RNA–Protein interactions for RNA: ENST00000599165.5

LIG1-217, Transcript of DNA ligase 1, humanhuman

TSL 4

Gene LIG1, Length 570 nt, Biotype processed transcript, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-217ENST00000599165 PP632Q6XCG6 107 aa4.26□□□□□ -1.73
LIG1-217ENST00000599165 TMEM258P61165 79 aa4.24□□□□□ -1.73
LIG1-217ENST00000599165 GPR98Q8WXG9 6306 aa4.23□□□□□ -1.73
LIG1-217ENST00000599165 LCE1DQ5T752 114 aa4.2□□□□□ -1.74
LIG1-217ENST00000599165 UQCR11O14957 56 aa4.17□□□□□ -1.74
LIG1-217ENST00000599165 KRTAP4-7Q9BYR0 210 aa4.17□□□□□ -1.74
LIG1-217ENST00000599165 LCE4AQ5TA78 99 aa4.16□□□□□ -1.74
LIG1-217ENST00000599165 HMCN1Q96RW7 5635 aa4.15□□□□□ -1.74
LIG1-217ENST00000599165 KRTAP12-3P60328 96 aa4.15□□□□□ -1.75
LIG1-217ENST00000599165 KRTAP5-4Q6L8H1 288 aa4.15□□□□□ -1.75
LIG1-217ENST00000599165 MT4P47944 62 aa4.13□□□□□ -1.75
LIG1-217ENST00000599165 RPS28P62857 69 aaKnown RBP4.09□□□□□ -1.75
LIG1-217ENST00000599165 MIR22HGQ0VDD5 57 aa4.09□□□□□ -1.75
LIG1-217ENST00000599165 KRTAP4-6Q9BYQ5 205 aa4.06□□□□□ -1.76
LIG1-217ENST00000599165 KRTAP25-1Q3LHN0 102 aa4.04□□□□□ -1.76
LIG1-217ENST00000599165 PSPHP1O15172 72 aa4.03□□□□□ -1.76
LIG1-217ENST00000599165 AHNAK2Q8IVF2 5795 aa4.01□□□□□ -1.77
LIG1-217ENST00000599165 Q1T7F1 81 aa4.01□□□□□ -1.77
LIG1-217ENST00000599165 KRTAP5-5Q701N2 237 aaPredicted RBP4.01□□□□□ -1.77
LIG1-217ENST00000599165 V9GYY9 64 aa3.96□□□□□ -1.78
LIG1-217ENST00000599165 LOC100996750A0A140TA64 210 aa3.94□□□□□ -1.78
LIG1-217ENST00000599165 KRTAP5-10Q6L8G5 202 aa3.93□□□□□ -1.78
LIG1-217ENST00000599165 K7ERS5 55 aa3.92□□□□□ -1.78
LIG1-217ENST00000599165 KRTAP23-1A1A580 65 aa3.9□□□□□ -1.79
LIG1-217ENST00000599165 KRTAP20-2Q3LI61 65 aa3.89□□□□□ -1.79
LIG1-217ENST00000599165 PRO0628Q9UI54 55 aa3.88□□□□□ -1.79
LIG1-217ENST00000599165 KRTAP15-1Q3LI76 137 aa3.87□□□□□ -1.79
LIG1-217ENST00000599165 SYNE1Q8NF91 8797 aaKnown RBP3.86□□□□□ -1.79
LIG1-217ENST00000599165 SPRR5A0A1B0GTR4 108 aa3.85□□□□□ -1.79
LIG1-217ENST00000599165 KRTAP19-4Q3LI73 84 aa3.85□□□□□ -1.79
LIG1-217ENST00000599165 A6NED7 52 aa3.84□□□□□ -1.79
LIG1-217ENST00000599165 LCE3CQ5T5A8 94 aa3.83□□□□□ -1.8
LIG1-217ENST00000599165 KRTAP5-3Q6L8H2 238 aa3.82□□□□□ -1.8
LIG1-217ENST00000599165 BRK1Q8WUW1 75 aa3.79□□□□□ -1.8
LIG1-217ENST00000599165 KRTAP12-4P60329 112 aa3.78□□□□□ -1.8
LIG1-217ENST00000599165 CDC42SE1Q9NRR8 79 aa3.77□□□□□ -1.81
LIG1-217ENST00000599165 KRTAP5-7Q6L8G8 165 aa3.75□□□□□ -1.81
LIG1-217ENST00000599165 ROMO1P60602 79 aa3.74□□□□□ -1.81
LIG1-217ENST00000599165 KRTAP9-6A8MVA2 160 aa3.7□□□□□ -1.82
LIG1-217ENST00000599165 KRTAP6-1Q3LI64 71 aa3.69□□□□□ -1.82
LIG1-217ENST00000599165 MT1AP04731 61 aa3.68□□□□□ -1.82
LIG1-217ENST00000599165 KRTAP5-2Q701N4 177 aa3.65□□□□□ -1.83
LIG1-217ENST00000599165 PMAIP1Q13794 54 aa3.63□□□□□ -1.83
LIG1-217ENST00000599165 KTN1-AS1Q86SY8 53 aa3.59□□□□□ -1.83
LIG1-217ENST00000599165 KRTAP9-4Q9BYQ2 154 aa3.55□□□□□ -1.84
LIG1-217ENST00000599165 KRTAP4-11Q9BYQ6 195 aa3.54□□□□□ -1.84
LIG1-217ENST00000599165 KRTAP6-2Q3LI66 62 aa3.5□□□□□ -1.85
LIG1-217ENST00000599165 KRTAP5-8O75690 187 aa3.46□□□□□ -1.86
LIG1-217ENST00000599165 OBSCNQ5VST9 7968 aa3.39□□□□□ -1.87
LIG1-217ENST00000599165 MT3P25713 68 aa3.33□□□□□ -1.88
LIG1-217ENST00000599165 PRAC1Q96KF2 57 aa3.3□□□□□ -1.88
LIG1-217ENST00000599165 MUC5ACP98088 5654 aa3.29□□□□□ -1.88
LIG1-217ENST00000599165 MUC5BQ9HC84 5762 aaPredicted RBP3.29□□□□□ -1.88
LIG1-217ENST00000599165 AHNAKQ09666 5890 aaKnown RBP3.29□□□□□ -1.88
LIG1-217ENST00000599165 KRTAP5-1Q6L8H4 278 aa3.27□□□□□ -1.89
LIG1-217ENST00000599165 KRTAP9-9Q9BYP9 154 aa3.19□□□□□ -1.9
LIG1-217ENST00000599165 H3BS24 57 aa3.11□□□□□ -1.91
LIG1-217ENST00000599165 LCE1EQ5T753 118 aa3.08□□□□□ -1.92
LIG1-217ENST00000599165 KRTAP4-2Q9BYR5 136 aa2.97□□□□□ -1.93
LIG1-217ENST00000599165 LCE1BQ5T7P3 118 aa2.88□□□□□ -1.95
LIG1-217ENST00000599165 LCE1CQ5T751 118 aa2.86□□□□□ -1.95
LIG1-217ENST00000599165 NDUFAF8A1L188 74 aa2.82□□□□□ -1.96
LIG1-217ENST00000599165 KRTAP4-12Q9BQ66 201 aa2.8□□□□□ -1.96
LIG1-217ENST00000599165 LCE3DQ9BYE3 92 aa2.73□□□□□ -1.97
LIG1-217ENST00000599165 LUZP6Q538Z0 58 aa2.65□□□□□ -1.99
LIG1-217ENST00000599165 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.63□□□□□ -1.99
LIG1-217ENST00000599165 A0A0A0MQY5 61 aa2.61□□□□□ -1.99
LIG1-217ENST00000599165 KRTAP5-11Q6L8G4 156 aa2.61□□□□□ -1.99
LIG1-217ENST00000599165 LCE3EQ5T5B0 92 aa2.56□□□□□ -2
LIG1-217ENST00000599165 LCE1FQ5T754 118 aa2.5□□□□□ -2.01
LIG1-217ENST00000599165 KRTAP21-2Q3LI59 83 aa2.44□□□□□ -2.02
LIG1-217ENST00000599165 INE1O15225 51 aa2.37□□□□□ -2.03
LIG1-217ENST00000599165 PHGR1C9JFL3 82 aa2.26□□□□□ -2.05
LIG1-217ENST00000599165 KRTAP4-4Q9BYR3 166 aa2.22□□□□□ -2.05
LIG1-217ENST00000599165 MUC19Q7Z5P9 8384 aa2.09□□□□□ -2.07
LIG1-217ENST00000599165 PRM1P04553 51 aa1.94□□□□□ -2.1
LIG1-217ENST00000599165 KRTAP21-1Q3LI58 79 aa1.68□□□□□ -2.14
LIG1-217ENST00000599165 MUC16Q8WXI7 14507 aa1.5□□□□□ -2.17
Retrieved 78 of 20,778 RNA–protein pairs in 7.9 ms