RNA–Protein interactions for RNA: ENST00000593564.2

LSM4-202, Transcript of LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

TSL 2

Gene LSM4, Length 656 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM4-202ENST00000593564 A0A1B0GU69 56 aa8.16□□□□□ -1.1
LSM4-202ENST00000593564 H7BZZ5 65 aa8.15□□□□□ -1.1
LSM4-202ENST00000593564 COX7CP15954 63 aa8.15□□□□□ -1.1
LSM4-202ENST00000593564 KRTAP4-7Q9BYR0 210 aa8.03□□□□□ -1.12
LSM4-202ENST00000593564 KRTAP5-7Q6L8G8 165 aa8□□□□□ -1.13
LSM4-202ENST00000593564 KRTAP12-3P60328 96 aa7.98□□□□□ -1.13
LSM4-202ENST00000593564 KRTAP5-3Q6L8H2 238 aa7.98□□□□□ -1.13
LSM4-202ENST00000593564 KRTAP20-2Q3LI61 65 aa7.92□□□□□ -1.14
LSM4-202ENST00000593564 KRTAP5-5Q701N2 237 aaPredicted RBP7.88□□□□□ -1.15
LSM4-202ENST00000593564 SPRR5A0A1B0GTR4 108 aa7.85□□□□□ -1.15
LSM4-202ENST00000593564 PRR15LQ9BU68 103 aa7.8□□□□□ -1.16
LSM4-202ENST00000593564 KRTAP12-4P60329 112 aa7.76□□□□□ -1.17
LSM4-202ENST00000593564 LINC01558Q9Y6Z2 57 aa7.65□□□□□ -1.18
LSM4-202ENST00000593564 LOC100996750A0A140TA64 210 aa7.63□□□□□ -1.19
LSM4-202ENST00000593564 SYNE1Q8NF91 8797 aaKnown RBP7.63□□□□□ -1.19
LSM4-202ENST00000593564 ANAPC13Q9BS18 74 aa7.62□□□□□ -1.19
LSM4-202ENST00000593564 ATP5EP56381 51 aaPredicted RBP7.57□□□□□ -1.2
LSM4-202ENST00000593564 KRTAP25-1Q3LHN0 102 aa7.57□□□□□ -1.2
LSM4-202ENST00000593564 UQCR11O14957 56 aa7.54□□□□□ -1.2
LSM4-202ENST00000593564 KRTAP19-4Q3LI73 84 aa7.53□□□□□ -1.2
LSM4-202ENST00000593564 CCDC179H3BU77 68 aa7.5□□□□□ -1.21
LSM4-202ENST00000593564 KRTAP15-1Q3LI76 137 aa7.33□□□□□ -1.24
LSM4-202ENST00000593564 MIR22HGQ0VDD5 57 aa7.32□□□□□ -1.24
LSM4-202ENST00000593564 KRTAP4-11Q9BYQ6 195 aa7.32□□□□□ -1.24
LSM4-202ENST00000593564 LCE3CQ5T5A8 94 aa7.31□□□□□ -1.24
LSM4-202ENST00000593564 KRTAP23-1A1A580 65 aa7.28□□□□□ -1.24
LSM4-202ENST00000593564 PCP4P48539 62 aa7.28□□□□□ -1.24
LSM4-202ENST00000593564 KRTAP5-2Q701N4 177 aa7.28□□□□□ -1.24
LSM4-202ENST00000593564 K7ERS5 55 aa7.27□□□□□ -1.25
LSM4-202ENST00000593564 MT1AP04731 61 aa7.22□□□□□ -1.25
LSM4-202ENST00000593564 TMEM258P61165 79 aa7.21□□□□□ -1.26
LSM4-202ENST00000593564 KRTAP6-1Q3LI64 71 aa7.19□□□□□ -1.26
LSM4-202ENST00000593564 KRTAP5-8O75690 187 aa7.08□□□□□ -1.28
LSM4-202ENST00000593564 AHNAKQ09666 5890 aaKnown RBP7.04□□□□□ -1.28
LSM4-202ENST00000593564 MUC5BQ9HC84 5762 aaPredicted RBP7.03□□□□□ -1.28
LSM4-202ENST00000593564 KRTAP9-4Q9BYQ2 154 aa7.01□□□□□ -1.29
LSM4-202ENST00000593564 MUC5ACP98088 5654 aa6.99□□□□□ -1.29
LSM4-202ENST00000593564 SVIPQ8NHG7 77 aa6.99□□□□□ -1.29
LSM4-202ENST00000593564 PSPHP1O15172 72 aa6.95□□□□□ -1.3
LSM4-202ENST00000593564 KRTAP6-2Q3LI66 62 aa6.94□□□□□ -1.3
LSM4-202ENST00000593564 V9GYY9 64 aa6.91□□□□□ -1.3
LSM4-202ENST00000593564 KRTAP9-6A8MVA2 160 aa6.9□□□□□ -1.3
LSM4-202ENST00000593564 OBSCNQ5VST9 7968 aa6.89□□□□□ -1.31
LSM4-202ENST00000593564 Q1T7F1 81 aa6.84□□□□□ -1.31
LSM4-202ENST00000593564 CDC42SE1Q9NRR8 79 aa6.83□□□□□ -1.32
LSM4-202ENST00000593564 RPS28P62857 69 aaKnown RBP6.78□□□□□ -1.32
LSM4-202ENST00000593564 KRTAP9-9Q9BYP9 154 aa6.78□□□□□ -1.32
LSM4-202ENST00000593564 A6NED7 52 aa6.69□□□□□ -1.34
LSM4-202ENST00000593564 ROMO1P60602 79 aa6.69□□□□□ -1.34
LSM4-202ENST00000593564 MT3P25713 68 aa6.62□□□□□ -1.35
LSM4-202ENST00000593564 KRTAP5-1Q6L8H4 278 aa6.59□□□□□ -1.35
LSM4-202ENST00000593564 LCE1EQ5T753 118 aa6.18□□□□□ -1.42
LSM4-202ENST00000593564 PRO0628Q9UI54 55 aa6.01□□□□□ -1.45
LSM4-202ENST00000593564 KRTAP4-2Q9BYR5 136 aa5.87□□□□□ -1.47
LSM4-202ENST00000593564 LCE1BQ5T7P3 118 aa5.82□□□□□ -1.48
LSM4-202ENST00000593564 LCE1CQ5T751 118 aa5.73□□□□□ -1.49
LSM4-202ENST00000593564 BRK1Q8WUW1 75 aa5.69□□□□□ -1.5
LSM4-202ENST00000593564 PMAIP1Q13794 54 aa5.62□□□□□ -1.51
LSM4-202ENST00000593564 KTN1-AS1Q86SY8 53 aa5.47□□□□□ -1.53
LSM4-202ENST00000593564 KRTAP4-12Q9BQ66 201 aa5.43□□□□□ -1.54
LSM4-202ENST00000593564 KRTAP5-11Q6L8G4 156 aa5.23□□□□□ -1.57
LSM4-202ENST00000593564 LCE3DQ9BYE3 92 aa5.19□□□□□ -1.58
LSM4-202ENST00000593564 LCE1FQ5T754 118 aa5.18□□□□□ -1.58
LSM4-202ENST00000593564 KRTAP5-6Q6L8G9 129 aaPredicted RBP5.18□□□□□ -1.58
LSM4-202ENST00000593564 PRAC1Q96KF2 57 aa4.9□□□□□ -1.63
LSM4-202ENST00000593564 LCE3EQ5T5B0 92 aa4.82□□□□□ -1.64
LSM4-202ENST00000593564 PHGR1C9JFL3 82 aa4.81□□□□□ -1.64
LSM4-202ENST00000593564 H3BS24 57 aa4.75□□□□□ -1.65
LSM4-202ENST00000593564 KRTAP21-2Q3LI59 83 aa4.74□□□□□ -1.65
LSM4-202ENST00000593564 KRTAP4-4Q9BYR3 166 aa4.38□□□□□ -1.71
LSM4-202ENST00000593564 NDUFAF8A1L188 74 aa4.27□□□□□ -1.73
LSM4-202ENST00000593564 MUC19Q7Z5P9 8384 aa4.26□□□□□ -1.73
LSM4-202ENST00000593564 LUZP6Q538Z0 58 aa4.18□□□□□ -1.74
LSM4-202ENST00000593564 A0A0A0MQY5 61 aa4.04□□□□□ -1.76
LSM4-202ENST00000593564 INE1O15225 51 aa3.74□□□□□ -1.81
LSM4-202ENST00000593564 KRTAP21-1Q3LI58 79 aa3.68□□□□□ -1.82
LSM4-202ENST00000593564 PRM1P04553 51 aa3.39□□□□□ -1.87
LSM4-202ENST00000593564 MUC16Q8WXI7 14507 aa3.02□□□□□ -1.93
Retrieved 78 of 20,778 RNA–protein pairs in 6.2 ms