RNA–Protein interactions for RNA: ENST00000617445.4

CCDC28A-203, Transcript of coiled-coil domain containing 28A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC28A, Length 1,240 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-203ENST00000617445 LCE3AQ5TA76 89 aa6.73□□□□□ -1.33
CCDC28A-203ENST00000617445 LCE4AQ5TA78 99 aa6.7□□□□□ -1.34
CCDC28A-203ENST00000617445 V9GYY9 64 aa6.68□□□□□ -1.34
CCDC28A-203ENST00000617445 LCE1DQ5T752 114 aa6.67□□□□□ -1.34
CCDC28A-203ENST00000617445 GPR98Q8WXG9 6306 aa6.66□□□□□ -1.34
CCDC28A-203ENST00000617445 MIR22HGQ0VDD5 57 aa6.65□□□□□ -1.34
CCDC28A-203ENST00000617445 Q1T7F1 81 aa6.62□□□□□ -1.35
CCDC28A-203ENST00000617445 PSPHP1O15172 72 aa6.58□□□□□ -1.36
CCDC28A-203ENST00000617445 MT4P47944 62 aa6.57□□□□□ -1.36
CCDC28A-203ENST00000617445 KRTAP4-12Q9BQ66 201 aa6.55□□□□□ -1.36
CCDC28A-203ENST00000617445 KRTAP4-3Q9BYR4 195 aa6.55□□□□□ -1.36
CCDC28A-203ENST00000617445 KRTAP5-4Q6L8H1 288 aa6.54□□□□□ -1.36
CCDC28A-203ENST00000617445 K7ERS5 55 aa6.53□□□□□ -1.36
CCDC28A-203ENST00000617445 KRTAP12-3P60328 96 aa6.52□□□□□ -1.37
CCDC28A-203ENST00000617445 HMCN1Q96RW7 5635 aa6.51□□□□□ -1.37
CCDC28A-203ENST00000617445 KRTAP9-9Q9BYP9 154 aa6.44□□□□□ -1.38
CCDC28A-203ENST00000617445 KRTAP9-4Q9BYQ2 154 aa6.44□□□□□ -1.38
CCDC28A-203ENST00000617445 KRTAP25-1Q3LHN0 102 aa6.43□□□□□ -1.38
CCDC28A-203ENST00000617445 RPS28P62857 69 aaKnown RBP6.39□□□□□ -1.39
CCDC28A-203ENST00000617445 A6NED7 52 aa6.38□□□□□ -1.39
CCDC28A-203ENST00000617445 PCP4P48539 62 aa6.38□□□□□ -1.39
CCDC28A-203ENST00000617445 KRTAP4-7Q9BYR0 210 aa6.37□□□□□ -1.39
CCDC28A-203ENST00000617445 AHNAK2Q8IVF2 5795 aa6.28□□□□□ -1.4
CCDC28A-203ENST00000617445 KRTAP19-4Q3LI73 84 aa6.28□□□□□ -1.4
CCDC28A-203ENST00000617445 H3BS24 57 aa6.27□□□□□ -1.41
CCDC28A-203ENST00000617445 KRTAP5-10Q6L8G5 202 aa6.26□□□□□ -1.41
CCDC28A-203ENST00000617445 KRTAP23-1A1A580 65 aa6.23□□□□□ -1.41
CCDC28A-203ENST00000617445 KRTAP5-5Q701N2 237 aaPredicted RBP6.22□□□□□ -1.41
CCDC28A-203ENST00000617445 CDC42SE1Q9NRR8 79 aa6.19□□□□□ -1.42
CCDC28A-203ENST00000617445 SPRR5A0A1B0GTR4 108 aa6.17□□□□□ -1.42
CCDC28A-203ENST00000617445 KRTAP20-2Q3LI61 65 aa6.16□□□□□ -1.42
CCDC28A-203ENST00000617445 KRTAP12-4P60329 112 aa6.14□□□□□ -1.43
CCDC28A-203ENST00000617445 KRTAP5-3Q6L8H2 238 aa6.1□□□□□ -1.43
CCDC28A-203ENST00000617445 ROMO1P60602 79 aa6.08□□□□□ -1.44
CCDC28A-203ENST00000617445 KRTAP15-1Q3LI76 137 aa6.07□□□□□ -1.44
CCDC28A-203ENST00000617445 KRTAP5-7Q6L8G8 165 aa6.06□□□□□ -1.44
CCDC28A-203ENST00000617445 LCE3CQ5T5A8 94 aa6□□□□□ -1.45
CCDC28A-203ENST00000617445 SYNE1Q8NF91 8797 aaKnown RBP5.93□□□□□ -1.46
CCDC28A-203ENST00000617445 KRTAP4-2Q9BYR5 136 aa5.9□□□□□ -1.46
CCDC28A-203ENST00000617445 MT1AP04731 61 aa5.78□□□□□ -1.48
CCDC28A-203ENST00000617445 KRTAP4-11Q9BYQ6 195 aa5.75□□□□□ -1.49
CCDC28A-203ENST00000617445 KRTAP6-1Q3LI64 71 aa5.71□□□□□ -1.5
CCDC28A-203ENST00000617445 KRTAP5-2Q701N4 177 aa5.7□□□□□ -1.5
CCDC28A-203ENST00000617445 KRTAP9-6A8MVA2 160 aa5.6□□□□□ -1.51
CCDC28A-203ENST00000617445 BRK1Q8WUW1 75 aa5.6□□□□□ -1.51
CCDC28A-203ENST00000617445 KRTAP6-2Q3LI66 62 aa5.49□□□□□ -1.53
CCDC28A-203ENST00000617445 KRTAP5-8O75690 187 aa5.45□□□□□ -1.54
CCDC28A-203ENST00000617445 OBSCNQ5VST9 7968 aa5.32□□□□□ -1.56
CCDC28A-203ENST00000617445 MT3P25713 68 aa5.32□□□□□ -1.56
CCDC28A-203ENST00000617445 PMAIP1Q13794 54 aa5.28□□□□□ -1.56
CCDC28A-203ENST00000617445 MUC5ACP98088 5654 aa5.2□□□□□ -1.58
CCDC28A-203ENST00000617445 MUC5BQ9HC84 5762 aaPredicted RBP5.19□□□□□ -1.58
CCDC28A-203ENST00000617445 AHNAKQ09666 5890 aaKnown RBP5.17□□□□□ -1.58
CCDC28A-203ENST00000617445 KRTAP5-1Q6L8H4 278 aa5.13□□□□□ -1.59
CCDC28A-203ENST00000617445 SVIPQ8NHG7 77 aa5.11□□□□□ -1.59
CCDC28A-203ENST00000617445 PRAC1Q96KF2 57 aa5.02□□□□□ -1.61
CCDC28A-203ENST00000617445 PRO0628Q9UI54 55 aa4.98□□□□□ -1.61
CCDC28A-203ENST00000617445 LCE1EQ5T753 118 aa4.93□□□□□ -1.62
CCDC28A-203ENST00000617445 KTN1-AS1Q86SY8 53 aa4.73□□□□□ -1.65
CCDC28A-203ENST00000617445 LCE1BQ5T7P3 118 aa4.58□□□□□ -1.68
CCDC28A-203ENST00000617445 LCE1CQ5T751 118 aa4.56□□□□□ -1.68
CCDC28A-203ENST00000617445 LCE3DQ9BYE3 92 aa4.31□□□□□ -1.72
CCDC28A-203ENST00000617445 LUZP6Q538Z0 58 aa4.29□□□□□ -1.72
CCDC28A-203ENST00000617445 A0A0A0MQY5 61 aa4.27□□□□□ -1.73
CCDC28A-203ENST00000617445 KRTAP5-6Q6L8G9 129 aaPredicted RBP4.14□□□□□ -1.75
CCDC28A-203ENST00000617445 KRTAP5-11Q6L8G4 156 aa4.13□□□□□ -1.75
CCDC28A-203ENST00000617445 LCE1FQ5T754 118 aa4.09□□□□□ -1.75
CCDC28A-203ENST00000617445 LCE3EQ5T5B0 92 aa4.06□□□□□ -1.76
CCDC28A-203ENST00000617445 KRTAP21-2Q3LI59 83 aa3.78□□□□□ -1.8
CCDC28A-203ENST00000617445 PHGR1C9JFL3 82 aa3.64□□□□□ -1.83
CCDC28A-203ENST00000617445 NDUFAF8A1L188 74 aa3.48□□□□□ -1.85
CCDC28A-203ENST00000617445 KRTAP4-4Q9BYR3 166 aa3.43□□□□□ -1.86
CCDC28A-203ENST00000617445 MUC19Q7Z5P9 8384 aa3.28□□□□□ -1.88
CCDC28A-203ENST00000617445 PRM1P04553 51 aa3.1□□□□□ -1.91
CCDC28A-203ENST00000617445 INE1O15225 51 aa2.85□□□□□ -1.95
CCDC28A-203ENST00000617445 KRTAP21-1Q3LI58 79 aa2.81□□□□□ -1.96
CCDC28A-203ENST00000617445 MUC16Q8WXI7 14507 aa2.36□□□□□ -2.03
Retrieved 77 of 20,778 RNA–protein pairs in 65.6 ms