RNA–Protein interactions for RNA: ENST00000620787.4

PDLIM3-212, Transcript of PDZ and LIM domain 3, humanhuman

TSL 4 BASIC

Gene PDLIM3, Length 2,352 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3-212ENST00000620787 SSPOA2VEC9 5147 aa6.57□□□□□ -1.36
PDLIM3-212ENST00000620787 FSIP2Q5CZC0 6907 aa6.55□□□□□ -1.36
PDLIM3-212ENST00000620787 KRTAP9-1A8MXZ3 250 aaPredicted RBP6.53□□□□□ -1.36
PDLIM3-212ENST00000620787 KRTAP9-2Q9BYQ4 174 aa6.53□□□□□ -1.36
PDLIM3-212ENST00000620787 KRTAP9-6A0A140TA67 174 aa6.51□□□□□ -1.37
PDLIM3-212ENST00000620787 LCE3BQ5TA77 95 aa6.37□□□□□ -1.39
PDLIM3-212ENST00000620787 KRTAP4-3Q9BYR4 195 aa6.33□□□□□ -1.4
PDLIM3-212ENST00000620787 KRTAP19-6Q3LI70 58 aa6.32□□□□□ -1.4
PDLIM3-212ENST00000620787 MT1GP13640 62 aa6.27□□□□□ -1.41
PDLIM3-212ENST00000620787 KRTAP5-3Q6L8H2 238 aa6.24□□□□□ -1.41
PDLIM3-212ENST00000620787 MT1MQ8N339 61 aa6.21□□□□□ -1.42
PDLIM3-212ENST00000620787 KRTAP9-9Q9BYP9 154 aa6.18□□□□□ -1.42
PDLIM3-212ENST00000620787 KRTAP9-4Q9BYQ2 154 aa6.18□□□□□ -1.42
PDLIM3-212ENST00000620787 FCGBPQ9Y6R7 5405 aaPredicted RBP6.16□□□□□ -1.42
PDLIM3-212ENST00000620787 KRTAP19-3Q7Z4W3 81 aa6.15□□□□□ -1.42
PDLIM3-212ENST00000620787 CRCT1Q9UGL9 99 aa6.1□□□□□ -1.43
PDLIM3-212ENST00000620787 KRTAP12-4P60329 112 aa6.08□□□□□ -1.44
PDLIM3-212ENST00000620787 MUC12Q9UKN1 5478 aa6.08□□□□□ -1.44
PDLIM3-212ENST00000620787 LCE1DQ5T752 114 aa6□□□□□ -1.45
PDLIM3-212ENST00000620787 KRTAP4-2Q9BYR5 136 aa6□□□□□ -1.45
PDLIM3-212ENST00000620787 KRTAP4-12Q9BQ66 201 aa5.96□□□□□ -1.45
PDLIM3-212ENST00000620787 KRTAP4-9Q9BYQ8 210 aa5.96□□□□□ -1.45
PDLIM3-212ENST00000620787 LCE5AQ5TCM9 118 aa5.92□□□□□ -1.46
PDLIM3-212ENST00000620787 MACF1Q9UPN3 7388 aaKnown RBP5.88□□□□□ -1.47
PDLIM3-212ENST00000620787 DSTQ03001 7570 aaKnown RBP5.79□□□□□ -1.48
PDLIM3-212ENST00000620787 SPRR2FQ96RM1 72 aa5.79□□□□□ -1.48
PDLIM3-212ENST00000620787 MT1AP04731 61 aa5.74□□□□□ -1.49
PDLIM3-212ENST00000620787 SYNE2Q8WXH0 6885 aaKnown RBP5.73□□□□□ -1.49
PDLIM3-212ENST00000620787 KRTAP6-1Q3LI64 71 aa5.7□□□□□ -1.5
PDLIM3-212ENST00000620787 SYNE1Q8NF91 8797 aaKnown RBP5.65□□□□□ -1.5
PDLIM3-212ENST00000620787 MDN1Q9NU22 5596 aa5.63□□□□□ -1.51
PDLIM3-212ENST00000620787 LCE3DQ9BYE3 92 aa5.59□□□□□ -1.51
PDLIM3-212ENST00000620787 LCE3EQ5T5B0 92 aa5.54□□□□□ -1.52
PDLIM3-212ENST00000620787 KRTAP5-5Q701N2 237 aaPredicted RBP5.52□□□□□ -1.53
PDLIM3-212ENST00000620787 KRTAP4-11Q9BYQ6 195 aa5.51□□□□□ -1.53
PDLIM3-212ENST00000620787 KRTAP9-7A8MTY7 169 aa5.49□□□□□ -1.53
PDLIM3-212ENST00000620787 PRM1P04553 51 aa5.43□□□□□ -1.54
PDLIM3-212ENST00000620787 KRTAP5-9P26371 169 aa5.43□□□□□ -1.54
PDLIM3-212ENST00000620787 LCE1AQ5T7P2 110 aa5.42□□□□□ -1.54
PDLIM3-212ENST00000620787 SPRR2EP22531 72 aa5.31□□□□□ -1.56
PDLIM3-212ENST00000620787 SPRR2BP35325 72 aa5.31□□□□□ -1.56
PDLIM3-212ENST00000620787 SPRR2AP35326 72 aa5.31□□□□□ -1.56
PDLIM3-212ENST00000620787 KRTAP6-2Q3LI66 62 aa5.21□□□□□ -1.58
PDLIM3-212ENST00000620787 SPRR2DP22532 72 aa5.08□□□□□ -1.6
PDLIM3-212ENST00000620787 KRTAP6-3Q3LI67 103 aa5.08□□□□□ -1.6
PDLIM3-212ENST00000620787 MT3P25713 68 aa5□□□□□ -1.61
PDLIM3-212ENST00000620787 OBSCNQ5VST9 7968 aa4.82□□□□□ -1.64
PDLIM3-212ENST00000620787 NEBP20929 6669 aa4.81□□□□□ -1.64
PDLIM3-212ENST00000620787 KRTAP2-2Q9BYT5 123 aa4.81□□□□□ -1.64
PDLIM3-212ENST00000620787 KRTAP5-4Q6L8H1 288 aa4.65□□□□□ -1.66
PDLIM3-212ENST00000620787 MT4P47944 62 aa4.51□□□□□ -1.69
PDLIM3-212ENST00000620787 KRTAP5-6Q6L8G9 129 aaPredicted RBP4.5□□□□□ -1.69
PDLIM3-212ENST00000620787 KRTAP5-2Q701N4 177 aa4.42□□□□□ -1.7
PDLIM3-212ENST00000620787 KRTAP20-2Q3LI61 65 aa4.39□□□□□ -1.71
PDLIM3-212ENST00000620787 LCE4AQ5TA78 99 aa4.39□□□□□ -1.71
PDLIM3-212ENST00000620787 HMCN1Q96RW7 5635 aa4.38□□□□□ -1.71
PDLIM3-212ENST00000620787 MUC5ACP98088 5654 aa4.28□□□□□ -1.72
PDLIM3-212ENST00000620787 KRTAP20-1Q3LI63 56 aa4.18□□□□□ -1.74
PDLIM3-212ENST00000620787 KRTAP5-10Q6L8G5 202 aa4.08□□□□□ -1.76
PDLIM3-212ENST00000620787 LCE1EQ5T753 118 aa4.02□□□□□ -1.77
PDLIM3-212ENST00000620787 KRTAP5-1Q6L8H4 278 aa4□□□□□ -1.77
PDLIM3-212ENST00000620787 LCE1BQ5T7P3 118 aa4□□□□□ -1.77
PDLIM3-212ENST00000620787 LCE1FQ5T754 118 aa3.98□□□□□ -1.77
PDLIM3-212ENST00000620787 LCE1CQ5T751 118 aa3.81□□□□□ -1.8
PDLIM3-212ENST00000620787 KRTAP21-2Q3LI59 83 aa3.67□□□□□ -1.82
PDLIM3-212ENST00000620787 KRTAP4-4Q9BYR3 166 aa3.57□□□□□ -1.84
PDLIM3-212ENST00000620787 AHNAK2Q8IVF2 5795 aa3.57□□□□□ -1.84
PDLIM3-212ENST00000620787 KRTAP5-11Q6L8G4 156 aa3.56□□□□□ -1.84
PDLIM3-212ENST00000620787 KRTAP5-8O75690 187 aa3.54□□□□□ -1.84
PDLIM3-212ENST00000620787 KRTAP21-1Q3LI58 79 aa3.46□□□□□ -1.86
PDLIM3-212ENST00000620787 KRTAP5-7Q6L8G8 165 aa3.41□□□□□ -1.86
PDLIM3-212ENST00000620787 GPR98Q8WXG9 6306 aa3.25□□□□□ -1.89
PDLIM3-212ENST00000620787 MUC5BQ9HC84 5762 aaPredicted RBP3.25□□□□□ -1.89
PDLIM3-212ENST00000620787 MUC19Q7Z5P9 8384 aa3.21□□□□□ -1.9
PDLIM3-212ENST00000620787 PHGR1C9JFL3 82 aa2.81□□□□□ -1.96
PDLIM3-212ENST00000620787 AHNAKQ09666 5890 aaKnown RBP2.56□□□□□ -2
PDLIM3-212ENST00000620787 MUC16Q8WXI7 14507 aa1.97□□□□□ -2.09
Retrieved 77 of 20,778 RNA–protein pairs in 115 ms