RNA–Protein interactions for RNA: ENST00000579449.1

TSEN54-206, Transcript of tRNA splicing endonuclease subunit 54, humanhuman

TSL 2

Gene TSEN54, Length 786 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TSEN54-206ENST00000579449 KTN1-AS1Q86SY8 53 aa5.23□□□□□ -1.57
TSEN54-206ENST00000579449 MACF1Q9UPN3 7388 aaKnown RBP5.22□□□□□ -1.57
TSEN54-206ENST00000579449 PP632Q6XCG6 107 aa5.22□□□□□ -1.57
TSEN54-206ENST00000579449 SYNE2Q8WXH0 6885 aaKnown RBP5.19□□□□□ -1.58
TSEN54-206ENST00000579449 KRTAP19-5Q3LI72 72 aa5.19□□□□□ -1.58
TSEN54-206ENST00000579449 KRTAP6-3Q3LI67 103 aa5.16□□□□□ -1.58
TSEN54-206ENST00000579449 KRTAP19-7Q3SYF9 63 aa5.16□□□□□ -1.58
TSEN54-206ENST00000579449 KRTAP5-9P26371 169 aa5.14□□□□□ -1.59
TSEN54-206ENST00000579449 SPRR2FQ96RM1 72 aa5.13□□□□□ -1.59
TSEN54-206ENST00000579449 KRTAP4-9Q9BYQ8 210 aa5.13□□□□□ -1.59
TSEN54-206ENST00000579449 KRTAP12-3P60328 96 aa5.12□□□□□ -1.59
TSEN54-206ENST00000579449 MT1EP04732 61 aa5.09□□□□□ -1.59
TSEN54-206ENST00000579449 KRTAP4-7Q9BYR0 210 aa5.07□□□□□ -1.6
TSEN54-206ENST00000579449 KRTAP4-11Q9BYQ6 195 aa5.05□□□□□ -1.6
TSEN54-206ENST00000579449 MUC12Q9UKN1 5478 aa4.96□□□□□ -1.62
TSEN54-206ENST00000579449 LCE1AQ5T7P2 110 aa4.96□□□□□ -1.62
TSEN54-206ENST00000579449 MT1LQ93083 61 aa4.96□□□□□ -1.62
TSEN54-206ENST00000579449 NEBP20929 6669 aa4.95□□□□□ -1.62
TSEN54-206ENST00000579449 SPRR2EP22531 72 aa4.94□□□□□ -1.62
TSEN54-206ENST00000579449 SPRR2BP35325 72 aa4.94□□□□□ -1.62
TSEN54-206ENST00000579449 SPRR2AP35326 72 aa4.94□□□□□ -1.62
TSEN54-206ENST00000579449 KRTAP19-3Q7Z4W3 81 aa4.93□□□□□ -1.62
TSEN54-206ENST00000579449 NDUFAF8A1L188 74 aa4.89□□□□□ -1.63
TSEN54-206ENST00000579449 MT1GP13640 62 aa4.86□□□□□ -1.63
TSEN54-206ENST00000579449 KRTAP4-2Q9BYR5 136 aa4.84□□□□□ -1.63
TSEN54-206ENST00000579449 MDN1Q9NU22 5596 aa4.84□□□□□ -1.64
TSEN54-206ENST00000579449 MT1MQ8N339 61 aa4.8□□□□□ -1.64
TSEN54-206ENST00000579449 KRTAP20-1Q3LI63 56 aa4.79□□□□□ -1.64
TSEN54-206ENST00000579449 LCE3CQ5T5A8 94 aa4.77□□□□□ -1.65
TSEN54-206ENST00000579449 SPRR2DP22532 72 aa4.76□□□□□ -1.65
TSEN54-206ENST00000579449 KRTAP4-3Q9BYR4 195 aa4.71□□□□□ -1.66
TSEN54-206ENST00000579449 MT3P25713 68 aa4.67□□□□□ -1.66
TSEN54-206ENST00000579449 KRTAP2-3P0C7H8 128 aa4.55□□□□□ -1.68
TSEN54-206ENST00000579449 KRTAP2-4Q9BYR9 128 aa4.55□□□□□ -1.68
TSEN54-206ENST00000579449 SPRR5A0A1B0GTR4 108 aa4.54□□□□□ -1.68
TSEN54-206ENST00000579449 GPR98Q8WXG9 6306 aa4.53□□□□□ -1.68
TSEN54-206ENST00000579449 KRTAP5-3Q6L8H2 238 aa4.52□□□□□ -1.69
TSEN54-206ENST00000579449 KRTAP2-2Q9BYT5 123 aa4.51□□□□□ -1.69
TSEN54-206ENST00000579449 KRTAP9-6A8MVA2 160 aa4.5□□□□□ -1.69
TSEN54-206ENST00000579449 DSTQ03001 7570 aaKnown RBP4.47□□□□□ -1.69
TSEN54-206ENST00000579449 KRTAP2-1Q9BYU5 128 aa4.44□□□□□ -1.7
TSEN54-206ENST00000579449 LCE1FQ5T754 118 aa4.4□□□□□ -1.71
TSEN54-206ENST00000579449 KRTAP5-5Q701N2 237 aaPredicted RBP4.35□□□□□ -1.71
TSEN54-206ENST00000579449 LUZP6Q538Z0 58 aa4.28□□□□□ -1.72
TSEN54-206ENST00000579449 KRTAP5-4Q6L8H1 288 aa4.25□□□□□ -1.73
TSEN54-206ENST00000579449 MT1AP04731 61 aa4.22□□□□□ -1.73
TSEN54-206ENST00000579449 KRTAP6-1Q3LI64 71 aa4.18□□□□□ -1.74
TSEN54-206ENST00000579449 MT4P47944 62 aa4.13□□□□□ -1.75
TSEN54-206ENST00000579449 KRTAP12-4P60329 112 aa4.09□□□□□ -1.75
TSEN54-206ENST00000579449 SYNE1Q8NF91 8797 aaKnown RBP4.03□□□□□ -1.76
TSEN54-206ENST00000579449 KRTAP20-2Q3LI61 65 aa3.99□□□□□ -1.77
TSEN54-206ENST00000579449 HMCN1Q96RW7 5635 aa3.96□□□□□ -1.78
TSEN54-206ENST00000579449 AHNAK2Q8IVF2 5795 aa3.96□□□□□ -1.78
TSEN54-206ENST00000579449 KRTAP6-2Q3LI66 62 aa3.88□□□□□ -1.79
TSEN54-206ENST00000579449 KRTAP5-10Q6L8G5 202 aa3.83□□□□□ -1.8
TSEN54-206ENST00000579449 KRTAP5-2Q701N4 177 aa3.82□□□□□ -1.8
TSEN54-206ENST00000579449 KRTAP5-7Q6L8G8 165 aa3.77□□□□□ -1.81
TSEN54-206ENST00000579449 LCE3EQ5T5B0 92 aa3.71□□□□□ -1.82
TSEN54-206ENST00000579449 LCE1EQ5T753 118 aa3.69□□□□□ -1.82
TSEN54-206ENST00000579449 LCE3DQ9BYE3 92 aa3.54□□□□□ -1.84
TSEN54-206ENST00000579449 AHNAKQ09666 5890 aaKnown RBP3.5□□□□□ -1.85
TSEN54-206ENST00000579449 OBSCNQ5VST9 7968 aa3.42□□□□□ -1.86
TSEN54-206ENST00000579449 KRTAP5-11Q6L8G4 156 aa3.42□□□□□ -1.86
TSEN54-206ENST00000579449 MUC5ACP98088 5654 aa3.39□□□□□ -1.87
TSEN54-206ENST00000579449 KRTAP5-8O75690 187 aa3.38□□□□□ -1.87
TSEN54-206ENST00000579449 MUC5BQ9HC84 5762 aaPredicted RBP3.38□□□□□ -1.87
TSEN54-206ENST00000579449 KRTAP5-1Q6L8H4 278 aa3.34□□□□□ -1.87
TSEN54-206ENST00000579449 INE1O15225 51 aa3.31□□□□□ -1.88
TSEN54-206ENST00000579449 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.22□□□□□ -1.89
TSEN54-206ENST00000579449 LCE1BQ5T7P3 118 aa3.17□□□□□ -1.9
TSEN54-206ENST00000579449 LCE1CQ5T751 118 aa3.13□□□□□ -1.91
TSEN54-206ENST00000579449 PRM1P04553 51 aa2.89□□□□□ -1.95
TSEN54-206ENST00000579449 KRTAP4-4Q9BYR3 166 aa2.74□□□□□ -1.97
TSEN54-206ENST00000579449 KRTAP21-2Q3LI59 83 aa2.73□□□□□ -1.97
TSEN54-206ENST00000579449 PHGR1C9JFL3 82 aa2.39□□□□□ -2.03
TSEN54-206ENST00000579449 MUC19Q7Z5P9 8384 aa2.04□□□□□ -2.08
TSEN54-206ENST00000579449 KRTAP21-1Q3LI58 79 aa1.72□□□□□ -2.13
TSEN54-206ENST00000579449 MUC16Q8WXI7 14507 aa1.57□□□□□ -2.16
Retrieved 78 of 20,778 RNA–protein pairs in 9.3 ms