RNA–Protein interactions for RNA: ENST00000577539.1

VAPA-203, Transcript of VAMP associated protein A, humanhuman

Gene VAPA, Length 3,760 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VAPA-203ENST00000577539 MT2AP02795 61 aa2.22□□□□□ -2.05
VAPA-203ENST00000577539 UBR4Q5T4S7 5183 aa2.21□□□□□ -2.05
VAPA-203ENST00000577539 LCE3AQ5TA76 89 aa2.19□□□□□ -2.06
VAPA-203ENST00000577539 LCE1EQ5T753 118 aa2.14□□□□□ -2.07
VAPA-203ENST00000577539 SPRR5A0A1B0GTR4 108 aa2.14□□□□□ -2.07
VAPA-203ENST00000577539 KRTAP5-11Q6L8G4 156 aa2.13□□□□□ -2.07
VAPA-203ENST00000577539 KRTAP9-6A8MVA2 160 aa2.13□□□□□ -2.07
VAPA-203ENST00000577539 MT1BP07438 61 aa2.13□□□□□ -2.07
VAPA-203ENST00000577539 KRTAP19-8Q3LI54 63 aa2.13□□□□□ -2.07
VAPA-203ENST00000577539 INE1O15225 51 aa2.13□□□□□ -2.07
VAPA-203ENST00000577539 MT1XP80297 61 aa2.11□□□□□ -2.07
VAPA-203ENST00000577539 HMCN1Q96RW7 5635 aa2.11□□□□□ -2.07
VAPA-203ENST00000577539 KRTAP12-3P60328 96 aa2.09□□□□□ -2.07
VAPA-203ENST00000577539 KRTAP8-1Q8IUC2 63 aa2.09□□□□□ -2.07
VAPA-203ENST00000577539 KRTAP10-7P60409 375 aaPredicted RBP2.08□□□□□ -2.08
VAPA-203ENST00000577539 LCE3DQ9BYE3 92 aa2.06□□□□□ -2.08
VAPA-203ENST00000577539 USH2AO75445 5202 aa2□□□□□ -2.09
VAPA-203ENST00000577539 KRTAP19-5Q3LI72 72 aa2□□□□□ -2.09
VAPA-203ENST00000577539 KRTAP6-3Q3LI67 103 aa1.99□□□□□ -2.09
VAPA-203ENST00000577539 KMT2DO14686 5537 aa1.96□□□□□ -2.1
VAPA-203ENST00000577539 FSIP2Q5CZC0 6907 aa1.93□□□□□ -2.1
VAPA-203ENST00000577539 KRTAP19-7Q3SYF9 63 aa1.87□□□□□ -2.11
VAPA-203ENST00000577539 KRTAP5-6Q6L8G9 129 aaPredicted RBP1.85□□□□□ -2.11
VAPA-203ENST00000577539 MT1EP04732 61 aa1.83□□□□□ -2.12
VAPA-203ENST00000577539 MT1LQ93083 61 aa1.83□□□□□ -2.12
VAPA-203ENST00000577539 KRTAP5-5Q701N2 237 aaPredicted RBP1.82□□□□□ -2.12
VAPA-203ENST00000577539 SSPOA2VEC9 5147 aa1.82□□□□□ -2.12
VAPA-203ENST00000577539 KRTAP5-1Q6L8H4 278 aa1.81□□□□□ -2.12
VAPA-203ENST00000577539 CRCT1Q9UGL9 99 aa1.81□□□□□ -2.12
VAPA-203ENST00000577539 KRTAP19-6Q3LI70 58 aa1.79□□□□□ -2.12
VAPA-203ENST00000577539 KRTAP4-3Q9BYR4 195 aa1.78□□□□□ -2.12
VAPA-203ENST00000577539 MT1GP13640 62 aa1.76□□□□□ -2.13
VAPA-203ENST00000577539 KRTAP2-3P0C7H8 128 aa1.75□□□□□ -2.13
VAPA-203ENST00000577539 KRTAP2-4Q9BYR9 128 aa1.75□□□□□ -2.13
VAPA-203ENST00000577539 KRTAP2-1Q9BYU5 128 aa1.75□□□□□ -2.13
VAPA-203ENST00000577539 MUC12Q9UKN1 5478 aa1.75□□□□□ -2.13
VAPA-203ENST00000577539 FCGBPQ9Y6R7 5405 aaPredicted RBP1.74□□□□□ -2.13
VAPA-203ENST00000577539 DSTQ03001 7570 aaKnown RBP1.74□□□□□ -2.13
VAPA-203ENST00000577539 SPRR2FQ96RM1 72 aa1.73□□□□□ -2.13
VAPA-203ENST00000577539 KRTAP12-4P60329 112 aa1.72□□□□□ -2.13
VAPA-203ENST00000577539 KRTAP19-3Q7Z4W3 81 aa1.72□□□□□ -2.13
VAPA-203ENST00000577539 MT1MQ8N339 61 aa1.72□□□□□ -2.13
VAPA-203ENST00000577539 SYNE1Q8NF91 8797 aaKnown RBP1.68□□□□□ -2.14
VAPA-203ENST00000577539 MACF1Q9UPN3 7388 aaKnown RBP1.65□□□□□ -2.15
VAPA-203ENST00000577539 KRTAP5-9P26371 169 aa1.64□□□□□ -2.15
VAPA-203ENST00000577539 MUC5BQ9HC84 5762 aaPredicted RBP1.63□□□□□ -2.15
VAPA-203ENST00000577539 SYNE2Q8WXH0 6885 aaKnown RBP1.62□□□□□ -2.15
VAPA-203ENST00000577539 OBSCNQ5VST9 7968 aa1.58□□□□□ -2.16
VAPA-203ENST00000577539 SPRR2EP22531 72 aa1.57□□□□□ -2.16
VAPA-203ENST00000577539 SPRR2BP35325 72 aa1.57□□□□□ -2.16
VAPA-203ENST00000577539 SPRR2AP35326 72 aa1.57□□□□□ -2.16
VAPA-203ENST00000577539 KRTAP6-1Q3LI64 71 aa1.57□□□□□ -2.16
VAPA-203ENST00000577539 MDN1Q9NU22 5596 aa1.56□□□□□ -2.16
VAPA-203ENST00000577539 KRTAP4-4Q9BYR3 166 aa1.54□□□□□ -2.16
VAPA-203ENST00000577539 MT1AP04731 61 aa1.54□□□□□ -2.16
VAPA-203ENST00000577539 SPRR2DP22532 72 aa1.49□□□□□ -2.17
VAPA-203ENST00000577539 KRTAP5-4Q6L8H1 288 aa1.48□□□□□ -2.17
VAPA-203ENST00000577539 LCE1CQ5T751 118 aa1.46□□□□□ -2.18
VAPA-203ENST00000577539 LCE1BQ5T7P3 118 aa1.46□□□□□ -2.18
VAPA-203ENST00000577539 PRM1P04553 51 aa1.44□□□□□ -2.18
VAPA-203ENST00000577539 KRTAP6-2Q3LI66 62 aa1.42□□□□□ -2.18
VAPA-203ENST00000577539 KRTAP5-7Q6L8G8 165 aa1.39□□□□□ -2.19
VAPA-203ENST00000577539 MUC19Q7Z5P9 8384 aa1.36□□□□□ -2.19
VAPA-203ENST00000577539 MT4P47944 62 aa1.35□□□□□ -2.19
VAPA-203ENST00000577539 KRTAP5-2Q701N4 177 aa1.34□□□□□ -2.2
VAPA-203ENST00000577539 KRTAP5-8O75690 187 aa1.32□□□□□ -2.2
VAPA-203ENST00000577539 NEBP20929 6669 aa1.3□□□□□ -2.2
VAPA-203ENST00000577539 AHNAKQ09666 5890 aaKnown RBP1.29□□□□□ -2.2
VAPA-203ENST00000577539 KRTAP20-2Q3LI61 65 aa1.25□□□□□ -2.21
VAPA-203ENST00000577539 GPR98Q8WXG9 6306 aa1.24□□□□□ -2.21
VAPA-203ENST00000577539 KRTAP5-10Q6L8G5 202 aa1.21□□□□□ -2.22
VAPA-203ENST00000577539 KRTAP20-1Q3LI63 56 aa1.17□□□□□ -2.22
VAPA-203ENST00000577539 MUC5ACP98088 5654 aa1.16□□□□□ -2.22
VAPA-203ENST00000577539 KRTAP21-2Q3LI59 83 aa1.11□□□□□ -2.23
VAPA-203ENST00000577539 AHNAK2Q8IVF2 5795 aa1.09□□□□□ -2.24
VAPA-203ENST00000577539 KRTAP21-1Q3LI58 79 aa0.88□□□□□ -2.27
VAPA-203ENST00000577539 PHGR1C9JFL3 82 aa0.77□□□□□ -2.29
VAPA-203ENST00000577539 MUC16Q8WXI7 14507 aa0.59□□□□□ -2.31
Retrieved 78 of 20,778 RNA–protein pairs in 282 ms