RNA–Protein interactions for RNA: ENST00000612417.4

CDH1-213, Transcript of cadherin 1, humanhuman

TSL 5 BASIC

Gene CDH1, Length 2,068 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH1-213ENST00000612417 MT1LQ93083 61 aa5.09□□□□□ -1.59
CDH1-213ENST00000612417 SPRR2FQ96RM1 72 aa5.05□□□□□ -1.6
CDH1-213ENST00000612417 KRTAP4-7Q9BYR0 210 aa5.04□□□□□ -1.6
CDH1-213ENST00000612417 MUC12Q9UKN1 5478 aa5.04□□□□□ -1.6
CDH1-213ENST00000612417 KRTAP2-3P0C7H8 128 aa5□□□□□ -1.61
CDH1-213ENST00000612417 KRTAP2-4Q9BYR9 128 aa5□□□□□ -1.61
CDH1-213ENST00000612417 KRTAP2-1Q9BYU5 128 aa5□□□□□ -1.61
CDH1-213ENST00000612417 KRTAP9-6A0A140TA67 174 aa4.98□□□□□ -1.61
CDH1-213ENST00000612417 SYNE2Q8WXH0 6885 aaKnown RBP4.96□□□□□ -1.61
CDH1-213ENST00000612417 KRTAP19-3Q7Z4W3 81 aa4.94□□□□□ -1.62
CDH1-213ENST00000612417 MT1GP13640 62 aa4.9□□□□□ -1.62
CDH1-213ENST00000612417 KRTAP9-1A8MXZ3 250 aaPredicted RBP4.87□□□□□ -1.63
CDH1-213ENST00000612417 KRTAP5-9P26371 169 aa4.87□□□□□ -1.63
CDH1-213ENST00000612417 MT1MQ8N339 61 aa4.86□□□□□ -1.63
CDH1-213ENST00000612417 LCE5AQ5TCM9 118 aa4.83□□□□□ -1.64
CDH1-213ENST00000612417 KRTAP4-3Q9BYR4 195 aa4.82□□□□□ -1.64
CDH1-213ENST00000612417 MDN1Q9NU22 5596 aa4.81□□□□□ -1.64
CDH1-213ENST00000612417 KRTAP6-3Q3LI67 103 aa4.77□□□□□ -1.65
CDH1-213ENST00000612417 LCE1AQ5T7P2 110 aa4.77□□□□□ -1.65
CDH1-213ENST00000612417 SPRR2EP22531 72 aa4.76□□□□□ -1.65
CDH1-213ENST00000612417 SPRR2BP35325 72 aa4.76□□□□□ -1.65
CDH1-213ENST00000612417 SPRR2AP35326 72 aa4.76□□□□□ -1.65
CDH1-213ENST00000612417 LOC100996750A0A140TA64 210 aa4.71□□□□□ -1.66
CDH1-213ENST00000612417 DSTQ03001 7570 aaKnown RBP4.65□□□□□ -1.67
CDH1-213ENST00000612417 KRTAP9-7A8MTY7 169 aa4.58□□□□□ -1.68
CDH1-213ENST00000612417 SPRR2DP22532 72 aa4.58□□□□□ -1.68
CDH1-213ENST00000612417 NEBP20929 6669 aa4.41□□□□□ -1.7
CDH1-213ENST00000612417 LCE3BQ5TA77 95 aa4.39□□□□□ -1.71
CDH1-213ENST00000612417 KRTAP12-4P60329 112 aa4.35□□□□□ -1.71
CDH1-213ENST00000612417 KRTAP5-5Q701N2 237 aaPredicted RBP4.33□□□□□ -1.72
CDH1-213ENST00000612417 MT1AP04731 61 aa4.3□□□□□ -1.72
CDH1-213ENST00000612417 KRTAP6-1Q3LI64 71 aa4.3□□□□□ -1.72
CDH1-213ENST00000612417 KRTAP2-2Q9BYT5 123 aa4.26□□□□□ -1.73
CDH1-213ENST00000612417 KRTAP4-9Q9BYQ8 210 aa4.19□□□□□ -1.74
CDH1-213ENST00000612417 SYNE1Q8NF91 8797 aaKnown RBP4.16□□□□□ -1.74
CDH1-213ENST00000612417 LCE3DQ9BYE3 92 aa4.12□□□□□ -1.75
CDH1-213ENST00000612417 KRTAP20-1Q3LI63 56 aa4.09□□□□□ -1.76
CDH1-213ENST00000612417 KRTAP9-4Q9BYQ2 154 aa4.09□□□□□ -1.76
CDH1-213ENST00000612417 KRTAP5-4Q6L8H1 288 aa4.08□□□□□ -1.76
CDH1-213ENST00000612417 LCE3EQ5T5B0 92 aa4.06□□□□□ -1.76
CDH1-213ENST00000612417 LCE4AQ5TA78 99 aa4.02□□□□□ -1.77
CDH1-213ENST00000612417 MT4P47944 62 aa4.01□□□□□ -1.77
CDH1-213ENST00000612417 KRTAP4-6Q9BYQ5 205 aa3.96□□□□□ -1.78
CDH1-213ENST00000612417 KRTAP6-2Q3LI66 62 aa3.95□□□□□ -1.78
CDH1-213ENST00000612417 MT3P25713 68 aa3.91□□□□□ -1.78
CDH1-213ENST00000612417 LCE1DQ5T752 114 aa3.88□□□□□ -1.79
CDH1-213ENST00000612417 HMCN1Q96RW7 5635 aa3.87□□□□□ -1.79
CDH1-213ENST00000612417 PRM1P04553 51 aa3.86□□□□□ -1.79
CDH1-213ENST00000612417 KRTAP20-2Q3LI61 65 aa3.85□□□□□ -1.79
CDH1-213ENST00000612417 KRTAP5-2Q701N4 177 aa3.72□□□□□ -1.81
CDH1-213ENST00000612417 LCE1EQ5T753 118 aa3.71□□□□□ -1.82
CDH1-213ENST00000612417 KRTAP5-3Q6L8H2 238 aa3.68□□□□□ -1.82
CDH1-213ENST00000612417 OBSCNQ5VST9 7968 aa3.63□□□□□ -1.83
CDH1-213ENST00000612417 AHNAK2Q8IVF2 5795 aa3.38□□□□□ -1.87
CDH1-213ENST00000612417 KRTAP4-11Q9BYQ6 195 aa3.33□□□□□ -1.88
CDH1-213ENST00000612417 LCE1FQ5T754 118 aa3.32□□□□□ -1.88
CDH1-213ENST00000612417 KRTAP9-9Q9BYP9 154 aa3.28□□□□□ -1.89
CDH1-213ENST00000612417 LCE1BQ5T7P3 118 aa3.23□□□□□ -1.89
CDH1-213ENST00000612417 KRTAP5-1Q6L8H4 278 aa3.22□□□□□ -1.89
CDH1-213ENST00000612417 MUC5ACP98088 5654 aa3.19□□□□□ -1.9
CDH1-213ENST00000612417 KRTAP5-8O75690 187 aa3.18□□□□□ -1.9
CDH1-213ENST00000612417 KRTAP4-12Q9BQ66 201 aa3.15□□□□□ -1.91
CDH1-213ENST00000612417 KRTAP5-10Q6L8G5 202 aa3.13□□□□□ -1.91
CDH1-213ENST00000612417 KRTAP4-2Q9BYR5 136 aa3.12□□□□□ -1.91
CDH1-213ENST00000612417 LCE1CQ5T751 118 aa3.11□□□□□ -1.91
CDH1-213ENST00000612417 KRTAP5-7Q6L8G8 165 aa3.05□□□□□ -1.92
CDH1-213ENST00000612417 GPR98Q8WXG9 6306 aa2.95□□□□□ -1.94
CDH1-213ENST00000612417 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.89□□□□□ -1.95
CDH1-213ENST00000612417 MUC5BQ9HC84 5762 aaPredicted RBP2.8□□□□□ -1.96
CDH1-213ENST00000612417 KRTAP21-2Q3LI59 83 aa2.8□□□□□ -1.96
CDH1-213ENST00000612417 KRTAP5-11Q6L8G4 156 aa2.73□□□□□ -1.97
CDH1-213ENST00000612417 KRTAP21-1Q3LI58 79 aa2.61□□□□□ -1.99
CDH1-213ENST00000612417 KRTAP4-4Q9BYR3 166 aa2.55□□□□□ -2
CDH1-213ENST00000612417 AHNAKQ09666 5890 aaKnown RBP2.5□□□□□ -2.01
CDH1-213ENST00000612417 PHGR1C9JFL3 82 aa2.35□□□□□ -2.03
CDH1-213ENST00000612417 MUC19Q7Z5P9 8384 aa2.22□□□□□ -2.05
CDH1-213ENST00000612417 MUC16Q8WXI7 14507 aa1.55□□□□□ -2.16
Retrieved 77 of 20,778 RNA–protein pairs in 60.8 ms