RNA–Protein interactions for RNA: ENST00000586407.1

LIG3-208, Transcript of DNA ligase 3, humanhuman

TSL 5

Gene LIG3, Length 815 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-208ENST00000586407 KRTAP4-3Q9BYR4 195 aa9.85□□□□□ -0.83
LIG3-208ENST00000586407 MIR22HGQ0VDD5 57 aa9.7□□□□□ -0.86
LIG3-208ENST00000586407 LCE1DQ5T752 114 aa9.68□□□□□ -0.86
LIG3-208ENST00000586407 KRTAP12-3P60328 96 aa9.67□□□□□ -0.86
LIG3-208ENST00000586407 KRTAP4-7Q9BYR0 210 aa9.62□□□□□ -0.87
LIG3-208ENST00000586407 MT4P47944 62 aa9.61□□□□□ -0.87
LIG3-208ENST00000586407 LCE4AQ5TA78 99 aa9.61□□□□□ -0.87
LIG3-208ENST00000586407 PSPHP1O15172 72 aa9.58□□□□□ -0.88
LIG3-208ENST00000586407 GPR98Q8WXG9 6306 aa9.53□□□□□ -0.88
LIG3-208ENST00000586407 KRTAP25-1Q3LHN0 102 aa9.49□□□□□ -0.89
LIG3-208ENST00000586407 KRTAP5-4Q6L8H1 288 aa9.45□□□□□ -0.9
LIG3-208ENST00000586407 V9GYY9 64 aa9.45□□□□□ -0.9
LIG3-208ENST00000586407 K7ERS5 55 aa9.44□□□□□ -0.9
LIG3-208ENST00000586407 Q1T7F1 81 aa9.44□□□□□ -0.9
LIG3-208ENST00000586407 HMCN1Q96RW7 5635 aa9.4□□□□□ -0.9
LIG3-208ENST00000586407 KRTAP4-6Q9BYQ5 205 aa9.34□□□□□ -0.91
LIG3-208ENST00000586407 A6NED7 52 aa9.21□□□□□ -0.94
LIG3-208ENST00000586407 AHNAK2Q8IVF2 5795 aa9.13□□□□□ -0.95
LIG3-208ENST00000586407 KRTAP5-5Q701N2 237 aaPredicted RBP9.12□□□□□ -0.95
LIG3-208ENST00000586407 LOC100996750A0A140TA64 210 aa9.11□□□□□ -0.95
LIG3-208ENST00000586407 KRTAP23-1A1A580 65 aa9.05□□□□□ -0.96
LIG3-208ENST00000586407 KRTAP15-1Q3LI76 137 aa9.03□□□□□ -0.96
LIG3-208ENST00000586407 CDC42SE1Q9NRR8 79 aa8.98□□□□□ -0.97
LIG3-208ENST00000586407 KRTAP20-2Q3LI61 65 aa8.95□□□□□ -0.98
LIG3-208ENST00000586407 KRTAP5-10Q6L8G5 202 aa8.95□□□□□ -0.98
LIG3-208ENST00000586407 KRTAP19-4Q3LI73 84 aa8.92□□□□□ -0.98
LIG3-208ENST00000586407 LCE3CQ5T5A8 94 aa8.9□□□□□ -0.98
LIG3-208ENST00000586407 RPS28P62857 69 aaKnown RBP8.88□□□□□ -0.99
LIG3-208ENST00000586407 ROMO1P60602 79 aa8.87□□□□□ -0.99
LIG3-208ENST00000586407 SPRR5A0A1B0GTR4 108 aa8.84□□□□□ -0.99
LIG3-208ENST00000586407 KRTAP12-4P60329 112 aa8.83□□□□□ -1
LIG3-208ENST00000586407 PCP4P48539 62 aa8.81□□□□□ -1
LIG3-208ENST00000586407 SYNE1Q8NF91 8797 aaKnown RBP8.78□□□□□ -1
LIG3-208ENST00000586407 KRTAP5-3Q6L8H2 238 aa8.77□□□□□ -1.01
LIG3-208ENST00000586407 KRTAP5-7Q6L8G8 165 aa8.57□□□□□ -1.04
LIG3-208ENST00000586407 MT1AP04731 61 aa8.51□□□□□ -1.05
LIG3-208ENST00000586407 KRTAP6-1Q3LI64 71 aa8.5□□□□□ -1.05
LIG3-208ENST00000586407 KRTAP9-6A8MVA2 160 aa8.49□□□□□ -1.05
LIG3-208ENST00000586407 KRTAP5-2Q701N4 177 aa8.29□□□□□ -1.08
LIG3-208ENST00000586407 KRTAP9-4Q9BYQ2 154 aa8.2□□□□□ -1.1
LIG3-208ENST00000586407 KRTAP4-11Q9BYQ6 195 aa8.15□□□□□ -1.1
LIG3-208ENST00000586407 KRTAP6-2Q3LI66 62 aa8.11□□□□□ -1.11
LIG3-208ENST00000586407 KRTAP5-8O75690 187 aa7.9□□□□□ -1.14
LIG3-208ENST00000586407 BRK1Q8WUW1 75 aa7.88□□□□□ -1.15
LIG3-208ENST00000586407 MT3P25713 68 aa7.74□□□□□ -1.17
LIG3-208ENST00000586407 OBSCNQ5VST9 7968 aa7.66□□□□□ -1.18
LIG3-208ENST00000586407 AHNAKQ09666 5890 aaKnown RBP7.48□□□□□ -1.21
LIG3-208ENST00000586407 MUC5ACP98088 5654 aa7.46□□□□□ -1.21
LIG3-208ENST00000586407 KRTAP5-1Q6L8H4 278 aa7.44□□□□□ -1.22
LIG3-208ENST00000586407 KRTAP9-9Q9BYP9 154 aa7.44□□□□□ -1.22
LIG3-208ENST00000586407 MUC5BQ9HC84 5762 aaPredicted RBP7.43□□□□□ -1.22
LIG3-208ENST00000586407 PMAIP1Q13794 54 aa7.36□□□□□ -1.23
LIG3-208ENST00000586407 PRAC1Q96KF2 57 aa7.25□□□□□ -1.25
LIG3-208ENST00000586407 LCE1EQ5T753 118 aa7.06□□□□□ -1.28
LIG3-208ENST00000586407 LCE1BQ5T7P3 118 aa6.78□□□□□ -1.32
LIG3-208ENST00000586407 KRTAP4-2Q9BYR5 136 aa6.77□□□□□ -1.33
LIG3-208ENST00000586407 PRO0628Q9UI54 55 aa6.7□□□□□ -1.34
LIG3-208ENST00000586407 LCE1CQ5T751 118 aa6.57□□□□□ -1.36
LIG3-208ENST00000586407 KTN1-AS1Q86SY8 53 aa6.46□□□□□ -1.38
LIG3-208ENST00000586407 LCE3DQ9BYE3 92 aa6.39□□□□□ -1.39
LIG3-208ENST00000586407 SVIPQ8NHG7 77 aa6.3□□□□□ -1.4
LIG3-208ENST00000586407 KRTAP4-12Q9BQ66 201 aa6.2□□□□□ -1.42
LIG3-208ENST00000586407 LCE3EQ5T5B0 92 aa6.02□□□□□ -1.45
LIG3-208ENST00000586407 KRTAP5-11Q6L8G4 156 aa5.97□□□□□ -1.45
LIG3-208ENST00000586407 KRTAP5-6Q6L8G9 129 aaPredicted RBP5.97□□□□□ -1.45
LIG3-208ENST00000586407 LUZP6Q538Z0 58 aa5.96□□□□□ -1.46
LIG3-208ENST00000586407 LCE1FQ5T754 118 aa5.73□□□□□ -1.49
LIG3-208ENST00000586407 KRTAP21-2Q3LI59 83 aa5.58□□□□□ -1.52
LIG3-208ENST00000586407 PHGR1C9JFL3 82 aa5.23□□□□□ -1.57
LIG3-208ENST00000586407 KRTAP4-4Q9BYR3 166 aa5.2□□□□□ -1.58
LIG3-208ENST00000586407 NDUFAF8A1L188 74 aa4.77□□□□□ -1.65
LIG3-208ENST00000586407 MUC19Q7Z5P9 8384 aa4.76□□□□□ -1.65
LIG3-208ENST00000586407 PRM1P04553 51 aa4.58□□□□□ -1.68
LIG3-208ENST00000586407 H3BS24 57 aa4.05□□□□□ -1.76
LIG3-208ENST00000586407 KRTAP21-1Q3LI58 79 aa3.91□□□□□ -1.78
LIG3-208ENST00000586407 A0A0A0MQY5 61 aa3.82□□□□□ -1.8
LIG3-208ENST00000586407 INE1O15225 51 aa3.72□□□□□ -1.81
LIG3-208ENST00000586407 MUC16Q8WXI7 14507 aa3.37□□□□□ -1.87
Retrieved 78 of 20,778 RNA–protein pairs in 53.8 ms