RNA–Protein interactions for RNA: ENST00000589318.5

DDX39A-209, Transcript of DExD-box helicase 39A, human

TSL 1 (best)

Gene DDX39A, Length 1,903 nt, Biotype retained intron, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
DDX39A-209	ENST00000589318	MUC12	Q9UKN1	5478 aa		5.43	□□□□□ -1.54
DDX39A-209	ENST00000589318	LCE3C	Q5T5A8	94 aa		5.4	□□□□□ -1.54
DDX39A-209	ENST00000589318	SPRR2F	Q96RM1	72 aa		5.37	□□□□□ -1.55
DDX39A-209	ENST00000589318	SYNE2	Q8WXH0	6885 aa	Known RBP	5.37	□□□□□ -1.55
DDX39A-209	ENST00000589318	KRTAP19-4	Q3LI73	84 aa		5.33	□□□□□ -1.56
DDX39A-209	ENST00000589318	KRTAP4-7	Q9BYR0	210 aa		5.33	□□□□□ -1.56
DDX39A-209	ENST00000589318	KRTAP5-9	P26371	169 aa		5.32	□□□□□ -1.56
DDX39A-209	ENST00000589318	KRTAP19-3	Q7Z4W3	81 aa		5.31	□□□□□ -1.56
DDX39A-209	ENST00000589318	KRTAP2-3	P0C7H8	128 aa		5.3	□□□□□ -1.56
DDX39A-209	ENST00000589318	KRTAP2-4	Q9BYR9	128 aa		5.3	□□□□□ -1.56
DDX39A-209	ENST00000589318	KRTAP2-1	Q9BYU5	128 aa		5.3	□□□□□ -1.56
DDX39A-209	ENST00000589318	KRTAP9-1	A8MXZ3	250 aa	Predicted RBP	5.28	□□□□□ -1.56
DDX39A-209	ENST00000589318	MT1G	P13640	62 aa		5.25	□□□□□ -1.57
DDX39A-209	ENST00000589318	LCE5A	Q5TCM9	118 aa		5.23	□□□□□ -1.57
DDX39A-209	ENST00000589318	MDN1	Q9NU22	5596 aa		5.22	□□□□□ -1.57
DDX39A-209	ENST00000589318	MT1M	Q8N339	61 aa		5.22	□□□□□ -1.57
DDX39A-209	ENST00000589318	KRTAP9-6	A8MVA2	160 aa		5.18	□□□□□ -1.58
DDX39A-209	ENST00000589318	KRTAP6-3	Q3LI67	103 aa		5.16	□□□□□ -1.58
DDX39A-209	ENST00000589318	LCE1A	Q5T7P2	110 aa		5.16	□□□□□ -1.58
DDX39A-209	ENST00000589318	KRTAP4-3	Q9BYR4	195 aa		5.16	□□□□□ -1.58
DDX39A-209	ENST00000589318	SPRR2E	P22531	72 aa		5.07	□□□□□ -1.6
DDX39A-209	ENST00000589318	SPRR2B	P35325	72 aa		5.07	□□□□□ -1.6
DDX39A-209	ENST00000589318	SPRR2A	P35326	72 aa		5.07	□□□□□ -1.6
DDX39A-209	ENST00000589318	DST	Q03001	7570 aa	Known RBP	5.01	□□□□□ -1.61
DDX39A-209	ENST00000589318	LOC100996750	A0A140TA64	210 aa		4.99	□□□□□ -1.61
DDX39A-209	ENST00000589318	KRTAP9-7	A8MTY7	169 aa		4.97	□□□□□ -1.61
DDX39A-209	ENST00000589318	SPRR2D	P22532	72 aa		4.87	□□□□□ -1.63
DDX39A-209	ENST00000589318	NEB	P20929	6669 aa		4.82	□□□□□ -1.64
DDX39A-209	ENST00000589318	KRTAP5-5	Q701N2	237 aa	Predicted RBP	4.73	□□□□□ -1.65
DDX39A-209	ENST00000589318	KRTAP12-4	P60329	112 aa		4.72	□□□□□ -1.65
DDX39A-209	ENST00000589318	LCE3B	Q5TA77	95 aa		4.69	□□□□□ -1.66
DDX39A-209	ENST00000589318	MT1A	P04731	61 aa		4.61	□□□□□ -1.67
DDX39A-209	ENST00000589318	KRTAP6-1	Q3LI64	71 aa		4.6	□□□□□ -1.67
DDX39A-209	ENST00000589318	SYNE1	Q8NF91	8797 aa	Known RBP	4.48	□□□□□ -1.69
DDX39A-209	ENST00000589318	KRTAP5-4	Q6L8H1	288 aa		4.47	□□□□□ -1.69
DDX39A-209	ENST00000589318	KRTAP2-2	Q9BYT5	123 aa		4.4	□□□□□ -1.71
DDX39A-209	ENST00000589318	KRTAP9-4	Q9BYQ2	154 aa		4.38	□□□□□ -1.71
DDX39A-209	ENST00000589318	KRTAP20-1	Q3LI63	56 aa		4.37	□□□□□ -1.71
DDX39A-209	ENST00000589318	LCE4A	Q5TA78	99 aa		4.32	□□□□□ -1.72
DDX39A-209	ENST00000589318	LCE3E	Q5T5B0	92 aa		4.27	□□□□□ -1.73
DDX39A-209	ENST00000589318	KRTAP4-6	Q9BYQ5	205 aa		4.26	□□□□□ -1.73
DDX39A-209	ENST00000589318	KRTAP4-9	Q9BYQ8	210 aa		4.26	□□□□□ -1.73
DDX39A-209	ENST00000589318	MT4	P47944	62 aa		4.25	□□□□□ -1.73
DDX39A-209	ENST00000589318	LCE3D	Q9BYE3	92 aa		4.25	□□□□□ -1.73
DDX39A-209	ENST00000589318	PRM1	P04553	51 aa		4.22	□□□□□ -1.73
DDX39A-209	ENST00000589318	KRTAP6-2	Q3LI66	62 aa		4.21	□□□□□ -1.74
DDX39A-209	ENST00000589318	LCE1D	Q5T752	114 aa		4.19	□□□□□ -1.74
DDX39A-209	ENST00000589318	KRTAP20-2	Q3LI61	65 aa		4.17	□□□□□ -1.74
DDX39A-209	ENST00000589318	HMCN1	Q96RW7	5635 aa		4.16	□□□□□ -1.74
DDX39A-209	ENST00000589318	MT3	P25713	68 aa		4.15	□□□□□ -1.74
DDX39A-209	ENST00000589318	KRTAP5-2	Q701N4	177 aa		4.07	□□□□□ -1.76
DDX39A-209	ENST00000589318	KRTAP5-3	Q6L8H2	238 aa		4.03	□□□□□ -1.76
DDX39A-209	ENST00000589318	OBSCN	Q5VST9	7968 aa		3.93	□□□□□ -1.78
DDX39A-209	ENST00000589318	GPR98	Q8WXG9	6306 aa		3.79	□□□□□ -1.8
DDX39A-209	ENST00000589318	LCE1F	Q5T754	118 aa		3.73	□□□□□ -1.81
DDX39A-209	ENST00000589318	AHNAK2	Q8IVF2	5795 aa		3.65	□□□□□ -1.83
DDX39A-209	ENST00000589318	LCE1E	Q5T753	118 aa		3.62	□□□□□ -1.83
DDX39A-209	ENST00000589318	KRTAP4-11	Q9BYQ6	195 aa		3.59	□□□□□ -1.83
DDX39A-209	ENST00000589318	KRTAP5-1	Q6L8H4	278 aa		3.52	□□□□□ -1.85
DDX39A-209	ENST00000589318	KRTAP5-8	O75690	187 aa		3.47	□□□□□ -1.85
DDX39A-209	ENST00000589318	KRTAP5-10	Q6L8G5	202 aa		3.44	□□□□□ -1.86
DDX39A-209	ENST00000589318	MUC5AC	P98088	5654 aa		3.44	□□□□□ -1.86
DDX39A-209	ENST00000589318	KRTAP4-2	Q9BYR5	136 aa		3.4	□□□□□ -1.86
DDX39A-209	ENST00000589318	KRTAP9-9	Q9BYP9	154 aa		3.39	□□□□□ -1.87
DDX39A-209	ENST00000589318	LCE1B	Q5T7P3	118 aa		3.38	□□□□□ -1.87
DDX39A-209	ENST00000589318	KRTAP5-7	Q6L8G8	165 aa		3.37	□□□□□ -1.87
DDX39A-209	ENST00000589318	LCE1C	Q5T751	118 aa		3.36	□□□□□ -1.87
DDX39A-209	ENST00000589318	KRTAP5-6	Q6L8G9	129 aa	Predicted RBP	3.17	□□□□□ -1.9
DDX39A-209	ENST00000589318	KRTAP21-2	Q3LI59	83 aa		3.02	□□□□□ -1.93
DDX39A-209	ENST00000589318	MUC5B	Q9HC84	5762 aa	Predicted RBP	3	□□□□□ -1.93
DDX39A-209	ENST00000589318	KRTAP5-11	Q6L8G4	156 aa		2.97	□□□□□ -1.93
DDX39A-209	ENST00000589318	AHNAK	Q09666	5890 aa	Known RBP	2.92	□□□□□ -1.94
DDX39A-209	ENST00000589318	KRTAP21-1	Q3LI58	79 aa		2.8	□□□□□ -1.96
DDX39A-209	ENST00000589318	KRTAP4-12	Q9BQ66	201 aa		2.8	□□□□□ -1.96
DDX39A-209	ENST00000589318	KRTAP4-4	Q9BYR3	166 aa		2.68	□□□□□ -1.98
DDX39A-209	ENST00000589318	PHGR1	C9JFL3	82 aa		2.56	□□□□□ -2
DDX39A-209	ENST00000589318	MUC19	Q7Z5P9	8384 aa		2.33	□□□□□ -2.04
DDX39A-209	ENST00000589318	MUC16	Q8WXI7	14507 aa		1.68	□□□□□ -2.14

Retrieved 78 of 20,778 RNA–protein pairs in 629.6 ms