RNA–Protein interactions for RNA: ENST00000598355.1

TRIM28-213, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 714 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-213ENST00000598355 PSPHP1O15172 72 aa5.74□□□□□ -1.49
TRIM28-213ENST00000598355 PP632Q6XCG6 107 aa5.72□□□□□ -1.49
TRIM28-213ENST00000598355 MT1MQ8N339 61 aa5.72□□□□□ -1.49
TRIM28-213ENST00000598355 KRTAP25-1Q3LHN0 102 aa5.65□□□□□ -1.5
TRIM28-213ENST00000598355 K7ERS5 55 aa5.64□□□□□ -1.51
TRIM28-213ENST00000598355 KRTAP12-3P60328 96 aa5.62□□□□□ -1.51
TRIM28-213ENST00000598355 RPS28P62857 69 aaKnown RBP5.61□□□□□ -1.51
TRIM28-213ENST00000598355 PCP4P48539 62 aa5.59□□□□□ -1.51
TRIM28-213ENST00000598355 A6NED7 52 aa5.55□□□□□ -1.52
TRIM28-213ENST00000598355 KRTAP4-3Q9BYR4 195 aa5.54□□□□□ -1.52
TRIM28-213ENST00000598355 KRTAP23-1A1A580 65 aa5.49□□□□□ -1.53
TRIM28-213ENST00000598355 KRTAP4-9Q9BYQ8 210 aa5.46□□□□□ -1.54
TRIM28-213ENST00000598355 LCE4AQ5TA78 99 aa5.45□□□□□ -1.54
TRIM28-213ENST00000598355 KRTAP4-7Q9BYR0 210 aa5.45□□□□□ -1.54
TRIM28-213ENST00000598355 KRTAP5-4Q6L8H1 288 aa5.43□□□□□ -1.54
TRIM28-213ENST00000598355 LCE1DQ5T752 114 aa5.41□□□□□ -1.54
TRIM28-213ENST00000598355 CDC42SE1Q9NRR8 79 aa5.39□□□□□ -1.55
TRIM28-213ENST00000598355 KRTAP19-4Q3LI73 84 aa5.37□□□□□ -1.55
TRIM28-213ENST00000598355 ROMO1P60602 79 aa5.32□□□□□ -1.56
TRIM28-213ENST00000598355 MT4P47944 62 aa5.31□□□□□ -1.56
TRIM28-213ENST00000598355 KRTAP15-1Q3LI76 137 aa5.3□□□□□ -1.56
TRIM28-213ENST00000598355 HMCN1Q96RW7 5635 aa5.29□□□□□ -1.56
TRIM28-213ENST00000598355 KRTAP5-5Q701N2 237 aaPredicted RBP5.28□□□□□ -1.56
TRIM28-213ENST00000598355 KRTAP4-6Q9BYQ5 205 aa5.22□□□□□ -1.57
TRIM28-213ENST00000598355 LCE3CQ5T5A8 94 aa5.19□□□□□ -1.58
TRIM28-213ENST00000598355 GPR98Q8WXG9 6306 aa5.16□□□□□ -1.58
TRIM28-213ENST00000598355 LOC100996750A0A140TA64 210 aa5.16□□□□□ -1.58
TRIM28-213ENST00000598355 SPRR5A0A1B0GTR4 108 aa5.08□□□□□ -1.6
TRIM28-213ENST00000598355 KRTAP20-2Q3LI61 65 aa5.08□□□□□ -1.6
TRIM28-213ENST00000598355 AHNAK2Q8IVF2 5795 aa5.05□□□□□ -1.6
TRIM28-213ENST00000598355 KRTAP12-4P60329 112 aa5.02□□□□□ -1.61
TRIM28-213ENST00000598355 SYNE1Q8NF91 8797 aaKnown RBP5.02□□□□□ -1.61
TRIM28-213ENST00000598355 KRTAP5-10Q6L8G5 202 aa5□□□□□ -1.61
TRIM28-213ENST00000598355 KRTAP9-6A8MVA2 160 aa4.95□□□□□ -1.62
TRIM28-213ENST00000598355 KRTAP5-3Q6L8H2 238 aa4.95□□□□□ -1.62
TRIM28-213ENST00000598355 MT1AP04731 61 aa4.92□□□□□ -1.62
TRIM28-213ENST00000598355 KRTAP6-1Q3LI64 71 aa4.87□□□□□ -1.63
TRIM28-213ENST00000598355 BRK1Q8WUW1 75 aa4.87□□□□□ -1.63
TRIM28-213ENST00000598355 KRTAP5-2Q701N4 177 aa4.8□□□□□ -1.64
TRIM28-213ENST00000598355 KRTAP5-7Q6L8G8 165 aa4.79□□□□□ -1.64
TRIM28-213ENST00000598355 KRTAP9-4Q9BYQ2 154 aa4.71□□□□□ -1.66
TRIM28-213ENST00000598355 KRTAP6-2Q3LI66 62 aa4.6□□□□□ -1.67
TRIM28-213ENST00000598355 KRTAP4-11Q9BYQ6 195 aa4.59□□□□□ -1.67
TRIM28-213ENST00000598355 PMAIP1Q13794 54 aa4.57□□□□□ -1.68
TRIM28-213ENST00000598355 KRTAP5-8O75690 187 aa4.46□□□□□ -1.7
TRIM28-213ENST00000598355 MT3P25713 68 aa4.46□□□□□ -1.7
TRIM28-213ENST00000598355 PRAC1Q96KF2 57 aa4.41□□□□□ -1.7
TRIM28-213ENST00000598355 OBSCNQ5VST9 7968 aa4.41□□□□□ -1.7
TRIM28-213ENST00000598355 PRO0628Q9UI54 55 aa4.35□□□□□ -1.71
TRIM28-213ENST00000598355 KRTAP5-1Q6L8H4 278 aa4.26□□□□□ -1.73
TRIM28-213ENST00000598355 KTN1-AS1Q86SY8 53 aa4.15□□□□□ -1.75
TRIM28-213ENST00000598355 KRTAP9-9Q9BYP9 154 aa4.14□□□□□ -1.75
TRIM28-213ENST00000598355 MUC5BQ9HC84 5762 aaPredicted RBP4.12□□□□□ -1.75
TRIM28-213ENST00000598355 LCE1EQ5T753 118 aa4.12□□□□□ -1.75
TRIM28-213ENST00000598355 MUC5ACP98088 5654 aa4.11□□□□□ -1.75
TRIM28-213ENST00000598355 AHNAKQ09666 5890 aaKnown RBP4.04□□□□□ -1.76
TRIM28-213ENST00000598355 SVIPQ8NHG7 77 aa3.89□□□□□ -1.79
TRIM28-213ENST00000598355 KRTAP4-2Q9BYR5 136 aa3.89□□□□□ -1.79
TRIM28-213ENST00000598355 LCE1CQ5T751 118 aa3.82□□□□□ -1.8
TRIM28-213ENST00000598355 LCE1BQ5T7P3 118 aa3.82□□□□□ -1.8
TRIM28-213ENST00000598355 LCE3DQ9BYE3 92 aa3.75□□□□□ -1.81
TRIM28-213ENST00000598355 LUZP6Q538Z0 58 aa3.66□□□□□ -1.82
TRIM28-213ENST00000598355 LCE3EQ5T5B0 92 aa3.55□□□□□ -1.84
TRIM28-213ENST00000598355 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.53□□□□□ -1.84
TRIM28-213ENST00000598355 KRTAP5-11Q6L8G4 156 aa3.47□□□□□ -1.85
TRIM28-213ENST00000598355 KRTAP4-12Q9BQ66 201 aa3.37□□□□□ -1.87
TRIM28-213ENST00000598355 LCE1FQ5T754 118 aa3.32□□□□□ -1.88
TRIM28-213ENST00000598355 KRTAP21-2Q3LI59 83 aa3.23□□□□□ -1.89
TRIM28-213ENST00000598355 NDUFAF8A1L188 74 aa3.01□□□□□ -1.93
TRIM28-213ENST00000598355 PHGR1C9JFL3 82 aa2.98□□□□□ -1.93
TRIM28-213ENST00000598355 KRTAP4-4Q9BYR3 166 aa2.85□□□□□ -1.95
TRIM28-213ENST00000598355 PRM1P04553 51 aa2.72□□□□□ -1.97
TRIM28-213ENST00000598355 MUC19Q7Z5P9 8384 aa2.7□□□□□ -1.98
TRIM28-213ENST00000598355 INE1O15225 51 aa2.46□□□□□ -2.02
TRIM28-213ENST00000598355 A0A0A0MQY5 61 aa2.37□□□□□ -2.03
TRIM28-213ENST00000598355 KRTAP21-1Q3LI58 79 aa2.18□□□□□ -2.06
TRIM28-213ENST00000598355 MUC16Q8WXI7 14507 aa1.94□□□□□ -2.1
TRIM28-213ENST00000598355 H3BS24 57 aa1.92□□□□□ -2.1
Retrieved 78 of 20,778 RNA–protein pairs in 122.9 ms