RNA–Protein interactions for RNA: ENST00000590499.1

SMAD4-211, Transcript of SMAD family member 4, humanhuman

TSL 4

Gene SMAD4, Length 545 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD4-211ENST00000590499 SPRR2AP35326 72 aa4.42□□□□□ -1.7
SMAD4-211ENST00000590499 ANAPC13Q9BS18 74 aa4.41□□□□□ -1.7
SMAD4-211ENST00000590499 LCE3AQ5TA76 89 aa4.4□□□□□ -1.71
SMAD4-211ENST00000590499 SERP1Q9Y6X1 66 aa4.4□□□□□ -1.71
SMAD4-211ENST00000590499 SPATA8Q6RVD6 105 aa4.36□□□□□ -1.71
SMAD4-211ENST00000590499 CAMK2N1Q7Z7J9 78 aa4.36□□□□□ -1.71
SMAD4-211ENST00000590499 A0A1B0GU33 70 aa4.35□□□□□ -1.71
SMAD4-211ENST00000590499 CCDC179H3BU77 68 aa4.35□□□□□ -1.71
SMAD4-211ENST00000590499 KRTAP2-3P0C7H8 128 aa4.35□□□□□ -1.71
SMAD4-211ENST00000590499 KRTAP2-4Q9BYR9 128 aa4.35□□□□□ -1.71
SMAD4-211ENST00000590499 A0A0D9SG42 100 aa4.34□□□□□ -1.71
SMAD4-211ENST00000590499 KRTAP12-1P59990 96 aa4.3□□□□□ -1.72
SMAD4-211ENST00000590499 SMIM26A0A096LP01 95 aa4.29□□□□□ -1.72
SMAD4-211ENST00000590499 A0A1B0GU69 56 aa4.29□□□□□ -1.72
SMAD4-211ENST00000590499 SPRR2DP22532 72 aa4.27□□□□□ -1.73
SMAD4-211ENST00000590499 ATP5EP56381 51 aaPredicted RBP4.27□□□□□ -1.73
SMAD4-211ENST00000590499 SPINT4Q6UDR6 99 aa4.27□□□□□ -1.73
SMAD4-211ENST00000590499 LCE3EQ5T5B0 92 aa4.25□□□□□ -1.73
SMAD4-211ENST00000590499 KRTAP19-7Q3SYF9 63 aa4.23□□□□□ -1.73
SMAD4-211ENST00000590499 A8MU10 97 aa4.22□□□□□ -1.73
SMAD4-211ENST00000590499 PRO0628Q9UI54 55 aa4.22□□□□□ -1.73
SMAD4-211ENST00000590499 KRTAP2-1Q9BYU5 128 aa4.21□□□□□ -1.74
SMAD4-211ENST00000590499 PSPHP1O15172 72 aa4.2□□□□□ -1.74
SMAD4-211ENST00000590499 MT1EP04732 61 aa4.18□□□□□ -1.74
SMAD4-211ENST00000590499 TMEM258P61165 79 aa4.18□□□□□ -1.74
SMAD4-211ENST00000590499 LINC01558Q9Y6Z2 57 aa4.18□□□□□ -1.74
SMAD4-211ENST00000590499 PRR15LQ9BU68 103 aa4.16□□□□□ -1.74
SMAD4-211ENST00000590499 KRTAP19-3Q7Z4W3 81 aa4.12□□□□□ -1.75
SMAD4-211ENST00000590499 C10orf95Q9H7T3 257 aa4.11□□□□□ -1.75
SMAD4-211ENST00000590499 DSTQ03001 7570 aaKnown RBP4.11□□□□□ -1.75
SMAD4-211ENST00000590499 PMAIP1Q13794 54 aa4.1□□□□□ -1.75
SMAD4-211ENST00000590499 KRTAP19-5Q3LI72 72 aa4.1□□□□□ -1.75
SMAD4-211ENST00000590499 KRTAP5-5Q701N2 237 aaPredicted RBP4.09□□□□□ -1.75
SMAD4-211ENST00000590499 TNP1P09430 55 aa4.05□□□□□ -1.76
SMAD4-211ENST00000590499 UQCR11O14957 56 aa4.04□□□□□ -1.76
SMAD4-211ENST00000590499 MT1GP13640 62 aa4.02□□□□□ -1.77
SMAD4-211ENST00000590499 MT1LQ93083 61 aa3.99□□□□□ -1.77
SMAD4-211ENST00000590499 KRTAP5-8O75690 187 aa3.98□□□□□ -1.77
SMAD4-211ENST00000590499 MT1MQ8N339 61 aa3.97□□□□□ -1.77
SMAD4-211ENST00000590499 PP632Q6XCG6 107 aa3.96□□□□□ -1.78
SMAD4-211ENST00000590499 MIR22HGQ0VDD5 57 aa3.95□□□□□ -1.78
SMAD4-211ENST00000590499 Q1T7F1 81 aa3.93□□□□□ -1.78
SMAD4-211ENST00000590499 LUZP6Q538Z0 58 aa3.91□□□□□ -1.78
SMAD4-211ENST00000590499 LCE1CQ5T751 118 aa3.9□□□□□ -1.79
SMAD4-211ENST00000590499 LCE1BQ5T7P3 118 aa3.9□□□□□ -1.79
SMAD4-211ENST00000590499 KRTAP12-3P60328 96 aa3.88□□□□□ -1.79
SMAD4-211ENST00000590499 KRTAP25-1Q3LHN0 102 aa3.86□□□□□ -1.79
SMAD4-211ENST00000590499 GPR98Q8WXG9 6306 aa3.85□□□□□ -1.79
SMAD4-211ENST00000590499 HMCN1Q96RW7 5635 aa3.84□□□□□ -1.8
SMAD4-211ENST00000590499 K7ERS5 55 aa3.83□□□□□ -1.8
SMAD4-211ENST00000590499 A6NED7 52 aa3.76□□□□□ -1.81
SMAD4-211ENST00000590499 RPS28P62857 69 aaKnown RBP3.76□□□□□ -1.81
SMAD4-211ENST00000590499 MT4P47944 62 aa3.73□□□□□ -1.81
SMAD4-211ENST00000590499 KTN1-AS1Q86SY8 53 aa3.73□□□□□ -1.81
SMAD4-211ENST00000590499 AHNAK2Q8IVF2 5795 aa3.7□□□□□ -1.82
SMAD4-211ENST00000590499 CDC42SE1Q9NRR8 79 aa3.67□□□□□ -1.82
SMAD4-211ENST00000590499 ROMO1P60602 79 aa3.62□□□□□ -1.83
SMAD4-211ENST00000590499 SYNE1Q8NF91 8797 aaKnown RBP3.57□□□□□ -1.84
SMAD4-211ENST00000590499 BRK1Q8WUW1 75 aa3.56□□□□□ -1.84
SMAD4-211ENST00000590499 KRTAP20-2Q3LI61 65 aa3.54□□□□□ -1.84
SMAD4-211ENST00000590499 SPRR5A0A1B0GTR4 108 aa3.53□□□□□ -1.84
SMAD4-211ENST00000590499 KRTAP5-10Q6L8G5 202 aa3.51□□□□□ -1.85
SMAD4-211ENST00000590499 KRTAP12-4P60329 112 aa3.49□□□□□ -1.85
SMAD4-211ENST00000590499 MT1AP04731 61 aa3.4□□□□□ -1.87
SMAD4-211ENST00000590499 KRTAP6-1Q3LI64 71 aa3.38□□□□□ -1.87
SMAD4-211ENST00000590499 LCE3DQ9BYE3 92 aa3.38□□□□□ -1.87
SMAD4-211ENST00000590499 KRTAP5-7Q6L8G8 165 aa3.36□□□□□ -1.87
SMAD4-211ENST00000590499 MUC19Q7Z5P9 8384 aa3.34□□□□□ -1.87
SMAD4-211ENST00000590499 KRTAP6-2Q3LI66 62 aa3.21□□□□□ -1.9
SMAD4-211ENST00000590499 AHNAKQ09666 5890 aaKnown RBP3.04□□□□□ -1.92
SMAD4-211ENST00000590499 MUC5BQ9HC84 5762 aaPredicted RBP3.04□□□□□ -1.92
SMAD4-211ENST00000590499 MUC5ACP98088 5654 aa3□□□□□ -1.93
SMAD4-211ENST00000590499 KRTAP21-2Q3LI59 83 aa2.86□□□□□ -1.95
SMAD4-211ENST00000590499 INE1O15225 51 aa2.72□□□□□ -1.97
SMAD4-211ENST00000590499 PHGR1C9JFL3 82 aa2.06□□□□□ -2.08
SMAD4-211ENST00000590499 PRM1P04553 51 aa1.86□□□□□ -2.11
SMAD4-211ENST00000590499 KRTAP21-1Q3LI58 79 aa1.53□□□□□ -2.16
SMAD4-211ENST00000590499 MUC16Q8WXI7 14507 aa1.36□□□□□ -2.19
Retrieved 78 of 20,778 RNA–protein pairs in 115.2 ms