RNA–Protein interactions for RNA: ENST00000621897.1

BRCA1-229, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 5

Gene BRCA1, Length 375 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-229ENST00000621897 AEBP2Q6ZN18 517 aaPredicted RBP27.52■■■□□ 2
BRCA1-229ENST00000621897 CHIC1Q5VXU3 224 aa26.58■■□□□ 1.85
BRCA1-229ENST00000621897 PHF23Q9BUL5 403 aaPredicted RBP23.41■■□□□ 1.34
BRCA1-229ENST00000621897 SENP3Q9H4L4 574 aaPredicted RBP23.28■■□□□ 1.32
BRCA1-229ENST00000621897 FOXD1Q16676 465 aa21.71■■□□□ 1.07
BRCA1-229ENST00000621897 PLPPR3Q6T4P5 718 aa21.43■■□□□ 1.02
BRCA1-229ENST00000621897 PPP6R1Q9UPN7 881 aa20.74■□□□□ 0.91
BRCA1-229ENST00000621897 ADRA2BP18089 450 aa20.68■□□□□ 0.9
BRCA1-229ENST00000621897 PIAS4Q8N2W9 510 aaPredicted RBP20.38■□□□□ 0.85
BRCA1-229ENST00000621897 MSH5O43196 834 aa20.02■□□□□ 0.8
BRCA1-229ENST00000621897 PPP4R3CPQ6ZMV5 832 aa18.9■□□□□ 0.62
BRCA1-229ENST00000621897 MAPK8IP2Q13387 824 aaPredicted RBP18.86■□□□□ 0.61
BRCA1-229ENST00000621897 SCAF1Q9H7N4 1312 aaKnown RBP18.79■□□□□ 0.6
BRCA1-229ENST00000621897 POTEDQ86YR6 584 aa18.72■□□□□ 0.59
BRCA1-229ENST00000621897 DMRT2Q9Y5R5 561 aa18.57■□□□□ 0.56
BRCA1-229ENST00000621897 CNKSR2Q8WXI2 1034 aa18.38■□□□□ 0.53
BRCA1-229ENST00000621897 NCBP3Q53F19 620 aaKnown RBP18.25■□□□□ 0.51
BRCA1-229ENST00000621897 KCNA4P22459 653 aa18.24■□□□□ 0.51
BRCA1-229ENST00000621897 HOXD11P31277 338 aaPredicted RBP18.1■□□□□ 0.49
BRCA1-229ENST00000621897 RNF216Q9NWF9 866 aaPredicted RBP18.09■□□□□ 0.49
BRCA1-229ENST00000621897 NPM3O75607 178 aaKnown RBP18.08■□□□□ 0.48
BRCA1-229ENST00000621897 DCAF8L1A6NGE4 600 aa17.78■□□□□ 0.44
BRCA1-229ENST00000621897 DNAJC5BQ9UF47 199 aa17.53■□□□□ 0.4
BRCA1-229ENST00000621897 SLC4A1APQ9BWU0 796 aaKnown RBP17.27■□□□□ 0.36
BRCA1-229ENST00000621897 GRWD1Q9BQ67 446 aaKnown RBP eCLIP17.22■□□□□ 0.35
BRCA1-229ENST00000621897 RNF39Q9H2S5 420 aa17.18■□□□□ 0.34
BRCA1-229ENST00000621897 SLC4A2P04920 1241 aa17.16■□□□□ 0.34
BRCA1-229ENST00000621897 U3KPZ7 1027 aaPredicted RBP16.98■□□□□ 0.31
BRCA1-229ENST00000621897 C1QBPQ07021 282 aaKnown RBP16.92■□□□□ 0.3
BRCA1-229ENST00000621897 CACNB1Q02641 598 aaPredicted RBP16.89■□□□□ 0.29
BRCA1-229ENST00000621897 ZBTB22O15209 634 aa16.81■□□□□ 0.28
BRCA1-229ENST00000621897 FOXD4L1Q9NU39 408 aa16.8■□□□□ 0.28
BRCA1-229ENST00000621897 MYCNP04198 464 aaPredicted RBP16.67■□□□□ 0.26
BRCA1-229ENST00000621897 SPINK5Q9NQ38 1064 aaPredicted RBP16.59■□□□□ 0.25
BRCA1-229ENST00000621897 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP16.56■□□□□ 0.24
BRCA1-229ENST00000621897 HNRNPUL2Q1KMD3 747 aaKnown RBP16.56■□□□□ 0.24
BRCA1-229ENST00000621897 EHMT2Q96KQ7 1210 aa16.55■□□□□ 0.24
BRCA1-229ENST00000621897 SAMD1Q6SPF0 538 aaPredicted RBP16.52■□□□□ 0.24
BRCA1-229ENST00000621897 CAPN15O75808 1086 aa16.48■□□□□ 0.23
BRCA1-229ENST00000621897 CSRNP3Q8WYN3 585 aa16.48■□□□□ 0.23
BRCA1-229ENST00000621897 APLP2Q06481 763 aa16.42■□□□□ 0.22
BRCA1-229ENST00000621897 TRHP20396 242 aaPredicted RBP16.36■□□□□ 0.21
BRCA1-229ENST00000621897 ATF5Q9Y2D1 282 aaPredicted RBP16.34■□□□□ 0.21
BRCA1-229ENST00000621897 ZNF219Q9P2Y4 722 aaPredicted RBP16.3■□□□□ 0.2
BRCA1-229ENST00000621897 DSG3P32926 999 aa16.28■□□□□ 0.2
BRCA1-229ENST00000621897 ABCB7O75027 752 aa16.19■□□□□ 0.18
BRCA1-229ENST00000621897 ATXN8OSP0DMR3 200 aa16.18■□□□□ 0.18
BRCA1-229ENST00000621897 POLA2Q14181 598 aa16.03■□□□□ 0.16
BRCA1-229ENST00000621897 ZBTB12Q9Y330 459 aaPredicted RBP15.67■□□□□ 0.1
BRCA1-229ENST00000621897 MKRN4PQ13434 485 aaPredicted RBP15.6■□□□□ 0.09
BRCA1-229ENST00000621897 FBLN2P98095 1184 aa15.54■□□□□ 0.08
BRCA1-229ENST00000621897 OSCARQ8IYS5 282 aa15.53■□□□□ 0.08
BRCA1-229ENST00000621897 RBM42Q9BTD8 480 aaKnown RBP15.44■□□□□ 0.06
BRCA1-229ENST00000621897 SPDYE2BA6NHP3 402 aa15.27■□□□□ 0.04
BRCA1-229ENST00000621897 SPDYE6P0CI01 402 aa15.27■□□□□ 0.04
BRCA1-229ENST00000621897 SPDYE2Q495Y8 402 aa15.27■□□□□ 0.04
BRCA1-229ENST00000621897 AKT1S1Q96B36 256 aa15.23■□□□□ 0.03
BRCA1-229ENST00000621897 ZNF692Q9BU19 519 aaPredicted RBP15.19■□□□□ 0.02
BRCA1-229ENST00000621897 SSUH2Q9Y2M2 353 aa15.18■□□□□ 0.02
BRCA1-229ENST00000621897 REM2Q8IYK8 340 aaPredicted RBP15.12■□□□□ 0.01
BRCA1-229ENST00000621897 SPDYE4A6NLX3 237 aa15.07■□□□□ 0
BRCA1-229ENST00000621897 PABPN1Q86U42 306 aaKnown RBP eCLIP15.01□□□□□ -0.01
BRCA1-229ENST00000621897 PITPNM1O00562 1244 aa14.97□□□□□ -0.01
BRCA1-229ENST00000621897 CHRDL2Q6WN34 429 aa14.95□□□□□ -0.02
BRCA1-229ENST00000621897 FKBP8Q14318 412 aa14.89□□□□□ -0.03
BRCA1-229ENST00000621897 SPDYE1Q8NFV5 336 aaPredicted RBP14.87□□□□□ -0.03
BRCA1-229ENST00000621897 CLEC11AQ9Y240 323 aa14.86□□□□□ -0.03
BRCA1-229ENST00000621897 PROM2Q8N271 834 aa14.81□□□□□ -0.04
BRCA1-229ENST00000621897 POTEHQ6S545 545 aa14.76□□□□□ -0.05
BRCA1-229ENST00000621897 PIP4P2Q8N4L2 257 aa14.73□□□□□ -0.05
BRCA1-229ENST00000621897 FXR2P51116 673 aaKnown RBP eCLIP14.72□□□□□ -0.05
BRCA1-229ENST00000621897 PRR29P0C7W0 189 aa14.66□□□□□ -0.06
BRCA1-229ENST00000621897 STAG3Q9UJ98 1225 aa14.63□□□□□ -0.07
BRCA1-229ENST00000621897 PRKAR2AP13861 404 aaKnown RBP14.57□□□□□ -0.08
BRCA1-229ENST00000621897 CHADLQ6NUI6 762 aa14.57□□□□□ -0.08
BRCA1-229ENST00000621897 CREBZFQ9NS37 354 aa14.47□□□□□ -0.09
BRCA1-229ENST00000621897 FARP1Q9Y4F1 1045 aaPredicted RBP14.35□□□□□ -0.11
BRCA1-229ENST00000621897 FBXO3Q9UK99 471 aa14.33□□□□□ -0.12
BRCA1-229ENST00000621897 MNX1P50219 401 aaPredicted RBP14.31□□□□□ -0.12
BRCA1-229ENST00000621897 MIER1Q8N108 512 aa14.3□□□□□ -0.12
BRCA1-229ENST00000621897 HAX1O00165 279 aa14.29□□□□□ -0.12
BRCA1-229ENST00000621897 PLCD3Q8N3E9 789 aa14.25□□□□□ -0.13
BRCA1-229ENST00000621897 EVX2Q03828 476 aa14.24□□□□□ -0.13
BRCA1-229ENST00000621897 C19orf67A6NJJ6 358 aa14.22□□□□□ -0.13
BRCA1-229ENST00000621897 VASPP50552 380 aaPredicted RBP14.22□□□□□ -0.13
BRCA1-229ENST00000621897 PLEKHG5O94827 1062 aa14.17□□□□□ -0.14
BRCA1-229ENST00000621897 NPM1P06748 294 aaKnown RBP eCLIP14.14□□□□□ -0.15
BRCA1-229ENST00000621897 CD44P16070 742 aaKnown RBP14.14□□□□□ -0.15
BRCA1-229ENST00000621897 SP7Q8TDD2 431 aaPredicted RBP14.08□□□□□ -0.16
BRCA1-229ENST00000621897 ZBTB47Q9UFB7 747 aaPredicted RBP14.05□□□□□ -0.16
BRCA1-229ENST00000621897 IFNLR1Q8IU57 520 aaPredicted RBP14.04□□□□□ -0.16
BRCA1-229ENST00000621897 ZRANB1Q9UGI0 708 aa14.02□□□□□ -0.17
BRCA1-229ENST00000621897 NUBP1P53384 320 aa14.01□□□□□ -0.17
BRCA1-229ENST00000621897 RASEFQ8IZ41 740 aa14.01□□□□□ -0.17
BRCA1-229ENST00000621897 KLHL34Q8N239 644 aa14□□□□□ -0.17
BRCA1-229ENST00000621897 TSPYL2Q9H2G4 693 aaPredicted RBP13.97□□□□□ -0.17
BRCA1-229ENST00000621897 PAK3O75914 559 aaPredicted RBP13.95□□□□□ -0.18
BRCA1-229ENST00000621897 ZNF579Q8NAF0 562 aaKnown RBP13.94□□□□□ -0.18
BRCA1-229ENST00000621897 PHF12Q96QT6 1004 aa13.91□□□□□ -0.18
BRCA1-229ENST00000621897 GABBR2O75899 941 aa13.89□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 42.5 ms