RNA–Protein interactions for RNA: ENST00000594759.5

LIG1-207, Transcript of DNA ligase 1, humanhuman

TSL 1 (best)

Gene LIG1, Length 4,102 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-207ENST00000594759 KMT2DO14686 5537 aa4.03□□□□□ -1.76
LIG1-207ENST00000594759 MT1GP13640 62 aa3.99□□□□□ -1.77
LIG1-207ENST00000594759 DSTQ03001 7570 aaKnown RBP3.99□□□□□ -1.77
LIG1-207ENST00000594759 LCE3BQ5TA77 95 aa3.97□□□□□ -1.77
LIG1-207ENST00000594759 MT1LQ93083 61 aa3.93□□□□□ -1.78
LIG1-207ENST00000594759 FCGBPQ9Y6R7 5405 aaPredicted RBP3.91□□□□□ -1.78
LIG1-207ENST00000594759 LOC100996750A0A140TA64 210 aa3.88□□□□□ -1.79
LIG1-207ENST00000594759 MT1EP04732 61 aa3.87□□□□□ -1.79
LIG1-207ENST00000594759 LCE3DQ9BYE3 92 aa3.87□□□□□ -1.79
LIG1-207ENST00000594759 KRTAP19-7Q3SYF9 63 aa3.86□□□□□ -1.79
LIG1-207ENST00000594759 PRM1P04553 51 aa3.86□□□□□ -1.79
LIG1-207ENST00000594759 KRTAP19-6Q3LI70 58 aa3.86□□□□□ -1.79
LIG1-207ENST00000594759 LCE3EQ5T5B0 92 aa3.86□□□□□ -1.79
LIG1-207ENST00000594759 SPRR2EP22531 72 aa3.83□□□□□ -1.8
LIG1-207ENST00000594759 SPRR2BP35325 72 aa3.83□□□□□ -1.8
LIG1-207ENST00000594759 SPRR2AP35326 72 aa3.83□□□□□ -1.8
LIG1-207ENST00000594759 KRTAP4-3Q9BYR4 195 aa3.82□□□□□ -1.8
LIG1-207ENST00000594759 KRTAP9-2Q9BYQ4 174 aa3.8□□□□□ -1.8
LIG1-207ENST00000594759 KRTAP19-3Q7Z4W3 81 aa3.79□□□□□ -1.8
LIG1-207ENST00000594759 SSPOA2VEC9 5147 aa3.76□□□□□ -1.81
LIG1-207ENST00000594759 SYNE2Q8WXH0 6885 aaKnown RBP3.76□□□□□ -1.81
LIG1-207ENST00000594759 MUC12Q9UKN1 5478 aa3.76□□□□□ -1.81
LIG1-207ENST00000594759 KRTAP4-9Q9BYQ8 210 aa3.72□□□□□ -1.81
LIG1-207ENST00000594759 MT1MQ8N339 61 aa3.7□□□□□ -1.82
LIG1-207ENST00000594759 SPRR2DP22532 72 aa3.67□□□□□ -1.82
LIG1-207ENST00000594759 LCE2DQ5TA82 110 aaPredicted RBP3.67□□□□□ -1.82
LIG1-207ENST00000594759 MACF1Q9UPN3 7388 aaKnown RBP3.63□□□□□ -1.83
LIG1-207ENST00000594759 KRTAP9-7A8MTY7 169 aa3.59□□□□□ -1.83
LIG1-207ENST00000594759 MT1AP04731 61 aa3.49□□□□□ -1.85
LIG1-207ENST00000594759 KRTAP6-2Q3LI66 62 aa3.43□□□□□ -1.86
LIG1-207ENST00000594759 KRTAP9-6A0A140TA67 174 aa3.43□□□□□ -1.86
LIG1-207ENST00000594759 LCE5AQ5TCM9 118 aa3.42□□□□□ -1.86
LIG1-207ENST00000594759 LCE1AQ5T7P2 110 aa3.41□□□□□ -1.86
LIG1-207ENST00000594759 KRTAP6-1Q3LI64 71 aa3.37□□□□□ -1.87
LIG1-207ENST00000594759 MT4P47944 62 aa3.37□□□□□ -1.87
LIG1-207ENST00000594759 MDN1Q9NU22 5596 aa3.35□□□□□ -1.87
LIG1-207ENST00000594759 KRTAP9-1A8MXZ3 250 aaPredicted RBP3.33□□□□□ -1.88
LIG1-207ENST00000594759 KRTAP6-3Q3LI67 103 aa3.33□□□□□ -1.88
LIG1-207ENST00000594759 KRTAP2-2Q9BYT5 123 aa3.31□□□□□ -1.88
LIG1-207ENST00000594759 MT3P25713 68 aa3.24□□□□□ -1.89
LIG1-207ENST00000594759 LCE1EQ5T753 118 aa3.24□□□□□ -1.89
LIG1-207ENST00000594759 KRTAP5-5Q701N2 237 aaPredicted RBP3.22□□□□□ -1.89
LIG1-207ENST00000594759 GPR98Q8WXG9 6306 aa3.12□□□□□ -1.91
LIG1-207ENST00000594759 KRTAP5-9P26371 169 aa3.11□□□□□ -1.91
LIG1-207ENST00000594759 KRTAP9-4Q9BYQ2 154 aa3.08□□□□□ -1.92
LIG1-207ENST00000594759 LCE1DQ5T752 114 aa3.08□□□□□ -1.92
LIG1-207ENST00000594759 LCE1BQ5T7P3 118 aa3.04□□□□□ -1.92
LIG1-207ENST00000594759 NEBP20929 6669 aa3□□□□□ -1.93
LIG1-207ENST00000594759 MUC19Q7Z5P9 8384 aa3□□□□□ -1.93
LIG1-207ENST00000594759 KRTAP20-1Q3LI63 56 aa2.99□□□□□ -1.93
LIG1-207ENST00000594759 KRTAP4-6Q9BYQ5 205 aa2.92□□□□□ -1.94
LIG1-207ENST00000594759 LCE4AQ5TA78 99 aa2.88□□□□□ -1.95
LIG1-207ENST00000594759 KRTAP4-11Q9BYQ6 195 aa2.86□□□□□ -1.95
LIG1-207ENST00000594759 KRTAP20-2Q3LI61 65 aa2.74□□□□□ -1.97
LIG1-207ENST00000594759 LCE1FQ5T754 118 aa2.67□□□□□ -1.98
LIG1-207ENST00000594759 MUC5ACP98088 5654 aa2.65□□□□□ -1.99
LIG1-207ENST00000594759 HMCN1Q96RW7 5635 aa2.61□□□□□ -1.99
LIG1-207ENST00000594759 KRTAP5-4Q6L8H1 288 aa2.53□□□□□ -2
LIG1-207ENST00000594759 LCE1CQ5T751 118 aa2.36□□□□□ -2.03
LIG1-207ENST00000594759 KRTAP4-4Q9BYR3 166 aa2.34□□□□□ -2.03
LIG1-207ENST00000594759 KRTAP4-12Q9BQ66 201 aa2.33□□□□□ -2.04
LIG1-207ENST00000594759 KRTAP4-2Q9BYR5 136 aa2.33□□□□□ -2.04
LIG1-207ENST00000594759 KRTAP9-9Q9BYP9 154 aa2.32□□□□□ -2.04
LIG1-207ENST00000594759 KRTAP5-10Q6L8G5 202 aa2.32□□□□□ -2.04
LIG1-207ENST00000594759 KRTAP5-3Q6L8H2 238 aa2.29□□□□□ -2.04
LIG1-207ENST00000594759 AHNAK2Q8IVF2 5795 aa2.29□□□□□ -2.04
LIG1-207ENST00000594759 KRTAP5-2Q701N4 177 aa2.28□□□□□ -2.04
LIG1-207ENST00000594759 KRTAP5-8O75690 187 aa2.15□□□□□ -2.07
LIG1-207ENST00000594759 MUC5BQ9HC84 5762 aaPredicted RBP2.13□□□□□ -2.07
LIG1-207ENST00000594759 KRTAP21-1Q3LI58 79 aa2.1□□□□□ -2.07
LIG1-207ENST00000594759 KRTAP5-1Q6L8H4 278 aa2.05□□□□□ -2.08
LIG1-207ENST00000594759 KRTAP21-2Q3LI59 83 aa1.94□□□□□ -2.1
LIG1-207ENST00000594759 AHNAKQ09666 5890 aaKnown RBP1.93□□□□□ -2.1
LIG1-207ENST00000594759 KRTAP5-11Q6L8G4 156 aa1.82□□□□□ -2.12
LIG1-207ENST00000594759 KRTAP5-6Q6L8G9 129 aaPredicted RBP1.74□□□□□ -2.13
LIG1-207ENST00000594759 KRTAP5-7Q6L8G8 165 aa1.72□□□□□ -2.13
LIG1-207ENST00000594759 PHGR1C9JFL3 82 aa1.57□□□□□ -2.16
LIG1-207ENST00000594759 MUC16Q8WXI7 14507 aa1.12□□□□□ -2.23
Retrieved 78 of 20,778 RNA–protein pairs in 152 ms