RNA–Protein interactions for RNA: ENST00000575338.1

SMG6-217, Transcript of SMG6, nonsense mediated mRNA decay factor, humanhuman

TSL 4

Gene SMG6, Length 546 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMG6-217ENST00000575338 KRTAP4-8A0A0G2JLE6 195 aa2.46□□□□□ -2.02
SMG6-217ENST00000575338 KRTAP4-8Q9BYQ9 185 aa2.46□□□□□ -2.02
SMG6-217ENST00000575338 KRTAP19-7Q3SYF9 63 aa2.45□□□□□ -2.02
SMG6-217ENST00000575338 SYNE2Q8WXH0 6885 aaKnown RBP2.45□□□□□ -2.02
SMG6-217ENST00000575338 MT1EP04732 61 aa2.42□□□□□ -2.02
SMG6-217ENST00000575338 MT1LQ93083 61 aa2.39□□□□□ -2.03
SMG6-217ENST00000575338 KRTAP20-1Q3LI63 56 aa2.37□□□□□ -2.03
SMG6-217ENST00000575338 MT1GP13640 62 aa2.35□□□□□ -2.03
SMG6-217ENST00000575338 MUC12Q9UKN1 5478 aa2.35□□□□□ -2.03
SMG6-217ENST00000575338 KMT2DO14686 5537 aa2.34□□□□□ -2.03
SMG6-217ENST00000575338 NEBP20929 6669 aa2.33□□□□□ -2.04
SMG6-217ENST00000575338 KRTAP5-9P26371 169 aa2.33□□□□□ -2.04
SMG6-217ENST00000575338 KRTAP19-3Q7Z4W3 81 aa2.33□□□□□ -2.04
SMG6-217ENST00000575338 SPRR2FQ96RM1 72 aa2.3□□□□□ -2.04
SMG6-217ENST00000575338 INE1O15225 51 aa2.29□□□□□ -2.04
SMG6-217ENST00000575338 KRTAP2-3P0C7H8 128 aa2.29□□□□□ -2.04
SMG6-217ENST00000575338 KRTAP2-4Q9BYR9 128 aa2.29□□□□□ -2.04
SMG6-217ENST00000575338 MT1MQ8N339 61 aa2.27□□□□□ -2.05
SMG6-217ENST00000575338 LCE5AQ5TCM9 118 aa2.25□□□□□ -2.05
SMG6-217ENST00000575338 KRTAP9-6A8MVA2 160 aa2.24□□□□□ -2.05
SMG6-217ENST00000575338 KRTAP4-7Q9BYR0 210 aa2.24□□□□□ -2.05
SMG6-217ENST00000575338 MDN1Q9NU22 5596 aa2.23□□□□□ -2.05
SMG6-217ENST00000575338 KRTAP2-1Q9BYU5 128 aa2.21□□□□□ -2.06
SMG6-217ENST00000575338 KRTAP2-2Q9BYT5 123 aa2.2□□□□□ -2.06
SMG6-217ENST00000575338 LCE1AQ5T7P2 110 aa2.18□□□□□ -2.06
SMG6-217ENST00000575338 SPRR2EP22531 72 aa2.17□□□□□ -2.06
SMG6-217ENST00000575338 SPRR2BP35325 72 aa2.17□□□□□ -2.06
SMG6-217ENST00000575338 SPRR2AP35326 72 aa2.17□□□□□ -2.06
SMG6-217ENST00000575338 LCE3BQ5TA77 95 aa2.17□□□□□ -2.06
SMG6-217ENST00000575338 KRTAP4-12Q9BQ66 201 aa2.16□□□□□ -2.06
SMG6-217ENST00000575338 KRTAP9-9Q9BYP9 154 aa2.16□□□□□ -2.06
SMG6-217ENST00000575338 KRTAP9-4Q9BYQ2 154 aa2.16□□□□□ -2.06
SMG6-217ENST00000575338 KRTAP4-3Q9BYR4 195 aa2.15□□□□□ -2.07
SMG6-217ENST00000575338 SPRR2DP22532 72 aa2.1□□□□□ -2.07
SMG6-217ENST00000575338 MT1AP04731 61 aa2.06□□□□□ -2.08
SMG6-217ENST00000575338 LCE1DQ5T752 114 aa2.04□□□□□ -2.08
SMG6-217ENST00000575338 KRTAP5-5Q701N2 237 aaPredicted RBP2.02□□□□□ -2.09
SMG6-217ENST00000575338 DSTQ03001 7570 aaKnown RBP2□□□□□ -2.09
SMG6-217ENST00000575338 KRTAP4-9Q9BYQ8 210 aa2□□□□□ -2.09
SMG6-217ENST00000575338 KRTAP6-1Q3LI64 71 aa1.99□□□□□ -2.09
SMG6-217ENST00000575338 KRTAP4-2Q9BYR5 136 aa1.99□□□□□ -2.09
SMG6-217ENST00000575338 GPR98Q8WXG9 6306 aa1.96□□□□□ -2.1
SMG6-217ENST00000575338 KRTAP12-4P60329 112 aa1.93□□□□□ -2.1
SMG6-217ENST00000575338 KRTAP4-11Q9BYQ6 195 aa1.91□□□□□ -2.1
SMG6-217ENST00000575338 LCE4AQ5TA78 99 aa1.9□□□□□ -2.11
SMG6-217ENST00000575338 LCE3DQ9BYE3 92 aa1.9□□□□□ -2.11
SMG6-217ENST00000575338 MT3P25713 68 aa1.89□□□□□ -2.11
SMG6-217ENST00000575338 KRTAP5-10Q6L8G5 202 aa1.88□□□□□ -2.11
SMG6-217ENST00000575338 KRTAP5-4Q6L8H1 288 aa1.88□□□□□ -2.11
SMG6-217ENST00000575338 LCE3EQ5T5B0 92 aa1.87□□□□□ -2.11
SMG6-217ENST00000575338 SYNE1Q8NF91 8797 aaKnown RBP1.86□□□□□ -2.11
SMG6-217ENST00000575338 AHNAK2Q8IVF2 5795 aa1.86□□□□□ -2.11
SMG6-217ENST00000575338 KRTAP5-3Q6L8H2 238 aa1.86□□□□□ -2.11
SMG6-217ENST00000575338 KRTAP5-7Q6L8G8 165 aa1.85□□□□□ -2.11
SMG6-217ENST00000575338 HMCN1Q96RW7 5635 aa1.83□□□□□ -2.12
SMG6-217ENST00000575338 MT4P47944 62 aa1.83□□□□□ -2.12
SMG6-217ENST00000575338 KRTAP6-2Q3LI66 62 aa1.82□□□□□ -2.12
SMG6-217ENST00000575338 KRTAP20-2Q3LI61 65 aa1.76□□□□□ -2.13
SMG6-217ENST00000575338 KRTAP5-2Q701N4 177 aa1.73□□□□□ -2.13
SMG6-217ENST00000575338 PRM1P04553 51 aa1.65□□□□□ -2.15
SMG6-217ENST00000575338 LCE1EQ5T753 118 aa1.62□□□□□ -2.15
SMG6-217ENST00000575338 OBSCNQ5VST9 7968 aa1.61□□□□□ -2.15
SMG6-217ENST00000575338 KRTAP5-8O75690 187 aa1.56□□□□□ -2.16
SMG6-217ENST00000575338 MUC5ACP98088 5654 aa1.54□□□□□ -2.16
SMG6-217ENST00000575338 MUC5BQ9HC84 5762 aaPredicted RBP1.53□□□□□ -2.16
SMG6-217ENST00000575338 AHNAKQ09666 5890 aaKnown RBP1.53□□□□□ -2.16
SMG6-217ENST00000575338 LCE1CQ5T751 118 aa1.5□□□□□ -2.17
SMG6-217ENST00000575338 LCE1BQ5T7P3 118 aa1.5□□□□□ -2.17
SMG6-217ENST00000575338 KRTAP5-1Q6L8H4 278 aa1.45□□□□□ -2.18
SMG6-217ENST00000575338 KRTAP5-6Q6L8G9 129 aaPredicted RBP1.41□□□□□ -2.18
SMG6-217ENST00000575338 KRTAP5-11Q6L8G4 156 aa1.31□□□□□ -2.2
SMG6-217ENST00000575338 KRTAP21-2Q3LI59 83 aa1.3□□□□□ -2.2
SMG6-217ENST00000575338 LCE1FQ5T754 118 aa1.2□□□□□ -2.22
SMG6-217ENST00000575338 KRTAP4-4Q9BYR3 166 aa1.13□□□□□ -2.23
SMG6-217ENST00000575338 PHGR1C9JFL3 82 aa1.1□□□□□ -2.23
SMG6-217ENST00000575338 KRTAP21-1Q3LI58 79 aa1.04□□□□□ -2.24
SMG6-217ENST00000575338 MUC19Q7Z5P9 8384 aa0.93□□□□□ -2.26
SMG6-217ENST00000575338 MUC16Q8WXI7 14507 aa0.76□□□□□ -2.29
Retrieved 78 of 20,778 RNA–protein pairs in 52.2 ms