RNA–Protein interactions for RNA: ENST00000621897.1

BRCA1-229, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 5

Gene BRCA1, Length 375 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-229ENST00000621897 SVEP1Q4LDE5 3571 aa0.72□□□□□ -2.29
BRCA1-229ENST00000621897 FLNBO75369 2602 aaKnown RBP0.71□□□□□ -2.3
BRCA1-229ENST00000621897 MUC3AQ02505 3323 aa0.71□□□□□ -2.3
BRCA1-229ENST00000621897 DNAH5Q8TE73 4624 aa0.71□□□□□ -2.3
BRCA1-229ENST00000621897 RPS29P62273 56 aaKnown RBP0.7□□□□□ -2.3
BRCA1-229ENST00000621897 DYNC1H1Q14204 4646 aaKnown RBP0.69□□□□□ -2.3
BRCA1-229ENST00000621897 LPAP08519 4548 aa0.69□□□□□ -2.3
BRCA1-229ENST00000621897 HYDINQ4G0P3 5121 aa0.69□□□□□ -2.3
BRCA1-229ENST00000621897 HSPG2P98160 4391 aa0.69□□□□□ -2.3
BRCA1-229ENST00000621897 FLGP20930 4061 aaPredicted RBP0.69□□□□□ -2.3
BRCA1-229ENST00000621897 FAT3Q8TDW7 4589 aa0.68□□□□□ -2.3
BRCA1-229ENST00000621897 COL7A1Q02388 2944 aa0.68□□□□□ -2.3
BRCA1-229ENST00000621897 FAT1Q14517 4588 aa0.67□□□□□ -2.3
BRCA1-229ENST00000621897 LRP1Q07954 4544 aaKnown RBP0.67□□□□□ -2.3
BRCA1-229ENST00000621897 RYR2Q92736 4967 aa0.64□□□□□ -2.31
BRCA1-229ENST00000621897 SPRR2DP22532 72 aa0.63□□□□□ -2.31
BRCA1-229ENST00000621897 KRTAP21-1Q3LI58 79 aa0.63□□□□□ -2.31
BRCA1-229ENST00000621897 HERC1Q15751 4861 aa0.63□□□□□ -2.31
BRCA1-229ENST00000621897 LRP1BQ9NZR2 4599 aa0.63□□□□□ -2.31
BRCA1-229ENST00000621897 DNHD1Q96M86 4753 aa0.62□□□□□ -2.31
BRCA1-229ENST00000621897 MUC5ACP98088 5654 aa0.61□□□□□ -2.31
BRCA1-229ENST00000621897 MUC17Q685J3 4493 aa0.61□□□□□ -2.31
BRCA1-229ENST00000621897 SYNE1Q8NF91 8797 aaKnown RBP0.6□□□□□ -2.31
BRCA1-229ENST00000621897 SPRR2BP35325 72 aa0.6□□□□□ -2.31
BRCA1-229ENST00000621897 RYR1P21817 5038 aa0.59□□□□□ -2.31
BRCA1-229ENST00000621897 KRTAP8-1Q8IUC2 63 aa0.59□□□□□ -2.31
BRCA1-229ENST00000621897 RYR3Q15413 4870 aa0.59□□□□□ -2.32
BRCA1-229ENST00000621897 SMR3BP02814 79 aaPredicted RBP0.58□□□□□ -2.32
BRCA1-229ENST00000621897 KMT2CQ8NEZ4 4911 aaKnown RBP0.57□□□□□ -2.32
BRCA1-229ENST00000621897 GPR98Q8WXG9 6306 aa0.56□□□□□ -2.32
BRCA1-229ENST00000621897 BIRC6Q9NR09 4857 aa0.56□□□□□ -2.32
BRCA1-229ENST00000621897 ABCA13Q86UQ4 5058 aa0.56□□□□□ -2.32
BRCA1-229ENST00000621897 HERC2O95714 4834 aa0.55□□□□□ -2.32
BRCA1-229ENST00000621897 EPPK1P58107 5090 aaKnown RBP0.55□□□□□ -2.32
BRCA1-229ENST00000621897 LRP2P98164 4655 aa0.54□□□□□ -2.32
BRCA1-229ENST00000621897 MT1AP04731 61 aa0.54□□□□□ -2.32
BRCA1-229ENST00000621897 RNF213Q63HN8 5207 aa0.53□□□□□ -2.32
BRCA1-229ENST00000621897 PCLOQ9Y6V0 5065 aa0.53□□□□□ -2.32
BRCA1-229ENST00000621897 SPRR2AP35326 72 aa0.53□□□□□ -2.32
BRCA1-229ENST00000621897 KIAA1109Q2LD37 5005 aa0.53□□□□□ -2.32
BRCA1-229ENST00000621897 MT1HL1P0DM35 61 aa0.51□□□□□ -2.33
BRCA1-229ENST00000621897 KRTAP19-5Q3LI72 72 aa0.51□□□□□ -2.33
BRCA1-229ENST00000621897 KRTAP6-2Q3LI66 62 aa0.5□□□□□ -2.33
BRCA1-229ENST00000621897 SPRR2GQ9BYE4 73 aa0.49□□□□□ -2.33
BRCA1-229ENST00000621897 FAT4Q6V0I7 4981 aa0.49□□□□□ -2.33
BRCA1-229ENST00000621897 UBR4Q5T4S7 5183 aa0.48□□□□□ -2.33
BRCA1-229ENST00000621897 KRTAP19-2Q3LHN2 52 aa0.48□□□□□ -2.33
BRCA1-229ENST00000621897 HMCN2Q8NDA2 5059 aa0.48□□□□□ -2.33
BRCA1-229ENST00000621897 MT1XP80297 61 aa0.47□□□□□ -2.33
BRCA1-229ENST00000621897 MT1FP04733 61 aa0.45□□□□□ -2.34
BRCA1-229ENST00000621897 SPRR2EP22531 72 aa0.45□□□□□ -2.34
BRCA1-229ENST00000621897 KRTAP19-8Q3LI54 63 aa0.45□□□□□ -2.34
BRCA1-229ENST00000621897 MT2AP02795 61 aa0.44□□□□□ -2.34
BRCA1-229ENST00000621897 SPRR2FQ96RM1 72 aa0.44□□□□□ -2.34
BRCA1-229ENST00000621897 SSPOA2VEC9 5147 aa0.44□□□□□ -2.34
BRCA1-229ENST00000621897 MUC2Q02817 5179 aa0.43□□□□□ -2.34
BRCA1-229ENST00000621897 PHGR1C9JFL3 82 aa0.43□□□□□ -2.34
BRCA1-229ENST00000621897 MT1EP04732 61 aa0.43□□□□□ -2.34
BRCA1-229ENST00000621897 MT1BP07438 61 aa0.43□□□□□ -2.34
BRCA1-229ENST00000621897 MT1GP13640 62 aa0.43□□□□□ -2.34
BRCA1-229ENST00000621897 MT1HP80294 61 aa0.43□□□□□ -2.34
BRCA1-229ENST00000621897 MT1LQ93083 61 aa0.43□□□□□ -2.34
BRCA1-229ENST00000621897 USH2AO75445 5202 aa0.43□□□□□ -2.34
BRCA1-229ENST00000621897 KMT2DO14686 5537 aa0.42□□□□□ -2.34
BRCA1-229ENST00000621897 KRTAP19-7Q3SYF9 63 aa0.4□□□□□ -2.35
BRCA1-229ENST00000621897 MT1MQ8N339 61 aa0.38□□□□□ -2.35
BRCA1-229ENST00000621897 MDN1Q9NU22 5596 aa0.38□□□□□ -2.35
BRCA1-229ENST00000621897 MUC12Q9UKN1 5478 aa0.37□□□□□ -2.35
BRCA1-229ENST00000621897 KRTAP6-1Q3LI64 71 aa0.37□□□□□ -2.35
BRCA1-229ENST00000621897 SYNE2Q8WXH0 6885 aaKnown RBP0.36□□□□□ -2.35
BRCA1-229ENST00000621897 FSIP2Q5CZC0 6907 aa0.32□□□□□ -2.36
BRCA1-229ENST00000621897 KRTAP19-6Q3LI70 58 aa0.3□□□□□ -2.36
BRCA1-229ENST00000621897 MT4P47944 62 aa0.28□□□□□ -2.36
BRCA1-229ENST00000621897 DSTQ03001 7570 aaKnown RBP0.27□□□□□ -2.37
BRCA1-229ENST00000621897 NEBP20929 6669 aa0.24□□□□□ -2.37
BRCA1-229ENST00000621897 KRTAP20-2Q3LI61 65 aa0.23□□□□□ -2.37
BRCA1-229ENST00000621897 MACF1Q9UPN3 7388 aaKnown RBP0.2□□□□□ -2.38
BRCA1-229ENST00000621897 KRTAP20-1Q3LI63 56 aa0.19□□□□□ -2.38
Retrieved 78 of 20,778 RNA–protein pairs in 37.6 ms