RNA–Protein interactions for RNA: ENST00000580540.1

SREBF1-219, Transcript of sterol regulatory element binding transcription factor 1, humanhuman

TSL 4

Gene SREBF1, Length 540 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SREBF1-219ENST00000580540 MIR22HGQ0VDD5 57 aa5.9□□□□□ -1.46
SREBF1-219ENST00000580540 MT1MQ8N339 61 aa5.89□□□□□ -1.47
SREBF1-219ENST00000580540 RPS28P62857 69 aaKnown RBP5.84□□□□□ -1.47
SREBF1-219ENST00000580540 KRTAP4-9Q9BYQ8 210 aa5.84□□□□□ -1.47
SREBF1-219ENST00000580540 PSPHP1O15172 72 aa5.83□□□□□ -1.48
SREBF1-219ENST00000580540 V9GYY9 64 aa5.82□□□□□ -1.48
SREBF1-219ENST00000580540 K7ERS5 55 aa5.8□□□□□ -1.48
SREBF1-219ENST00000580540 KRTAP12-3P60328 96 aa5.78□□□□□ -1.48
SREBF1-219ENST00000580540 KRTAP4-3Q9BYR4 195 aa5.78□□□□□ -1.48
SREBF1-219ENST00000580540 Q1T7F1 81 aa5.75□□□□□ -1.49
SREBF1-219ENST00000580540 KRTAP25-1Q3LHN0 102 aa5.72□□□□□ -1.49
SREBF1-219ENST00000580540 LCE1DQ5T752 114 aa5.67□□□□□ -1.5
SREBF1-219ENST00000580540 KRTAP4-7Q9BYR0 210 aa5.67□□□□□ -1.5
SREBF1-219ENST00000580540 MT4P47944 62 aa5.66□□□□□ -1.5
SREBF1-219ENST00000580540 LCE4AQ5TA78 99 aa5.66□□□□□ -1.5
SREBF1-219ENST00000580540 A6NED7 52 aa5.64□□□□□ -1.51
SREBF1-219ENST00000580540 GPR98Q8WXG9 6306 aa5.63□□□□□ -1.51
SREBF1-219ENST00000580540 HMCN1Q96RW7 5635 aa5.57□□□□□ -1.52
SREBF1-219ENST00000580540 KRTAP5-4Q6L8H1 288 aa5.54□□□□□ -1.52
SREBF1-219ENST00000580540 PRO0628Q9UI54 55 aa5.52□□□□□ -1.53
SREBF1-219ENST00000580540 CDC42SE1Q9NRR8 79 aa5.48□□□□□ -1.53
SREBF1-219ENST00000580540 KRTAP4-6Q9BYQ5 205 aa5.47□□□□□ -1.53
SREBF1-219ENST00000580540 KRTAP23-1A1A580 65 aa5.46□□□□□ -1.54
SREBF1-219ENST00000580540 KRTAP15-1Q3LI76 137 aa5.41□□□□□ -1.54
SREBF1-219ENST00000580540 AHNAK2Q8IVF2 5795 aa5.39□□□□□ -1.55
SREBF1-219ENST00000580540 ROMO1P60602 79 aa5.39□□□□□ -1.55
SREBF1-219ENST00000580540 KRTAP19-4Q3LI73 84 aa5.38□□□□□ -1.55
SREBF1-219ENST00000580540 LOC100996750A0A140TA64 210 aa5.37□□□□□ -1.55
SREBF1-219ENST00000580540 BRK1Q8WUW1 75 aa5.36□□□□□ -1.55
SREBF1-219ENST00000580540 KRTAP5-5Q701N2 237 aaPredicted RBP5.35□□□□□ -1.55
SREBF1-219ENST00000580540 LCE3CQ5T5A8 94 aa5.31□□□□□ -1.56
SREBF1-219ENST00000580540 KRTAP12-4P60329 112 aa5.26□□□□□ -1.57
SREBF1-219ENST00000580540 KRTAP20-2Q3LI61 65 aa5.26□□□□□ -1.57
SREBF1-219ENST00000580540 SPRR5A0A1B0GTR4 108 aa5.22□□□□□ -1.57
SREBF1-219ENST00000580540 KRTAP5-10Q6L8G5 202 aa5.21□□□□□ -1.58
SREBF1-219ENST00000580540 SYNE1Q8NF91 8797 aaKnown RBP5.21□□□□□ -1.58
SREBF1-219ENST00000580540 PMAIP1Q13794 54 aa5.17□□□□□ -1.58
SREBF1-219ENST00000580540 KRTAP5-3Q6L8H2 238 aa5.12□□□□□ -1.59
SREBF1-219ENST00000580540 KTN1-AS1Q86SY8 53 aa5.06□□□□□ -1.6
SREBF1-219ENST00000580540 MT1AP04731 61 aa5.03□□□□□ -1.6
SREBF1-219ENST00000580540 KRTAP6-1Q3LI64 71 aa5.02□□□□□ -1.61
SREBF1-219ENST00000580540 KRTAP9-6A8MVA2 160 aa5□□□□□ -1.61
SREBF1-219ENST00000580540 KRTAP5-7Q6L8G8 165 aa4.99□□□□□ -1.61
SREBF1-219ENST00000580540 KRTAP9-4Q9BYQ2 154 aa4.87□□□□□ -1.63
SREBF1-219ENST00000580540 KRTAP5-2Q701N4 177 aa4.86□□□□□ -1.63
SREBF1-219ENST00000580540 KRTAP6-2Q3LI66 62 aa4.79□□□□□ -1.64
SREBF1-219ENST00000580540 KRTAP4-11Q9BYQ6 195 aa4.79□□□□□ -1.64
SREBF1-219ENST00000580540 PRAC1Q96KF2 57 aa4.68□□□□□ -1.66
SREBF1-219ENST00000580540 MT3P25713 68 aa4.62□□□□□ -1.67
SREBF1-219ENST00000580540 KRTAP5-8O75690 187 aa4.61□□□□□ -1.67
SREBF1-219ENST00000580540 OBSCNQ5VST9 7968 aa4.56□□□□□ -1.68
SREBF1-219ENST00000580540 AHNAKQ09666 5890 aaKnown RBP4.44□□□□□ -1.7
SREBF1-219ENST00000580540 H3BS24 57 aa4.41□□□□□ -1.7
SREBF1-219ENST00000580540 MUC5BQ9HC84 5762 aaPredicted RBP4.41□□□□□ -1.7
SREBF1-219ENST00000580540 KRTAP9-9Q9BYP9 154 aa4.4□□□□□ -1.71
SREBF1-219ENST00000580540 MUC5ACP98088 5654 aa4.36□□□□□ -1.71
SREBF1-219ENST00000580540 KRTAP5-1Q6L8H4 278 aa4.35□□□□□ -1.71
SREBF1-219ENST00000580540 LCE1EQ5T753 118 aa4.18□□□□□ -1.74
SREBF1-219ENST00000580540 LCE1BQ5T7P3 118 aa4.03□□□□□ -1.76
SREBF1-219ENST00000580540 NDUFAF8A1L188 74 aa4.01□□□□□ -1.77
SREBF1-219ENST00000580540 KRTAP4-2Q9BYR5 136 aa3.96□□□□□ -1.78
SREBF1-219ENST00000580540 LCE1CQ5T751 118 aa3.88□□□□□ -1.79
SREBF1-219ENST00000580540 LCE3DQ9BYE3 92 aa3.85□□□□□ -1.79
SREBF1-219ENST00000580540 LUZP6Q538Z0 58 aa3.78□□□□□ -1.8
SREBF1-219ENST00000580540 A0A0A0MQY5 61 aa3.72□□□□□ -1.81
SREBF1-219ENST00000580540 KRTAP4-12Q9BQ66 201 aa3.64□□□□□ -1.83
SREBF1-219ENST00000580540 LCE3EQ5T5B0 92 aa3.63□□□□□ -1.83
SREBF1-219ENST00000580540 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.52□□□□□ -1.85
SREBF1-219ENST00000580540 KRTAP5-11Q6L8G4 156 aa3.5□□□□□ -1.85
SREBF1-219ENST00000580540 LCE1FQ5T754 118 aa3.4□□□□□ -1.87
SREBF1-219ENST00000580540 INE1O15225 51 aa3.38□□□□□ -1.87
SREBF1-219ENST00000580540 KRTAP21-2Q3LI59 83 aa3.28□□□□□ -1.88
SREBF1-219ENST00000580540 PHGR1C9JFL3 82 aa3.07□□□□□ -1.92
SREBF1-219ENST00000580540 KRTAP4-4Q9BYR3 166 aa3.07□□□□□ -1.92
SREBF1-219ENST00000580540 MUC19Q7Z5P9 8384 aa2.84□□□□□ -1.95
SREBF1-219ENST00000580540 PRM1P04553 51 aa2.78□□□□□ -1.96
SREBF1-219ENST00000580540 KRTAP21-1Q3LI58 79 aa2.31□□□□□ -2.04
SREBF1-219ENST00000580540 MUC16Q8WXI7 14507 aa2.02□□□□□ -2.09
Retrieved 78 of 20,778 RNA–protein pairs in 10 ms