RNA–Protein interactions for RNA: ENST00000602574.5

COMMD3-215, Transcript of COMM domain containing 3, humanhuman

TSL 1 (best)

Gene COMMD3, Length 2,290 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COMMD3-215ENST00000602574 KRTAP9-6A8MVA2 160 aa2.98□□□□□ -1.93
COMMD3-215ENST00000602574 MT1XP80297 61 aa2.97□□□□□ -1.93
COMMD3-215ENST00000602574 KRTAP19-5Q3LI72 72 aa2.96□□□□□ -1.94
COMMD3-215ENST00000602574 MT2AP02795 61 aa2.95□□□□□ -1.94
COMMD3-215ENST00000602574 ABCA13Q86UQ4 5058 aa2.94□□□□□ -1.94
COMMD3-215ENST00000602574 MT1BP07438 61 aa2.93□□□□□ -1.94
COMMD3-215ENST00000602574 MT1FP04733 61 aa2.91□□□□□ -1.94
COMMD3-215ENST00000602574 BIRC6Q9NR09 4857 aa2.91□□□□□ -1.94
COMMD3-215ENST00000602574 MT1HP80294 61 aa2.91□□□□□ -1.94
COMMD3-215ENST00000602574 LCE1EQ5T753 118 aa2.89□□□□□ -1.95
COMMD3-215ENST00000602574 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.85□□□□□ -1.95
COMMD3-215ENST00000602574 HERC2O95714 4834 aa2.84□□□□□ -1.95
COMMD3-215ENST00000602574 MUC2Q02817 5179 aa2.78□□□□□ -1.96
COMMD3-215ENST00000602574 HMCN2Q8NDA2 5059 aa2.78□□□□□ -1.96
COMMD3-215ENST00000602574 PCLOQ9Y6V0 5065 aa2.77□□□□□ -1.97
COMMD3-215ENST00000602574 LCE1FQ5T754 118 aa2.75□□□□□ -1.97
COMMD3-215ENST00000602574 PRM1P04553 51 aa2.74□□□□□ -1.97
COMMD3-215ENST00000602574 MT1AP04731 61 aa2.66□□□□□ -1.98
COMMD3-215ENST00000602574 KRTAP5-5Q701N2 237 aaPredicted RBP2.65□□□□□ -1.99
COMMD3-215ENST00000602574 MT1EP04732 61 aa2.65□□□□□ -1.99
COMMD3-215ENST00000602574 KRTAP19-7Q3SYF9 63 aa2.64□□□□□ -1.99
COMMD3-215ENST00000602574 FAT4Q6V0I7 4981 aa2.63□□□□□ -1.99
COMMD3-215ENST00000602574 UBR4Q5T4S7 5183 aa2.63□□□□□ -1.99
COMMD3-215ENST00000602574 RNF213Q63HN8 5207 aa2.63□□□□□ -1.99
COMMD3-215ENST00000602574 MT1LQ93083 61 aa2.62□□□□□ -1.99
COMMD3-215ENST00000602574 MT3P25713 68 aa2.6□□□□□ -1.99
COMMD3-215ENST00000602574 LCE3EQ5T5B0 92 aa2.58□□□□□ -2
COMMD3-215ENST00000602574 KRTAP5-11Q6L8G4 156 aa2.53□□□□□ -2
COMMD3-215ENST00000602574 KRTAP5-9P26371 169 aa2.52□□□□□ -2.01
COMMD3-215ENST00000602574 LCE3DQ9BYE3 92 aa2.51□□□□□ -2.01
COMMD3-215ENST00000602574 MT1GP13640 62 aa2.44□□□□□ -2.02
COMMD3-215ENST00000602574 KRTAP6-2Q3LI66 62 aa2.42□□□□□ -2.02
COMMD3-215ENST00000602574 KRTAP5-4Q6L8H1 288 aa2.42□□□□□ -2.02
COMMD3-215ENST00000602574 SYNE1Q8NF91 8797 aaKnown RBP2.4□□□□□ -2.03
COMMD3-215ENST00000602574 KRTAP5-1Q6L8H4 278 aa2.39□□□□□ -2.03
COMMD3-215ENST00000602574 MT1MQ8N339 61 aa2.39□□□□□ -2.03
COMMD3-215ENST00000602574 KRTAP19-3Q7Z4W3 81 aa2.38□□□□□ -2.03
COMMD3-215ENST00000602574 SPRR2FQ96RM1 72 aa2.38□□□□□ -2.03
COMMD3-215ENST00000602574 KRTAP4-4Q9BYR3 166 aa2.37□□□□□ -2.03
COMMD3-215ENST00000602574 KRTAP19-6Q3LI70 58 aa2.34□□□□□ -2.03
COMMD3-215ENST00000602574 USH2AO75445 5202 aa2.3□□□□□ -2.04
COMMD3-215ENST00000602574 SPRR2AP35326 72 aa2.3□□□□□ -2.04
COMMD3-215ENST00000602574 SPRR2BP35325 72 aa2.26□□□□□ -2.05
COMMD3-215ENST00000602574 KRTAP4-3Q9BYR4 195 aa2.24□□□□□ -2.05
COMMD3-215ENST00000602574 SPRR2DP22532 72 aa2.23□□□□□ -2.05
COMMD3-215ENST00000602574 FSIP2Q5CZC0 6907 aa2.23□□□□□ -2.05
COMMD3-215ENST00000602574 MUC5BQ9HC84 5762 aaPredicted RBP2.22□□□□□ -2.05
COMMD3-215ENST00000602574 KMT2DO14686 5537 aa2.2□□□□□ -2.06
COMMD3-215ENST00000602574 SPRR2EP22531 72 aa2.2□□□□□ -2.06
COMMD3-215ENST00000602574 CRCT1Q9UGL9 99 aa2.17□□□□□ -2.06
COMMD3-215ENST00000602574 KRTAP6-1Q3LI64 71 aa2.16□□□□□ -2.06
COMMD3-215ENST00000602574 SSPOA2VEC9 5147 aa2.15□□□□□ -2.07
COMMD3-215ENST00000602574 KRTAP5-2Q701N4 177 aa2.13□□□□□ -2.07
COMMD3-215ENST00000602574 GPR98Q8WXG9 6306 aa2.01□□□□□ -2.09
COMMD3-215ENST00000602574 FCGBPQ9Y6R7 5405 aaPredicted RBP1.99□□□□□ -2.09
COMMD3-215ENST00000602574 OBSCNQ5VST9 7968 aa1.97□□□□□ -2.09
COMMD3-215ENST00000602574 MUC12Q9UKN1 5478 aa1.97□□□□□ -2.09
COMMD3-215ENST00000602574 MACF1Q9UPN3 7388 aaKnown RBP1.96□□□□□ -2.1
COMMD3-215ENST00000602574 SYNE2Q8WXH0 6885 aaKnown RBP1.95□□□□□ -2.1
COMMD3-215ENST00000602574 LCE1CQ5T751 118 aa1.93□□□□□ -2.1
COMMD3-215ENST00000602574 LCE1BQ5T7P3 118 aa1.93□□□□□ -2.1
COMMD3-215ENST00000602574 KRTAP21-1Q3LI58 79 aa1.93□□□□□ -2.1
COMMD3-215ENST00000602574 DSTQ03001 7570 aaKnown RBP1.91□□□□□ -2.1
COMMD3-215ENST00000602574 KRTAP5-8O75690 187 aa1.91□□□□□ -2.1
COMMD3-215ENST00000602574 MDN1Q9NU22 5596 aa1.85□□□□□ -2.11
COMMD3-215ENST00000602574 KRTAP5-10Q6L8G5 202 aa1.77□□□□□ -2.13
COMMD3-215ENST00000602574 AHNAKQ09666 5890 aaKnown RBP1.63□□□□□ -2.15
COMMD3-215ENST00000602574 NEBP20929 6669 aa1.6□□□□□ -2.15
COMMD3-215ENST00000602574 KRTAP20-2Q3LI61 65 aa1.59□□□□□ -2.16
COMMD3-215ENST00000602574 MUC19Q7Z5P9 8384 aa1.56□□□□□ -2.16
COMMD3-215ENST00000602574 MUC5ACP98088 5654 aa1.52□□□□□ -2.17
COMMD3-215ENST00000602574 KRTAP20-1Q3LI63 56 aa1.5□□□□□ -2.17
COMMD3-215ENST00000602574 MT4P47944 62 aa1.45□□□□□ -2.18
COMMD3-215ENST00000602574 KRTAP21-2Q3LI59 83 aa1.41□□□□□ -2.18
COMMD3-215ENST00000602574 AHNAK2Q8IVF2 5795 aa1.39□□□□□ -2.19
COMMD3-215ENST00000602574 KRTAP5-7Q6L8G8 165 aa1.33□□□□□ -2.2
COMMD3-215ENST00000602574 PHGR1C9JFL3 82 aa1.08□□□□□ -2.24
COMMD3-215ENST00000602574 MUC16Q8WXI7 14507 aa0.94□□□□□ -2.26
Retrieved 78 of 20,778 RNA–protein pairs in 99.5 ms