RNA–Protein interactions for RNA: ENST00000617310.4

SMARCA1-205, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 1, humanhuman

TSL 2

Gene SMARCA1, Length 4,291 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1-205ENST00000617310 LCE2AQ5TA79 106 aaPredicted RBP3.53□□□□□ -1.84
SMARCA1-205ENST00000617310 KRTAP4-7Q9BYR0 210 aa3.53□□□□□ -1.85
SMARCA1-205ENST00000617310 DSTQ03001 7570 aaKnown RBP3.48□□□□□ -1.85
SMARCA1-205ENST00000617310 FCGBPQ9Y6R7 5405 aaPredicted RBP3.44□□□□□ -1.86
SMARCA1-205ENST00000617310 KRTAP19-3Q7Z4W3 81 aa3.42□□□□□ -1.86
SMARCA1-205ENST00000617310 KRTAP19-6Q3LI70 58 aa3.4□□□□□ -1.86
SMARCA1-205ENST00000617310 KRTAP12-4P60329 112 aa3.4□□□□□ -1.87
SMARCA1-205ENST00000617310 MT1EP04732 61 aa3.39□□□□□ -1.87
SMARCA1-205ENST00000617310 MACF1Q9UPN3 7388 aaKnown RBP3.39□□□□□ -1.87
SMARCA1-205ENST00000617310 MT1LQ93083 61 aa3.38□□□□□ -1.87
SMARCA1-205ENST00000617310 KRTAP9-6A0A140TA67 174 aa3.38□□□□□ -1.87
SMARCA1-205ENST00000617310 KRTAP19-4Q3LI73 84 aa3.37□□□□□ -1.87
SMARCA1-205ENST00000617310 KRTAP4-3Q9BYR4 195 aa3.35□□□□□ -1.87
SMARCA1-205ENST00000617310 SPRR5A0A1B0GTR4 108 aa3.33□□□□□ -1.88
SMARCA1-205ENST00000617310 LCE2DQ5TA82 110 aaPredicted RBP3.3□□□□□ -1.88
SMARCA1-205ENST00000617310 MT4P47944 62 aa3.3□□□□□ -1.88
SMARCA1-205ENST00000617310 LOC100996750A0A140TA64 210 aa3.28□□□□□ -1.88
SMARCA1-205ENST00000617310 MT1MQ8N339 61 aa3.28□□□□□ -1.88
SMARCA1-205ENST00000617310 SSPOA2VEC9 5147 aa3.25□□□□□ -1.89
SMARCA1-205ENST00000617310 KRTAP19-7Q3SYF9 63 aa3.23□□□□□ -1.89
SMARCA1-205ENST00000617310 KRTAP9-7A8MTY7 169 aa3.21□□□□□ -1.9
SMARCA1-205ENST00000617310 LCE3DQ9BYE3 92 aa3.19□□□□□ -1.9
SMARCA1-205ENST00000617310 MUC12Q9UKN1 5478 aa3.13□□□□□ -1.91
SMARCA1-205ENST00000617310 MDN1Q9NU22 5596 aa3.13□□□□□ -1.91
SMARCA1-205ENST00000617310 KRTAP9-1A8MXZ3 250 aaPredicted RBP3.12□□□□□ -1.91
SMARCA1-205ENST00000617310 LCE3EQ5T5B0 92 aa3.1□□□□□ -1.91
SMARCA1-205ENST00000617310 KRTAP9-6A8MVA2 160 aa3.07□□□□□ -1.92
SMARCA1-205ENST00000617310 MT3P25713 68 aa3.05□□□□□ -1.92
SMARCA1-205ENST00000617310 KRTAP4-9Q9BYQ8 210 aa3.03□□□□□ -1.92
SMARCA1-205ENST00000617310 LCE1DQ5T752 114 aa3.03□□□□□ -1.92
SMARCA1-205ENST00000617310 KRTAP20-1Q3LI63 56 aa3.02□□□□□ -1.93
SMARCA1-205ENST00000617310 LCE1BQ5T7P3 118 aa3.02□□□□□ -1.93
SMARCA1-205ENST00000617310 KRTAP6-3Q3LI67 103 aa3.02□□□□□ -1.93
SMARCA1-205ENST00000617310 LCE1AQ5T7P2 110 aa3□□□□□ -1.93
SMARCA1-205ENST00000617310 MT1AP04731 61 aa2.95□□□□□ -1.94
SMARCA1-205ENST00000617310 LCE5AQ5TCM9 118 aa2.93□□□□□ -1.94
SMARCA1-205ENST00000617310 KRTAP2-3P0C7H8 128 aa2.91□□□□□ -1.94
SMARCA1-205ENST00000617310 KRTAP2-4Q9BYR9 128 aa2.91□□□□□ -1.94
SMARCA1-205ENST00000617310 KRTAP2-1Q9BYU5 128 aa2.91□□□□□ -1.94
SMARCA1-205ENST00000617310 KRTAP6-1Q3LI64 71 aa2.89□□□□□ -1.95
SMARCA1-205ENST00000617310 NEBP20929 6669 aa2.86□□□□□ -1.95
SMARCA1-205ENST00000617310 MUC19Q7Z5P9 8384 aa2.85□□□□□ -1.95
SMARCA1-205ENST00000617310 KRTAP6-2Q3LI66 62 aa2.85□□□□□ -1.95
SMARCA1-205ENST00000617310 KRTAP2-2Q9BYT5 123 aa2.84□□□□□ -1.95
SMARCA1-205ENST00000617310 GPR98Q8WXG9 6306 aa2.84□□□□□ -1.96
SMARCA1-205ENST00000617310 PRM1P04553 51 aa2.83□□□□□ -1.96
SMARCA1-205ENST00000617310 LCE4AQ5TA78 99 aa2.72□□□□□ -1.97
SMARCA1-205ENST00000617310 KRTAP5-9P26371 169 aa2.71□□□□□ -1.98
SMARCA1-205ENST00000617310 KRTAP9-4Q9BYQ2 154 aa2.71□□□□□ -1.98
SMARCA1-205ENST00000617310 KRTAP4-6Q9BYQ5 205 aa2.61□□□□□ -1.99
SMARCA1-205ENST00000617310 LCE1CQ5T751 118 aa2.51□□□□□ -2.01
SMARCA1-205ENST00000617310 LCE1EQ5T753 118 aa2.51□□□□□ -2.01
SMARCA1-205ENST00000617310 LCE1FQ5T754 118 aa2.51□□□□□ -2.01
SMARCA1-205ENST00000617310 KRTAP5-5Q701N2 237 aaPredicted RBP2.51□□□□□ -2.01
SMARCA1-205ENST00000617310 MUC5ACP98088 5654 aa2.46□□□□□ -2.02
SMARCA1-205ENST00000617310 KRTAP20-2Q3LI61 65 aa2.45□□□□□ -2.02
SMARCA1-205ENST00000617310 HMCN1Q96RW7 5635 aa2.42□□□□□ -2.02
SMARCA1-205ENST00000617310 KRTAP9-9Q9BYP9 154 aa2.39□□□□□ -2.03
SMARCA1-205ENST00000617310 KRTAP5-4Q6L8H1 288 aa2.35□□□□□ -2.03
SMARCA1-205ENST00000617310 AHNAK2Q8IVF2 5795 aa2.27□□□□□ -2.05
SMARCA1-205ENST00000617310 KRTAP4-12Q9BQ66 201 aa2.25□□□□□ -2.05
SMARCA1-205ENST00000617310 KRTAP4-2Q9BYR5 136 aa2.25□□□□□ -2.05
SMARCA1-205ENST00000617310 KRTAP4-11Q9BYQ6 195 aa2.24□□□□□ -2.05
SMARCA1-205ENST00000617310 KRTAP4-4Q9BYR3 166 aa2.22□□□□□ -2.05
SMARCA1-205ENST00000617310 KRTAP5-2Q701N4 177 aa2.17□□□□□ -2.06
SMARCA1-205ENST00000617310 KRTAP5-3Q6L8H2 238 aa2.13□□□□□ -2.07
SMARCA1-205ENST00000617310 KRTAP5-8O75690 187 aa1.96□□□□□ -2.1
SMARCA1-205ENST00000617310 AHNAKQ09666 5890 aaKnown RBP1.91□□□□□ -2.1
SMARCA1-205ENST00000617310 KRTAP5-7Q6L8G8 165 aa1.87□□□□□ -2.11
SMARCA1-205ENST00000617310 KRTAP5-10Q6L8G5 202 aa1.86□□□□□ -2.11
SMARCA1-205ENST00000617310 MUC5BQ9HC84 5762 aaPredicted RBP1.84□□□□□ -2.11
SMARCA1-205ENST00000617310 KRTAP5-1Q6L8H4 278 aa1.83□□□□□ -2.12
SMARCA1-205ENST00000617310 KRTAP5-6Q6L8G9 129 aaPredicted RBP1.73□□□□□ -2.13
SMARCA1-205ENST00000617310 PHGR1C9JFL3 82 aa1.63□□□□□ -2.15
SMARCA1-205ENST00000617310 KRTAP21-2Q3LI59 83 aa1.57□□□□□ -2.16
SMARCA1-205ENST00000617310 KRTAP5-11Q6L8G4 156 aa1.55□□□□□ -2.16
SMARCA1-205ENST00000617310 KRTAP21-1Q3LI58 79 aa1.44□□□□□ -2.18
SMARCA1-205ENST00000617310 MUC16Q8WXI7 14507 aa1.03□□□□□ -2.24
Retrieved 78 of 20,778 RNA–protein pairs in 91.8 ms