RNA–Protein interactions for RNA: ENST00000617451.4

PTPRF-216, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 5 BASIC

Gene PTPRF, Length 1,129 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-216ENST00000617451 KRTAP5-3Q6L8H2 238 aa8.39□□□□□ -1.07
PTPRF-216ENST00000617451 KRTAP4-7Q9BYR0 210 aa8.38□□□□□ -1.07
PTPRF-216ENST00000617451 A0A1B0GU69 56 aa8.35□□□□□ -1.07
PTPRF-216ENST00000617451 H7BZZ5 65 aa8.3□□□□□ -1.08
PTPRF-216ENST00000617451 COX7CP15954 63 aa8.29□□□□□ -1.08
PTPRF-216ENST00000617451 KRTAP20-2Q3LI61 65 aa8.29□□□□□ -1.08
PTPRF-216ENST00000617451 KRTAP12-3P60328 96 aa8.27□□□□□ -1.09
PTPRF-216ENST00000617451 KRTAP5-5Q701N2 237 aaPredicted RBP8.22□□□□□ -1.09
PTPRF-216ENST00000617451 SPRR5A0A1B0GTR4 108 aa8.2□□□□□ -1.1
PTPRF-216ENST00000617451 KRTAP12-4P60329 112 aa8.1□□□□□ -1.11
PTPRF-216ENST00000617451 SYNE1Q8NF91 8797 aaKnown RBP8.04□□□□□ -1.12
PTPRF-216ENST00000617451 LOC100996750A0A140TA64 210 aa7.96□□□□□ -1.14
PTPRF-216ENST00000617451 PRR15LQ9BU68 103 aa7.95□□□□□ -1.14
PTPRF-216ENST00000617451 LINC01558Q9Y6Z2 57 aa7.79□□□□□ -1.16
PTPRF-216ENST00000617451 KRTAP25-1Q3LHN0 102 aa7.78□□□□□ -1.16
PTPRF-216ENST00000617451 KRTAP19-4Q3LI73 84 aa7.78□□□□□ -1.16
PTPRF-216ENST00000617451 ANAPC13Q9BS18 74 aa7.71□□□□□ -1.18
PTPRF-216ENST00000617451 UQCR11O14957 56 aa7.7□□□□□ -1.18
PTPRF-216ENST00000617451 KRTAP4-11Q9BYQ6 195 aa7.68□□□□□ -1.18
PTPRF-216ENST00000617451 ATP5EP56381 51 aaPredicted RBP7.65□□□□□ -1.18
PTPRF-216ENST00000617451 CCDC179H3BU77 68 aa7.6□□□□□ -1.19
PTPRF-216ENST00000617451 KRTAP5-2Q701N4 177 aa7.6□□□□□ -1.19
PTPRF-216ENST00000617451 KRTAP15-1Q3LI76 137 aa7.57□□□□□ -1.2
PTPRF-216ENST00000617451 LCE3CQ5T5A8 94 aa7.57□□□□□ -1.2
PTPRF-216ENST00000617451 MT1AP04731 61 aa7.5□□□□□ -1.21
PTPRF-216ENST00000617451 KRTAP6-1Q3LI64 71 aa7.49□□□□□ -1.21
PTPRF-216ENST00000617451 MIR22HGQ0VDD5 57 aa7.48□□□□□ -1.21
PTPRF-216ENST00000617451 KRTAP23-1A1A580 65 aa7.47□□□□□ -1.21
PTPRF-216ENST00000617451 KRTAP5-8O75690 187 aa7.43□□□□□ -1.22
PTPRF-216ENST00000617451 AHNAKQ09666 5890 aaKnown RBP7.43□□□□□ -1.22
PTPRF-216ENST00000617451 K7ERS5 55 aa7.41□□□□□ -1.22
PTPRF-216ENST00000617451 MUC5BQ9HC84 5762 aaPredicted RBP7.4□□□□□ -1.22
PTPRF-216ENST00000617451 MUC5ACP98088 5654 aa7.38□□□□□ -1.23
PTPRF-216ENST00000617451 KRTAP9-4Q9BYQ2 154 aa7.3□□□□□ -1.24
PTPRF-216ENST00000617451 TMEM258P61165 79 aa7.27□□□□□ -1.25
PTPRF-216ENST00000617451 OBSCNQ5VST9 7968 aa7.26□□□□□ -1.25
PTPRF-216ENST00000617451 KRTAP6-2Q3LI66 62 aa7.25□□□□□ -1.25
PTPRF-216ENST00000617451 KRTAP9-6A8MVA2 160 aa7.18□□□□□ -1.26
PTPRF-216ENST00000617451 KRTAP9-9Q9BYP9 154 aa7.11□□□□□ -1.27
PTPRF-216ENST00000617451 PSPHP1O15172 72 aa7.07□□□□□ -1.28
PTPRF-216ENST00000617451 V9GYY9 64 aa6.99□□□□□ -1.29
PTPRF-216ENST00000617451 Q1T7F1 81 aa6.98□□□□□ -1.29
PTPRF-216ENST00000617451 CDC42SE1Q9NRR8 79 aa6.96□□□□□ -1.3
PTPRF-216ENST00000617451 RPS28P62857 69 aaKnown RBP6.95□□□□□ -1.3
PTPRF-216ENST00000617451 KRTAP5-1Q6L8H4 278 aa6.9□□□□□ -1.3
PTPRF-216ENST00000617451 MT3P25713 68 aa6.88□□□□□ -1.31
PTPRF-216ENST00000617451 ROMO1P60602 79 aa6.83□□□□□ -1.32
PTPRF-216ENST00000617451 PCP4P48539 62 aa6.82□□□□□ -1.32
PTPRF-216ENST00000617451 A6NED7 52 aa6.79□□□□□ -1.32
PTPRF-216ENST00000617451 LCE1EQ5T753 118 aa6.44□□□□□ -1.38
PTPRF-216ENST00000617451 KRTAP4-2Q9BYR5 136 aa6.13□□□□□ -1.43
PTPRF-216ENST00000617451 LCE1BQ5T7P3 118 aa6.08□□□□□ -1.44
PTPRF-216ENST00000617451 LCE1CQ5T751 118 aa5.98□□□□□ -1.45
PTPRF-216ENST00000617451 SVIPQ8NHG7 77 aa5.83□□□□□ -1.48
PTPRF-216ENST00000617451 KRTAP4-12Q9BQ66 201 aa5.7□□□□□ -1.5
PTPRF-216ENST00000617451 PRO0628Q9UI54 55 aa5.56□□□□□ -1.52
PTPRF-216ENST00000617451 BRK1Q8WUW1 75 aa5.47□□□□□ -1.53
PTPRF-216ENST00000617451 KRTAP5-11Q6L8G4 156 aa5.45□□□□□ -1.54
PTPRF-216ENST00000617451 LCE1FQ5T754 118 aa5.41□□□□□ -1.54
PTPRF-216ENST00000617451 KRTAP5-6Q6L8G9 129 aaPredicted RBP5.4□□□□□ -1.54
PTPRF-216ENST00000617451 LCE3DQ9BYE3 92 aa5.36□□□□□ -1.55
PTPRF-216ENST00000617451 PMAIP1Q13794 54 aa5.18□□□□□ -1.58
PTPRF-216ENST00000617451 KTN1-AS1Q86SY8 53 aa5.11□□□□□ -1.59
PTPRF-216ENST00000617451 PHGR1C9JFL3 82 aa5.07□□□□□ -1.6
PTPRF-216ENST00000617451 LCE3EQ5T5B0 92 aa4.96□□□□□ -1.62
PTPRF-216ENST00000617451 KRTAP21-2Q3LI59 83 aa4.95□□□□□ -1.62
PTPRF-216ENST00000617451 PRAC1Q96KF2 57 aa4.86□□□□□ -1.63
PTPRF-216ENST00000617451 KRTAP4-4Q9BYR3 166 aa4.59□□□□□ -1.67
PTPRF-216ENST00000617451 MUC19Q7Z5P9 8384 aa4.52□□□□□ -1.69
PTPRF-216ENST00000617451 H3BS24 57 aa4.23□□□□□ -1.73
PTPRF-216ENST00000617451 LUZP6Q538Z0 58 aa4.18□□□□□ -1.74
PTPRF-216ENST00000617451 NDUFAF8A1L188 74 aa3.97□□□□□ -1.77
PTPRF-216ENST00000617451 A0A0A0MQY5 61 aa3.87□□□□□ -1.79
PTPRF-216ENST00000617451 KRTAP21-1Q3LI58 79 aa3.86□□□□□ -1.79
PTPRF-216ENST00000617451 PRM1P04553 51 aa3.46□□□□□ -1.86
PTPRF-216ENST00000617451 INE1O15225 51 aa3.4□□□□□ -1.87
PTPRF-216ENST00000617451 MUC16Q8WXI7 14507 aa3.19□□□□□ -1.9
Retrieved 77 of 20,778 RNA–protein pairs in 12 ms