RNA–Protein interactions for RNA: ENST00000597776.1

LSM4-205, Transcript of LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated, human

TSL 2

Gene LSM4, Length 446 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
LSM4-205	ENST00000597776	ATP5E	P56381	51 aa	Predicted RBP	3.64	□□□□□ -1.83
LSM4-205	ENST00000597776	KRTAP5-10	Q6L8G5	202 aa		3.64	□□□□□ -1.83
LSM4-205	ENST00000597776		A8MU10	97 aa		3.63	□□□□□ -1.83
LSM4-205	ENST00000597776	SMIM26	A0A096LP01	95 aa		3.62	□□□□□ -1.83
LSM4-205	ENST00000597776	CCDC179	H3BU77	68 aa		3.62	□□□□□ -1.83
LSM4-205	ENST00000597776	TNP1	P09430	55 aa		3.59	□□□□□ -1.83
LSM4-205	ENST00000597776	KRTAP4-7	Q9BYR0	210 aa		3.58	□□□□□ -1.84
LSM4-205	ENST00000597776	PRR15L	Q9BU68	103 aa		3.57	□□□□□ -1.84
LSM4-205	ENST00000597776	TMEM258	P61165	79 aa		3.53	□□□□□ -1.84
LSM4-205	ENST00000597776	LINC01558	Q9Y6Z2	57 aa		3.53	□□□□□ -1.84
LSM4-205	ENST00000597776	KRTAP12-3	P60328	96 aa		3.51	□□□□□ -1.85
LSM4-205	ENST00000597776	KRTAP5-7	Q6L8G8	165 aa		3.51	□□□□□ -1.85
LSM4-205	ENST00000597776	KRTAP5-3	Q6L8H2	238 aa		3.51	□□□□□ -1.85
LSM4-205	ENST00000597776	KRTAP20-2	Q3LI61	65 aa		3.49	□□□□□ -1.85
LSM4-205	ENST00000597776	KRTAP5-5	Q701N2	237 aa	Predicted RBP	3.46	□□□□□ -1.86
LSM4-205	ENST00000597776	UQCR11	O14957	56 aa		3.44	□□□□□ -1.86
LSM4-205	ENST00000597776	SPRR5	A0A1B0GTR4	108 aa		3.42	□□□□□ -1.86
LSM4-205	ENST00000597776	LOC100996750	A0A140TA64	210 aa		3.4	□□□□□ -1.87
LSM4-205	ENST00000597776	KRTAP12-4	P60329	112 aa		3.39	□□□□□ -1.87
LSM4-205	ENST00000597776	MIR22HG	Q0VDD5	57 aa		3.35	□□□□□ -1.87
LSM4-205	ENST00000597776		V9GYY9	64 aa		3.33	□□□□□ -1.88
LSM4-205	ENST00000597776	SYNE1	Q8NF91	8797 aa	Known RBP	3.32	□□□□□ -1.88
LSM4-205	ENST00000597776		K7ERS5	55 aa		3.31	□□□□□ -1.88
LSM4-205	ENST00000597776	KRTAP25-1	Q3LHN0	102 aa		3.31	□□□□□ -1.88
LSM4-205	ENST00000597776		Q1T7F1	81 aa		3.3	□□□□□ -1.88
LSM4-205	ENST00000597776	PSPHP1	O15172	72 aa		3.28	□□□□□ -1.88
LSM4-205	ENST00000597776	SVIP	Q8NHG7	77 aa		3.22	□□□□□ -1.89
LSM4-205	ENST00000597776	KRTAP19-4	Q3LI73	84 aa		3.21	□□□□□ -1.9
LSM4-205	ENST00000597776	KRTAP15-1	Q3LI76	137 aa		3.21	□□□□□ -1.9
LSM4-205	ENST00000597776	LCE3C	Q5T5A8	94 aa		3.21	□□□□□ -1.9
LSM4-205	ENST00000597776	KRTAP4-11	Q9BYQ6	195 aa		3.21	□□□□□ -1.9
LSM4-205	ENST00000597776	KRTAP23-1	A1A580	65 aa		3.2	□□□□□ -1.9
LSM4-205	ENST00000597776		A6NED7	52 aa		3.19	□□□□□ -1.9
LSM4-205	ENST00000597776	KRTAP5-2	Q701N4	177 aa		3.19	□□□□□ -1.9
LSM4-205	ENST00000597776	KRTAP6-1	Q3LI64	71 aa		3.18	□□□□□ -1.9
LSM4-205	ENST00000597776	MT1A	P04731	61 aa		3.16	□□□□□ -1.9
LSM4-205	ENST00000597776	CDC42SE1	Q9NRR8	79 aa		3.13	□□□□□ -1.91
LSM4-205	ENST00000597776	KRTAP5-8	O75690	187 aa		3.12	□□□□□ -1.91
LSM4-205	ENST00000597776	RPS28	P62857	69 aa	Known RBP	3.12	□□□□□ -1.91
LSM4-205	ENST00000597776	AHNAK	Q09666	5890 aa	Known RBP	3.09	□□□□□ -1.91
LSM4-205	ENST00000597776	MUC5AC	P98088	5654 aa		3.09	□□□□□ -1.91
LSM4-205	ENST00000597776	KRTAP9-6	A8MVA2	160 aa		3.07	□□□□□ -1.92
LSM4-205	ENST00000597776	ROMO1	P60602	79 aa		3.07	□□□□□ -1.92
LSM4-205	ENST00000597776	KRTAP6-2	Q3LI66	62 aa		3.07	□□□□□ -1.92
LSM4-205	ENST00000597776	KRTAP9-4	Q9BYQ2	154 aa		3.07	□□□□□ -1.92
LSM4-205	ENST00000597776	PCP4	P48539	62 aa		3.06	□□□□□ -1.92
LSM4-205	ENST00000597776	MUC5B	Q9HC84	5762 aa	Predicted RBP	3.06	□□□□□ -1.92
LSM4-205	ENST00000597776	OBSCN	Q5VST9	7968 aa		3.03	□□□□□ -1.92
LSM4-205	ENST00000597776	KRTAP9-9	Q9BYP9	154 aa		2.97	□□□□□ -1.93
LSM4-205	ENST00000597776	KRTAP5-1	Q6L8H4	278 aa		2.9	□□□□□ -1.95
LSM4-205	ENST00000597776	MT3	P25713	68 aa		2.89	□□□□□ -1.95
LSM4-205	ENST00000597776	BRK1	Q8WUW1	75 aa		2.73	□□□□□ -1.97
LSM4-205	ENST00000597776	LCE1E	Q5T753	118 aa		2.69	□□□□□ -1.98
LSM4-205	ENST00000597776	KRTAP4-2	Q9BYR5	136 aa		2.59	□□□□□ -1.99
LSM4-205	ENST00000597776	LCE1B	Q5T7P3	118 aa		2.58	□□□□□ -2
LSM4-205	ENST00000597776	PMAIP1	Q13794	54 aa		2.56	□□□□□ -2
LSM4-205	ENST00000597776	PRO0628	Q9UI54	55 aa		2.53	□□□□□ -2
LSM4-205	ENST00000597776	LCE1C	Q5T751	118 aa		2.5	□□□□□ -2.01
LSM4-205	ENST00000597776	PRAC1	Q96KF2	57 aa		2.46	□□□□□ -2.02
LSM4-205	ENST00000597776	KRTAP4-12	Q9BQ66	201 aa		2.43	□□□□□ -2.02
LSM4-205	ENST00000597776	KTN1-AS1	Q86SY8	53 aa		2.31	□□□□□ -2.04
LSM4-205	ENST00000597776		H3BS24	57 aa		2.29	□□□□□ -2.04
LSM4-205	ENST00000597776	KRTAP5-11	Q6L8G4	156 aa		2.28	□□□□□ -2.04
LSM4-205	ENST00000597776	LCE3D	Q9BYE3	92 aa		2.27	□□□□□ -2.05
LSM4-205	ENST00000597776	KRTAP5-6	Q6L8G9	129 aa	Predicted RBP	2.25	□□□□□ -2.05
LSM4-205	ENST00000597776	LCE1F	Q5T754	118 aa		2.23	□□□□□ -2.05
LSM4-205	ENST00000597776	PHGR1	C9JFL3	82 aa		2.13	□□□□□ -2.07
LSM4-205	ENST00000597776		A0A0A0MQY5	61 aa		2.11	□□□□□ -2.07
LSM4-205	ENST00000597776	LUZP6	Q538Z0	58 aa		2.11	□□□□□ -2.07
LSM4-205	ENST00000597776	LCE3E	Q5T5B0	92 aa		2.1	□□□□□ -2.07
LSM4-205	ENST00000597776	KRTAP21-2	Q3LI59	83 aa		2.09	□□□□□ -2.07
LSM4-205	ENST00000597776	KRTAP4-4	Q9BYR3	166 aa		1.97	□□□□□ -2.09
LSM4-205	ENST00000597776	MUC19	Q7Z5P9	8384 aa		1.88	□□□□□ -2.11
LSM4-205	ENST00000597776	NDUFAF8	A1L188	74 aa		1.83	□□□□□ -2.12
LSM4-205	ENST00000597776	INE1	O15225	51 aa		1.61	□□□□□ -2.15
LSM4-205	ENST00000597776	KRTAP21-1	Q3LI58	79 aa		1.6	□□□□□ -2.15
LSM4-205	ENST00000597776	PRM1	P04553	51 aa		1.56	□□□□□ -2.16
LSM4-205	ENST00000597776	MUC16	Q8WXI7	14507 aa		1.36	□□□□□ -2.19

Retrieved 78 of 20,778 RNA–protein pairs in 188.1 ms