RNA–Protein interactions for RNA: ENST00000611614.4

COPS7B-223, Transcript of COP9 signalosome subunit 7B, human

TSL 3 BASIC

Gene COPS7B, Length 2,468 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
COPS7B-223	ENST00000611614	KRTAP9-1	A8MXZ3	250 aa	Predicted RBP	4.92	□□□□□ -1.62
COPS7B-223	ENST00000611614	MT1E	P04732	61 aa		4.92	□□□□□ -1.62
COPS7B-223	ENST00000611614	SPRR2F	Q96RM1	72 aa		4.88	□□□□□ -1.63
COPS7B-223	ENST00000611614	KRTAP19-4	Q3LI73	84 aa		4.87	□□□□□ -1.63
COPS7B-223	ENST00000611614	MT1L	Q93083	61 aa		4.82	□□□□□ -1.64
COPS7B-223	ENST00000611614	SYNE2	Q8WXH0	6885 aa	Known RBP	4.8	□□□□□ -1.64
COPS7B-223	ENST00000611614	KRTAP9-6	A8MVA2	160 aa		4.79	□□□□□ -1.64
COPS7B-223	ENST00000611614	KRTAP4-12	Q9BQ66	201 aa		4.78	□□□□□ -1.64
COPS7B-223	ENST00000611614	KRTAP4-7	Q9BYR0	210 aa		4.77	□□□□□ -1.65
COPS7B-223	ENST00000611614	KRTAP5-9	P26371	169 aa		4.76	□□□□□ -1.65
COPS7B-223	ENST00000611614	KRTAP2-3	P0C7H8	128 aa		4.75	□□□□□ -1.65
COPS7B-223	ENST00000611614	KRTAP2-4	Q9BYR9	128 aa		4.75	□□□□□ -1.65
COPS7B-223	ENST00000611614	KRTAP2-1	Q9BYU5	128 aa		4.75	□□□□□ -1.65
COPS7B-223	ENST00000611614	KRTAP19-3	Q7Z4W3	81 aa		4.75	□□□□□ -1.65
COPS7B-223	ENST00000611614	MT1G	P13640	62 aa		4.72	□□□□□ -1.65
COPS7B-223	ENST00000611614	KRTAP6-3	Q3LI67	103 aa		4.7	□□□□□ -1.66
COPS7B-223	ENST00000611614	LCE3B	Q5TA77	95 aa		4.69	□□□□□ -1.66
COPS7B-223	ENST00000611614	MUC12	Q9UKN1	5478 aa		4.69	□□□□□ -1.66
COPS7B-223	ENST00000611614	KRTAP9-9	Q9BYP9	154 aa		4.67	□□□□□ -1.66
COPS7B-223	ENST00000611614	KRTAP9-4	Q9BYQ2	154 aa		4.67	□□□□□ -1.66
COPS7B-223	ENST00000611614	LCE5A	Q5TCM9	118 aa		4.65	□□□□□ -1.67
COPS7B-223	ENST00000611614	MT1M	Q8N339	61 aa		4.64	□□□□□ -1.67
COPS7B-223	ENST00000611614	SPRR2E	P22531	72 aa		4.62	□□□□□ -1.67
COPS7B-223	ENST00000611614	SPRR2B	P35325	72 aa		4.62	□□□□□ -1.67
COPS7B-223	ENST00000611614	SPRR2A	P35326	72 aa		4.62	□□□□□ -1.67
COPS7B-223	ENST00000611614	LCE1A	Q5T7P2	110 aa		4.61	□□□□□ -1.67
COPS7B-223	ENST00000611614	LCE4A	Q5TA78	99 aa		4.58	□□□□□ -1.68
COPS7B-223	ENST00000611614	KRTAP9-7	A8MTY7	169 aa		4.55	□□□□□ -1.68
COPS7B-223	ENST00000611614	KRTAP4-3	Q9BYR4	195 aa		4.53	□□□□□ -1.68
COPS7B-223	ENST00000611614	MDN1	Q9NU22	5596 aa		4.52	□□□□□ -1.69
COPS7B-223	ENST00000611614	KRTAP2-2	Q9BYT5	123 aa		4.51	□□□□□ -1.69
COPS7B-223	ENST00000611614	SPRR2D	P22532	72 aa		4.46	□□□□□ -1.7
COPS7B-223	ENST00000611614	DST	Q03001	7570 aa	Known RBP	4.39	□□□□□ -1.71
COPS7B-223	ENST00000611614	LCE1D	Q5T752	114 aa		4.37	□□□□□ -1.71
COPS7B-223	ENST00000611614	NEB	P20929	6669 aa		4.32	□□□□□ -1.72
COPS7B-223	ENST00000611614	KRTAP4-9	Q9BYQ8	210 aa		4.22	□□□□□ -1.73
COPS7B-223	ENST00000611614	KRTAP12-4	P60329	112 aa		4.19	□□□□□ -1.74
COPS7B-223	ENST00000611614	KRTAP4-2	Q9BYR5	136 aa		4.18	□□□□□ -1.74
COPS7B-223	ENST00000611614	KRTAP5-5	Q701N2	237 aa	Predicted RBP	4.14	□□□□□ -1.75
COPS7B-223	ENST00000611614	KRTAP4-11	Q9BYQ6	195 aa		4.13	□□□□□ -1.75
COPS7B-223	ENST00000611614	MT1A	P04731	61 aa		4.11	□□□□□ -1.75
COPS7B-223	ENST00000611614	LCE1E	Q5T753	118 aa		4.09	□□□□□ -1.75
COPS7B-223	ENST00000611614	KRTAP6-1	Q3LI64	71 aa		4.06	□□□□□ -1.76
COPS7B-223	ENST00000611614	KRTAP20-1	Q3LI63	56 aa		4.05	□□□□□ -1.76
COPS7B-223	ENST00000611614	LCE1F	Q5T754	118 aa		4.05	□□□□□ -1.76
COPS7B-223	ENST00000611614	KRTAP5-4	Q6L8H1	288 aa		3.96	□□□□□ -1.78
COPS7B-223	ENST00000611614	SYNE1	Q8NF91	8797 aa	Known RBP	3.94	□□□□□ -1.78
COPS7B-223	ENST00000611614	LCE3D	Q9BYE3	92 aa		3.88	□□□□□ -1.79
COPS7B-223	ENST00000611614	MT4	P47944	62 aa		3.87	□□□□□ -1.79
COPS7B-223	ENST00000611614	LCE3E	Q5T5B0	92 aa		3.86	□□□□□ -1.79
COPS7B-223	ENST00000611614	MT3	P25713	68 aa		3.76	□□□□□ -1.81
COPS7B-223	ENST00000611614	KRTAP6-2	Q3LI66	62 aa		3.76	□□□□□ -1.81
COPS7B-223	ENST00000611614	KRTAP20-2	Q3LI61	65 aa		3.73	□□□□□ -1.81
COPS7B-223	ENST00000611614	PRM1	P04553	51 aa		3.72	□□□□□ -1.81
COPS7B-223	ENST00000611614	HMCN1	Q96RW7	5635 aa		3.65	□□□□□ -1.82
COPS7B-223	ENST00000611614	KRTAP5-3	Q6L8H2	238 aa		3.61	□□□□□ -1.83
COPS7B-223	ENST00000611614	KRTAP5-2	Q701N4	177 aa		3.59	□□□□□ -1.84
COPS7B-223	ENST00000611614	OBSCN	Q5VST9	7968 aa		3.45	□□□□□ -1.86
COPS7B-223	ENST00000611614	AHNAK2	Q8IVF2	5795 aa		3.2	□□□□□ -1.9
COPS7B-223	ENST00000611614	GPR98	Q8WXG9	6306 aa		3.19	□□□□□ -1.9
COPS7B-223	ENST00000611614	KRTAP5-1	Q6L8H4	278 aa		3.11	□□□□□ -1.91
COPS7B-223	ENST00000611614	KRTAP5-8	O75690	187 aa		3.1	□□□□□ -1.91
COPS7B-223	ENST00000611614	KRTAP5-10	Q6L8G5	202 aa		3.1	□□□□□ -1.91
COPS7B-223	ENST00000611614	LCE1B	Q5T7P3	118 aa		3.08	□□□□□ -1.92
COPS7B-223	ENST00000611614	MUC5AC	P98088	5654 aa		3.02	□□□□□ -1.93
COPS7B-223	ENST00000611614	LCE1C	Q5T751	118 aa		3.01	□□□□□ -1.93
COPS7B-223	ENST00000611614	KRTAP5-7	Q6L8G8	165 aa		2.98	□□□□□ -1.93
COPS7B-223	ENST00000611614	KRTAP5-11	Q6L8G4	156 aa		2.85	□□□□□ -1.95
COPS7B-223	ENST00000611614	KRTAP5-6	Q6L8G9	129 aa	Predicted RBP	2.8	□□□□□ -1.96
COPS7B-223	ENST00000611614	MUC5B	Q9HC84	5762 aa	Predicted RBP	2.75	□□□□□ -1.97
COPS7B-223	ENST00000611614	MUC19	Q7Z5P9	8384 aa		2.73	□□□□□ -1.97
COPS7B-223	ENST00000611614	KRTAP21-2	Q3LI59	83 aa		2.64	□□□□□ -1.99
COPS7B-223	ENST00000611614	AHNAK	Q09666	5890 aa	Known RBP	2.58	□□□□□ -2
COPS7B-223	ENST00000611614	KRTAP21-1	Q3LI58	79 aa		2.41	□□□□□ -2.02
COPS7B-223	ENST00000611614	KRTAP4-4	Q9BYR3	166 aa		2.37	□□□□□ -2.03
COPS7B-223	ENST00000611614	PHGR1	C9JFL3	82 aa		2.27	□□□□□ -2.05
COPS7B-223	ENST00000611614	MUC16	Q8WXI7	14507 aa		1.44	□□□□□ -2.18

Retrieved 77 of 20,778 RNA–protein pairs in 92.5 ms