Known RBP	3	□□□□□ -1.93
CHD2-223	ENST00000636306	KRTAP6-2	Q3LI66	62 aa		2.93	□□□□□ -1.94
CHD2-223	ENST00000636306	HMCN1	Q96RW7	5635 aa		2.91	□□□□□ -1.94
CHD2-223	ENST00000636306	SYNE1	Q8NF91	8797 aa	Known RBP	2.9	□□□□□ -1.95
CHD2-223	ENST00000636306	LCE1E	Q5T753	118 aa		2.84	□□□□□ -1.95
CHD2-223	ENST00000636306	MT3	P25713	68 aa		2.81	□□□□□ -1.96
CHD2-223	ENST00000636306	KRTAP5-4	Q6L8H1	288 aa		2.8	□□□□□ -1.96
CHD2-223	ENST00000636306	KRTAP5-6	Q6L8G9	129 aa	Predicted RBP	2.79	□□□□□ -1.96
CHD2-223	ENST00000636306	MT4	P47944	62 aa		2.77	□□□□□ -1.97
CHD2-223	ENST00000636306	KRTAP5-11	Q6L8G4	156 aa		2.75	□□□□□ -1.97
CHD2-223	ENST00000636306	AHNAK	Q09666	5890 aa	Known RBP	2.7	□□□□□ -1.98
CHD2-223	ENST00000636306	KRTAP20-2	Q3LI61	65 aa		2.61	□□□□□ -1.99
CHD2-223	ENST00000636306	MUC5B	Q9HC84	5762 aa	Predicted RBP	2.61	□□□□□ -1.99
CHD2-223	ENST00000636306	KRTAP5-2	Q701N4	177 aa		2.59	□□□□□ -2
CHD2-223	ENST00000636306	MUC5AC	P98088	5654 aa		2.58	□□□□□ -2
CHD2-223	ENST00000636306	LCE1F	Q5T754	118 aa		2.44	□□□□□ -2.02
CHD2-223	ENST00000636306	OBSCN	Q5VST9	7968 aa		2.4	□□□□□ -2.03
CHD2-223	ENST00000636306	KRTAP5-1	Q6L8H4	278 aa		2.39	□□□□□ -2.03
CHD2-223	ENST00000636306	KRTAP5-8	O75690	187 aa		2.37	□□□□□ -2.03
CHD2-223	ENST00000636306	KRTAP4-4	Q9BYR3	166 aa		2.3	□□□□□ -2.04
CHD2-223	ENST00000636306	LCE1C	Q5T751	118 aa		2.21	□□□□□ -2.06
CHD2-223	ENST00000636306	LCE1B	Q5T7P3	118 aa		2.21	□□□□□ -2.06
CHD2-223	ENST00000636306	KRTAP21-1	Q3LI58	79 aa		2.14	□□□□□ -2.07
CHD2-223	ENST00000636306	KRTAP21-2	Q3LI59	83 aa		1.95	□□□□□ -2.1
CHD2-223	ENST00000636306	PHGR1	C9JFL3	82 aa		1.82	□□□□□ -2.12
CHD2-223	ENST00000636306	MUC19	Q7Z5P9	8384 aa		1.58	□□□□□ -2.16
CHD2-223	ENST00000636306	MUC16	Q8WXI7	14507 aa		1.1	□□□□□ -2.23

Retrieved 78 of 20,778 RNA–protein pairs in 88 ms