RNA–Protein interactions for RNA: ENST00000617054.1

NEK3-207, Transcript of NIMA related kinase 3, humanhuman

TSL 5

Gene NEK3, Length 3,256 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEK3-207ENST00000617054 KRTAP4-8A0A0G2JLE6 195 aa3.05□□□□□ -1.92
NEK3-207ENST00000617054 PP632Q6XCG6 107 aa3.05□□□□□ -1.92
NEK3-207ENST00000617054 KRTAP10-12P60413 245 aa3.05□□□□□ -1.92
NEK3-207ENST00000617054 FCGBPQ9Y6R7 5405 aaPredicted RBP3.03□□□□□ -1.92
NEK3-207ENST00000617054 KRTAP2-2Q9BYT5 123 aa2.97□□□□□ -1.93
NEK3-207ENST00000617054 KRTAP19-6Q3LI70 58 aa2.96□□□□□ -1.94
NEK3-207ENST00000617054 KRTAP8-1Q8IUC2 63 aa2.96□□□□□ -1.94
NEK3-207ENST00000617054 KRTAP12-3P60328 96 aa2.95□□□□□ -1.94
NEK3-207ENST00000617054 KRTAP19-5Q3LI72 72 aa2.95□□□□□ -1.94
NEK3-207ENST00000617054 MUC12Q9UKN1 5478 aa2.93□□□□□ -1.94
NEK3-207ENST00000617054 MACF1Q9UPN3 7388 aaKnown RBP2.92□□□□□ -1.94
NEK3-207ENST00000617054 SYNE2Q8WXH0 6885 aaKnown RBP2.91□□□□□ -1.94
NEK3-207ENST00000617054 KRTAP19-7Q3SYF9 63 aa2.87□□□□□ -1.95
NEK3-207ENST00000617054 LCE1DQ5T752 114 aa2.85□□□□□ -1.95
NEK3-207ENST00000617054 LCE1EQ5T753 118 aa2.84□□□□□ -1.95
NEK3-207ENST00000617054 KRTAP4-7Q9BYR0 210 aa2.82□□□□□ -1.96
NEK3-207ENST00000617054 CRCT1Q9UGL9 99 aa2.81□□□□□ -1.96
NEK3-207ENST00000617054 MDN1Q9NU22 5596 aa2.81□□□□□ -1.96
NEK3-207ENST00000617054 DSTQ03001 7570 aaKnown RBP2.8□□□□□ -1.96
NEK3-207ENST00000617054 SPRR5A0A1B0GTR4 108 aa2.8□□□□□ -1.96
NEK3-207ENST00000617054 MT1EP04732 61 aa2.79□□□□□ -1.96
NEK3-207ENST00000617054 LCE3DQ9BYE3 92 aa2.78□□□□□ -1.96
NEK3-207ENST00000617054 MT1LQ93083 61 aa2.75□□□□□ -1.97
NEK3-207ENST00000617054 KRTAP4-11Q9BYQ6 195 aa2.75□□□□□ -1.97
NEK3-207ENST00000617054 SPRR2FQ96RM1 72 aa2.74□□□□□ -1.97
NEK3-207ENST00000617054 KRTAP4-3Q9BYR4 195 aa2.71□□□□□ -1.98
NEK3-207ENST00000617054 KRTAP9-6A8MVA2 160 aa2.69□□□□□ -1.98
NEK3-207ENST00000617054 MT3P25713 68 aa2.67□□□□□ -1.98
NEK3-207ENST00000617054 KRTAP4-9Q9BYQ8 210 aa2.66□□□□□ -1.98
NEK3-207ENST00000617054 KRTAP19-3Q7Z4W3 81 aa2.66□□□□□ -1.98
NEK3-207ENST00000617054 MT1MQ8N339 61 aa2.62□□□□□ -1.99
NEK3-207ENST00000617054 MT1GP13640 62 aa2.61□□□□□ -1.99
NEK3-207ENST00000617054 KRTAP4-2Q9BYR5 136 aa2.6□□□□□ -1.99
NEK3-207ENST00000617054 KRTAP5-9P26371 169 aa2.57□□□□□ -2
NEK3-207ENST00000617054 SPRR2EP22531 72 aa2.55□□□□□ -2
NEK3-207ENST00000617054 SPRR2BP35325 72 aa2.55□□□□□ -2
NEK3-207ENST00000617054 SPRR2AP35326 72 aa2.55□□□□□ -2
NEK3-207ENST00000617054 MUC19Q7Z5P9 8384 aa2.55□□□□□ -2
NEK3-207ENST00000617054 OBSCNQ5VST9 7968 aa2.53□□□□□ -2
NEK3-207ENST00000617054 SYNE1Q8NF91 8797 aaKnown RBP2.5□□□□□ -2.01
NEK3-207ENST00000617054 KRTAP6-3Q3LI67 103 aa2.49□□□□□ -2.01
NEK3-207ENST00000617054 KRTAP5-3Q6L8H2 238 aa2.47□□□□□ -2.01
NEK3-207ENST00000617054 HMCN1Q96RW7 5635 aa2.47□□□□□ -2.01
NEK3-207ENST00000617054 SPRR2DP22532 72 aa2.44□□□□□ -2.02
NEK3-207ENST00000617054 NEBP20929 6669 aa2.41□□□□□ -2.02
NEK3-207ENST00000617054 KRTAP2-3P0C7H8 128 aa2.41□□□□□ -2.02
NEK3-207ENST00000617054 KRTAP2-4Q9BYR9 128 aa2.41□□□□□ -2.02
NEK3-207ENST00000617054 KRTAP2-1Q9BYU5 128 aa2.41□□□□□ -2.02
NEK3-207ENST00000617054 KRTAP6-1Q3LI64 71 aa2.36□□□□□ -2.03
NEK3-207ENST00000617054 INE1O15225 51 aa2.34□□□□□ -2.04
NEK3-207ENST00000617054 KRTAP5-5Q701N2 237 aaPredicted RBP2.33□□□□□ -2.04
NEK3-207ENST00000617054 MT1AP04731 61 aa2.29□□□□□ -2.04
NEK3-207ENST00000617054 MT4P47944 62 aa2.21□□□□□ -2.06
NEK3-207ENST00000617054 KRTAP6-2Q3LI66 62 aa2.16□□□□□ -2.06
NEK3-207ENST00000617054 KRTAP5-4Q6L8H1 288 aa2.16□□□□□ -2.06
NEK3-207ENST00000617054 GPR98Q8WXG9 6306 aa2.15□□□□□ -2.07
NEK3-207ENST00000617054 KRTAP12-4P60329 112 aa2.15□□□□□ -2.07
NEK3-207ENST00000617054 KRTAP20-1Q3LI63 56 aa2.13□□□□□ -2.07
NEK3-207ENST00000617054 MUC5BQ9HC84 5762 aaPredicted RBP2.12□□□□□ -2.07
NEK3-207ENST00000617054 KRTAP20-2Q3LI61 65 aa2.07□□□□□ -2.08
NEK3-207ENST00000617054 KRTAP5-11Q6L8G4 156 aa2□□□□□ -2.09
NEK3-207ENST00000617054 KRTAP5-2Q701N4 177 aa1.96□□□□□ -2.1
NEK3-207ENST00000617054 PRM1P04553 51 aa1.88□□□□□ -2.11
NEK3-207ENST00000617054 AHNAK2Q8IVF2 5795 aa1.8□□□□□ -2.12
NEK3-207ENST00000617054 MUC5ACP98088 5654 aa1.79□□□□□ -2.12
NEK3-207ENST00000617054 LCE1BQ5T7P3 118 aa1.79□□□□□ -2.12
NEK3-207ENST00000617054 AHNAKQ09666 5890 aaKnown RBP1.78□□□□□ -2.12
NEK3-207ENST00000617054 KRTAP5-1Q6L8H4 278 aa1.76□□□□□ -2.13
NEK3-207ENST00000617054 KRTAP5-6Q6L8G9 129 aaPredicted RBP1.74□□□□□ -2.13
NEK3-207ENST00000617054 LCE1CQ5T751 118 aa1.72□□□□□ -2.13
NEK3-207ENST00000617054 KRTAP5-8O75690 187 aa1.71□□□□□ -2.14
NEK3-207ENST00000617054 KRTAP5-10Q6L8G5 202 aa1.65□□□□□ -2.15
NEK3-207ENST00000617054 KRTAP5-7Q6L8G8 165 aa1.57□□□□□ -2.16
NEK3-207ENST00000617054 KRTAP4-4Q9BYR3 166 aa1.53□□□□□ -2.16
NEK3-207ENST00000617054 KRTAP21-2Q3LI59 83 aa1.51□□□□□ -2.17
NEK3-207ENST00000617054 PHGR1C9JFL3 82 aa1.25□□□□□ -2.21
NEK3-207ENST00000617054 KRTAP21-1Q3LI58 79 aa1.14□□□□□ -2.23
NEK3-207ENST00000617054 MUC16Q8WXI7 14507 aa0.8□□□□□ -2.28
Retrieved 78 of 20,778 RNA–protein pairs in 68.5 ms