RNA–Protein interactions for RNA: ENST00000580095.5

TOP3A-209, Transcript of DNA topoisomerase III alpha, humanhuman

TSL 1 (best)

Gene TOP3A, Length 2,929 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TOP3A-209ENST00000580095 MT1EP04732 61 aa3.64□□□□□ -1.83
TOP3A-209ENST00000580095 MT1LQ93083 61 aa3.63□□□□□ -1.83
TOP3A-209ENST00000580095 DSTQ03001 7570 aaKnown RBP3.58□□□□□ -1.84
TOP3A-209ENST00000580095 KRTAP4-3Q9BYR4 195 aa3.58□□□□□ -1.84
TOP3A-209ENST00000580095 LOC100996750A0A140TA64 210 aa3.54□□□□□ -1.84
TOP3A-209ENST00000580095 KRTAP9-6A0A140TA67 174 aa3.54□□□□□ -1.84
TOP3A-209ENST00000580095 KRTAP2-3P0C7H8 128 aa3.48□□□□□ -1.85
TOP3A-209ENST00000580095 MT1GP13640 62 aa3.48□□□□□ -1.85
TOP3A-209ENST00000580095 KRTAP2-4Q9BYR9 128 aa3.48□□□□□ -1.85
TOP3A-209ENST00000580095 KRTAP2-1Q9BYU5 128 aa3.48□□□□□ -1.85
TOP3A-209ENST00000580095 MACF1Q9UPN3 7388 aaKnown RBP3.43□□□□□ -1.86
TOP3A-209ENST00000580095 MT1MQ8N339 61 aa3.4□□□□□ -1.86
TOP3A-209ENST00000580095 KRTAP19-3Q7Z4W3 81 aa3.39□□□□□ -1.87
TOP3A-209ENST00000580095 KRTAP9-1A8MXZ3 250 aaPredicted RBP3.39□□□□□ -1.87
TOP3A-209ENST00000580095 SPRR2FQ96RM1 72 aa3.38□□□□□ -1.87
TOP3A-209ENST00000580095 SYNE2Q8WXH0 6885 aaKnown RBP3.38□□□□□ -1.87
TOP3A-209ENST00000580095 KRTAP5-9P26371 169 aa3.37□□□□□ -1.87
TOP3A-209ENST00000580095 KRTAP19-4Q3LI73 84 aa3.35□□□□□ -1.87
TOP3A-209ENST00000580095 KRTAP6-3Q3LI67 103 aa3.34□□□□□ -1.87
TOP3A-209ENST00000580095 MDN1Q9NU22 5596 aa3.34□□□□□ -1.87
TOP3A-209ENST00000580095 SYNE1Q8NF91 8797 aaKnown RBP3.32□□□□□ -1.88
TOP3A-209ENST00000580095 LCE5AQ5TCM9 118 aa3.28□□□□□ -1.88
TOP3A-209ENST00000580095 LCE3BQ5TA77 95 aa3.22□□□□□ -1.89
TOP3A-209ENST00000580095 KRTAP9-7A8MTY7 169 aa3.21□□□□□ -1.9
TOP3A-209ENST00000580095 KRTAP4-9Q9BYQ8 210 aa3.2□□□□□ -1.9
TOP3A-209ENST00000580095 KRTAP2-2Q9BYT5 123 aa3.2□□□□□ -1.9
TOP3A-209ENST00000580095 LCE1AQ5T7P2 110 aa3.18□□□□□ -1.9
TOP3A-209ENST00000580095 LCE1FQ5T754 118 aa3.16□□□□□ -1.9
TOP3A-209ENST00000580095 OBSCNQ5VST9 7968 aa3.16□□□□□ -1.9
TOP3A-209ENST00000580095 KRTAP12-4P60329 112 aa3.16□□□□□ -1.9
TOP3A-209ENST00000580095 KRTAP9-4Q9BYQ2 154 aa3.15□□□□□ -1.91
TOP3A-209ENST00000580095 KRTAP6-1Q3LI64 71 aa3.13□□□□□ -1.91
TOP3A-209ENST00000580095 KRTAP4-6Q9BYQ5 205 aa3.12□□□□□ -1.91
TOP3A-209ENST00000580095 SPRR2EP22531 72 aa3.11□□□□□ -1.91
TOP3A-209ENST00000580095 SPRR2BP35325 72 aa3.11□□□□□ -1.91
TOP3A-209ENST00000580095 SPRR2AP35326 72 aa3.11□□□□□ -1.91
TOP3A-209ENST00000580095 LCE1EQ5T753 118 aa3.04□□□□□ -1.92
TOP3A-209ENST00000580095 NEBP20929 6669 aa3.03□□□□□ -1.92
TOP3A-209ENST00000580095 SPRR2DP22532 72 aa3.01□□□□□ -1.93
TOP3A-209ENST00000580095 KRTAP9-9Q9BYP9 154 aa3.01□□□□□ -1.93
TOP3A-209ENST00000580095 MT1AP04731 61 aa3□□□□□ -1.93
TOP3A-209ENST00000580095 LCE4AQ5TA78 99 aa2.99□□□□□ -1.93
TOP3A-209ENST00000580095 KRTAP5-5Q701N2 237 aaPredicted RBP2.96□□□□□ -1.93
TOP3A-209ENST00000580095 LCE3DQ9BYE3 92 aa2.94□□□□□ -1.94
TOP3A-209ENST00000580095 PRM1P04553 51 aa2.91□□□□□ -1.94
TOP3A-209ENST00000580095 LCE1DQ5T752 114 aa2.88□□□□□ -1.95
TOP3A-209ENST00000580095 LCE3EQ5T5B0 92 aa2.87□□□□□ -1.95
TOP3A-209ENST00000580095 KRTAP20-1Q3LI63 56 aa2.86□□□□□ -1.95
TOP3A-209ENST00000580095 KRTAP4-12Q9BQ66 201 aa2.83□□□□□ -1.96
TOP3A-209ENST00000580095 KRTAP6-2Q3LI66 62 aa2.82□□□□□ -1.96
TOP3A-209ENST00000580095 KRTAP5-4Q6L8H1 288 aa2.81□□□□□ -1.96
TOP3A-209ENST00000580095 MT3P25713 68 aa2.71□□□□□ -1.98
TOP3A-209ENST00000580095 MT4P47944 62 aa2.66□□□□□ -1.98
TOP3A-209ENST00000580095 KRTAP20-2Q3LI61 65 aa2.57□□□□□ -2
TOP3A-209ENST00000580095 HMCN1Q96RW7 5635 aa2.55□□□□□ -2
TOP3A-209ENST00000580095 KRTAP5-2Q701N4 177 aa2.54□□□□□ -2
TOP3A-209ENST00000580095 KRTAP5-3Q6L8H2 238 aa2.52□□□□□ -2.01
TOP3A-209ENST00000580095 GPR98Q8WXG9 6306 aa2.48□□□□□ -2.01
TOP3A-209ENST00000580095 KRTAP4-11Q9BYQ6 195 aa2.45□□□□□ -2.02
TOP3A-209ENST00000580095 KRTAP4-2Q9BYR5 136 aa2.43□□□□□ -2.02
TOP3A-209ENST00000580095 MUC19Q7Z5P9 8384 aa2.41□□□□□ -2.02
TOP3A-209ENST00000580095 MUC5ACP98088 5654 aa2.37□□□□□ -2.03
TOP3A-209ENST00000580095 LCE1BQ5T7P3 118 aa2.32□□□□□ -2.04
TOP3A-209ENST00000580095 AHNAK2Q8IVF2 5795 aa2.28□□□□□ -2.04
TOP3A-209ENST00000580095 KRTAP5-10Q6L8G5 202 aa2.26□□□□□ -2.05
TOP3A-209ENST00000580095 MUC5BQ9HC84 5762 aaPredicted RBP2.25□□□□□ -2.05
TOP3A-209ENST00000580095 KRTAP5-7Q6L8G8 165 aa2.18□□□□□ -2.06
TOP3A-209ENST00000580095 KRTAP5-8O75690 187 aa2.18□□□□□ -2.06
TOP3A-209ENST00000580095 KRTAP5-1Q6L8H4 278 aa2.18□□□□□ -2.06
TOP3A-209ENST00000580095 AHNAKQ09666 5890 aaKnown RBP2.16□□□□□ -2.06
TOP3A-209ENST00000580095 LCE1CQ5T751 118 aa2.08□□□□□ -2.08
TOP3A-209ENST00000580095 KRTAP21-2Q3LI59 83 aa1.98□□□□□ -2.09
TOP3A-209ENST00000580095 KRTAP5-6Q6L8G9 129 aaPredicted RBP1.98□□□□□ -2.09
TOP3A-209ENST00000580095 KRTAP4-4Q9BYR3 166 aa1.96□□□□□ -2.1
TOP3A-209ENST00000580095 KRTAP21-1Q3LI58 79 aa1.9□□□□□ -2.11
TOP3A-209ENST00000580095 KRTAP5-11Q6L8G4 156 aa1.86□□□□□ -2.11
TOP3A-209ENST00000580095 PHGR1C9JFL3 82 aa1.58□□□□□ -2.16
TOP3A-209ENST00000580095 MUC16Q8WXI7 14507 aa1.05□□□□□ -2.24
Retrieved 78 of 20,778 RNA–protein pairs in 68 ms