RNA–Protein interactions for RNA: ENST00000581570.5

SS18-219, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 5

Gene SS18, Length 571 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-219ENST00000581570 KRTAP12-4P60329 112 aa4.25□□□□□ -1.73
SS18-219ENST00000581570 SPINT4Q6UDR6 99 aa4.25□□□□□ -1.73
SS18-219ENST00000581570 LCE3AQ5TA76 89 aa4.22□□□□□ -1.73
SS18-219ENST00000581570 KRTAP5-5Q701N2 237 aaPredicted RBP4.22□□□□□ -1.73
SS18-219ENST00000581570 LCE1EQ5T753 118 aa4.2□□□□□ -1.74
SS18-219ENST00000581570 SPATA8Q6RVD6 105 aa4.16□□□□□ -1.74
SS18-219ENST00000581570 KRTAP12-1P59990 96 aa4.15□□□□□ -1.75
SS18-219ENST00000581570 KRTAP5-11Q6L8G4 156 aa4.14□□□□□ -1.75
SS18-219ENST00000581570 SYNE1Q8NF91 8797 aaKnown RBP4.13□□□□□ -1.75
SS18-219ENST00000581570 TNP1P09430 55 aa4.09□□□□□ -1.75
SS18-219ENST00000581570 SERP1Q9Y6X1 66 aa4.09□□□□□ -1.75
SS18-219ENST00000581570 SEC61GP60059 68 aa4.07□□□□□ -1.76
SS18-219ENST00000581570 AHNAKQ09666 5890 aaKnown RBP4.06□□□□□ -1.76
SS18-219ENST00000581570 KRTAP12-3P60328 96 aa4.05□□□□□ -1.76
SS18-219ENST00000581570 A0A1B0GU33 70 aa4.04□□□□□ -1.76
SS18-219ENST00000581570 MUC5ACP98088 5654 aa4.03□□□□□ -1.76
SS18-219ENST00000581570 KRTAP5-6Q6L8G9 129 aaPredicted RBP4.03□□□□□ -1.76
SS18-219ENST00000581570 PCP4L1A6NKN8 68 aa4.02□□□□□ -1.77
SS18-219ENST00000581570 SPANXA2-OT1Q8N9U9 137 aa4.02□□□□□ -1.77
SS18-219ENST00000581570 KRTAP5-8O75690 187 aa4.01□□□□□ -1.77
SS18-219ENST00000581570 SNURFQ9Y675 71 aa4.01□□□□□ -1.77
SS18-219ENST00000581570 MUC5BQ9HC84 5762 aaPredicted RBP4.01□□□□□ -1.77
SS18-219ENST00000581570 SMIM20Q8N5G0 67 aa4□□□□□ -1.77
SS18-219ENST00000581570 LCE1FQ5T754 118 aa3.95□□□□□ -1.78
SS18-219ENST00000581570 KRTAP5-2Q701N4 177 aa3.95□□□□□ -1.78
SS18-219ENST00000581570 COA5Q86WW8 74 aa3.95□□□□□ -1.78
SS18-219ENST00000581570 SMIM26A0A096LP01 95 aa3.94□□□□□ -1.78
SS18-219ENST00000581570 NDUFAF8A1L188 74 aa3.93□□□□□ -1.78
SS18-219ENST00000581570 PRAC1Q96KF2 57 aa3.93□□□□□ -1.78
SS18-219ENST00000581570 A8MU10 97 aa3.91□□□□□ -1.78
SS18-219ENST00000581570 J3QR89 54 aa3.91□□□□□ -1.78
SS18-219ENST00000581570 KRTAP6-1Q3LI64 71 aa3.81□□□□□ -1.8
SS18-219ENST00000581570 MT1AP04731 61 aa3.8□□□□□ -1.8
SS18-219ENST00000581570 SERP2Q8N6R1 65 aa3.78□□□□□ -1.8
SS18-219ENST00000581570 A0A1B0GU69 56 aa3.77□□□□□ -1.81
SS18-219ENST00000581570 OBSCNQ5VST9 7968 aa3.77□□□□□ -1.81
SS18-219ENST00000581570 A0A1B0GV90 55 aa3.75□□□□□ -1.81
SS18-219ENST00000581570 LCE3CQ5T5A8 94 aa3.74□□□□□ -1.81
SS18-219ENST00000581570 KRTAP9-6A8MVA2 160 aa3.73□□□□□ -1.81
SS18-219ENST00000581570 KRTAP6-2Q3LI66 62 aa3.73□□□□□ -1.81
SS18-219ENST00000581570 KRTAP25-1Q3LHN0 102 aa3.69□□□□□ -1.82
SS18-219ENST00000581570 KRTAP5-1Q6L8H4 278 aa3.64□□□□□ -1.83
SS18-219ENST00000581570 H7BZZ5 65 aa3.52□□□□□ -1.85
SS18-219ENST00000581570 K7ERU9 68 aa3.52□□□□□ -1.85
SS18-219ENST00000581570 PRR15LQ9BU68 103 aa3.51□□□□□ -1.85
SS18-219ENST00000581570 COX7CP15954 63 aa3.46□□□□□ -1.86
SS18-219ENST00000581570 LCE3EQ5T5B0 92 aa3.4□□□□□ -1.87
SS18-219ENST00000581570 UQCR11O14957 56 aa3.38□□□□□ -1.87
SS18-219ENST00000581570 LINC01558Q9Y6Z2 57 aa3.37□□□□□ -1.87
SS18-219ENST00000581570 KRTAP4-4Q9BYR3 166 aa3.35□□□□□ -1.87
SS18-219ENST00000581570 K7ERS5 55 aa3.3□□□□□ -1.88
SS18-219ENST00000581570 MIR22HGQ0VDD5 57 aa3.27□□□□□ -1.89
SS18-219ENST00000581570 RPS28P62857 69 aaKnown RBP3.19□□□□□ -1.9
SS18-219ENST00000581570 LCE1BQ5T7P3 118 aa3.19□□□□□ -1.9
SS18-219ENST00000581570 ATP5EP56381 51 aaPredicted RBP3.14□□□□□ -1.91
SS18-219ENST00000581570 LCE1CQ5T751 118 aa3.08□□□□□ -1.92
SS18-219ENST00000581570 ANAPC13Q9BS18 74 aa3.07□□□□□ -1.92
SS18-219ENST00000581570 CDC42SE1Q9NRR8 79 aa3.05□□□□□ -1.92
SS18-219ENST00000581570 CCDC179H3BU77 68 aa3.04□□□□□ -1.92
SS18-219ENST00000581570 Q1T7F1 81 aa3.02□□□□□ -1.93
SS18-219ENST00000581570 ROMO1P60602 79 aa2.98□□□□□ -1.93
SS18-219ENST00000581570 PSPHP1O15172 72 aa2.94□□□□□ -1.94
SS18-219ENST00000581570 TMEM258P61165 79 aa2.87□□□□□ -1.95
SS18-219ENST00000581570 V9GYY9 64 aa2.85□□□□□ -1.95
SS18-219ENST00000581570 PHGR1C9JFL3 82 aa2.82□□□□□ -1.96
SS18-219ENST00000581570 A6NED7 52 aa2.81□□□□□ -1.96
SS18-219ENST00000581570 LCE3DQ9BYE3 92 aa2.77□□□□□ -1.97
SS18-219ENST00000581570 KRTAP21-2Q3LI59 83 aa2.51□□□□□ -2.01
SS18-219ENST00000581570 MUC19Q7Z5P9 8384 aa2.37□□□□□ -2.03
SS18-219ENST00000581570 KRTAP21-1Q3LI58 79 aa2.15□□□□□ -2.07
SS18-219ENST00000581570 LUZP6Q538Z0 58 aa2.03□□□□□ -2.08
SS18-219ENST00000581570 BRK1Q8WUW1 75 aa1.87□□□□□ -2.11
SS18-219ENST00000581570 PRO0628Q9UI54 55 aa1.77□□□□□ -2.13
SS18-219ENST00000581570 PMAIP1Q13794 54 aa1.69□□□□□ -2.14
SS18-219ENST00000581570 MUC16Q8WXI7 14507 aa1.65□□□□□ -2.14
SS18-219ENST00000581570 PRM1P04553 51 aa1.49□□□□□ -2.17
SS18-219ENST00000581570 KTN1-AS1Q86SY8 53 aa1.14□□□□□ -2.23
SS18-219ENST00000581570 INE1O15225 51 aa0.57□□□□□ -2.32
Retrieved 78 of 20,778 RNA–protein pairs in 82.5 ms