RNA–Protein interactions for RNA: ENST00000572809.1

NUP88-205, Transcript of nucleoporin 88, humanhuman

TSL 3

Gene NUP88, Length 771 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-205ENST00000572809 KRTAP13-4Q3LI77 160 aa2.93□□□□□ -1.94
NUP88-205ENST00000572809 COA5Q86WW8 74 aa2.93□□□□□ -1.94
NUP88-205ENST00000572809 MDN1Q9NU22 5596 aa2.93□□□□□ -1.94
NUP88-205ENST00000572809 PSPHP1O15172 72 aa2.92□□□□□ -1.94
NUP88-205ENST00000572809 COX7CP15954 63 aa2.92□□□□□ -1.94
NUP88-205ENST00000572809 LCE3EQ5T5B0 92 aa2.92□□□□□ -1.94
NUP88-205ENST00000572809 SERP1Q9Y6X1 66 aa2.91□□□□□ -1.94
NUP88-205ENST00000572809 V9GYY9 64 aa2.91□□□□□ -1.94
NUP88-205ENST00000572809 SPRR2DP22532 72 aa2.89□□□□□ -1.95
NUP88-205ENST00000572809 KRTAP2-1Q9BYU5 128 aa2.88□□□□□ -1.95
NUP88-205ENST00000572809 H7BZZ5 65 aa2.87□□□□□ -1.95
NUP88-205ENST00000572809 A0A0D9SG42 100 aa2.86□□□□□ -1.95
NUP88-205ENST00000572809 A0A1B0GU33 70 aa2.86□□□□□ -1.95
NUP88-205ENST00000572809 SPATA8Q6RVD6 105 aa2.86□□□□□ -1.95
NUP88-205ENST00000572809 CYSTM1Q9H1C7 97 aa2.85□□□□□ -1.95
NUP88-205ENST00000572809 KRTAP5-5Q701N2 237 aaPredicted RBP2.84□□□□□ -1.95
NUP88-205ENST00000572809 SPINT4Q6UDR6 99 aa2.83□□□□□ -1.96
NUP88-205ENST00000572809 PRO0628Q9UI54 55 aa2.81□□□□□ -1.96
NUP88-205ENST00000572809 A0A1B0GU69 56 aa2.8□□□□□ -1.96
NUP88-205ENST00000572809 LUZP6Q538Z0 58 aa2.8□□□□□ -1.96
NUP88-205ENST00000572809 ANAPC13Q9BS18 74 aa2.8□□□□□ -1.96
NUP88-205ENST00000572809 KRTAP12-1P59990 96 aa2.79□□□□□ -1.96
NUP88-205ENST00000572809 KRTAP19-7Q3SYF9 63 aa2.78□□□□□ -1.96
NUP88-205ENST00000572809 KRTAP5-8O75690 187 aa2.76□□□□□ -1.97
NUP88-205ENST00000572809 CCDC179H3BU77 68 aa2.75□□□□□ -1.97
NUP88-205ENST00000572809 MT1EP04732 61 aa2.75□□□□□ -1.97
NUP88-205ENST00000572809 KRTAP19-3Q7Z4W3 81 aa2.74□□□□□ -1.97
NUP88-205ENST00000572809 LCE1CQ5T751 118 aa2.73□□□□□ -1.97
NUP88-205ENST00000572809 LCE1BQ5T7P3 118 aa2.73□□□□□ -1.97
NUP88-205ENST00000572809 KRTAP19-5Q3LI72 72 aa2.72□□□□□ -1.97
NUP88-205ENST00000572809 ATP5EP56381 51 aaPredicted RBP2.71□□□□□ -1.98
NUP88-205ENST00000572809 PRR15LQ9BU68 103 aa2.71□□□□□ -1.98
NUP88-205ENST00000572809 MT1GP13640 62 aa2.7□□□□□ -1.98
NUP88-205ENST00000572809 DSTQ03001 7570 aaKnown RBP2.69□□□□□ -1.98
NUP88-205ENST00000572809 TNP1P09430 55 aa2.68□□□□□ -1.98
NUP88-205ENST00000572809 C10orf95Q9H7T3 257 aa2.68□□□□□ -1.98
NUP88-205ENST00000572809 LINC01558Q9Y6Z2 57 aa2.68□□□□□ -1.98
NUP88-205ENST00000572809 PP632Q6XCG6 107 aa2.66□□□□□ -1.98
NUP88-205ENST00000572809 SPRR5A0A1B0GTR4 108 aa2.65□□□□□ -1.99
NUP88-205ENST00000572809 TMEM258P61165 79 aa2.64□□□□□ -1.99
NUP88-205ENST00000572809 UQCR11O14957 56 aa2.63□□□□□ -1.99
NUP88-205ENST00000572809 MT1LQ93083 61 aa2.63□□□□□ -1.99
NUP88-205ENST00000572809 K7ERS5 55 aa2.62□□□□□ -1.99
NUP88-205ENST00000572809 MT1MQ8N339 61 aa2.62□□□□□ -1.99
NUP88-205ENST00000572809 KRTAP12-3P60328 96 aa2.56□□□□□ -2
NUP88-205ENST00000572809 MIR22HGQ0VDD5 57 aa2.56□□□□□ -2
NUP88-205ENST00000572809 MT4P47944 62 aa2.53□□□□□ -2
NUP88-205ENST00000572809 KRTAP25-1Q3LHN0 102 aa2.52□□□□□ -2.01
NUP88-205ENST00000572809 Q1T7F1 81 aa2.5□□□□□ -2.01
NUP88-205ENST00000572809 LCE3DQ9BYE3 92 aa2.49□□□□□ -2.01
NUP88-205ENST00000572809 A6NED7 52 aa2.48□□□□□ -2.01
NUP88-205ENST00000572809 HMCN1Q96RW7 5635 aa2.41□□□□□ -2.02
NUP88-205ENST00000572809 GPR98Q8WXG9 6306 aa2.4□□□□□ -2.03
NUP88-205ENST00000572809 CDC42SE1Q9NRR8 79 aa2.37□□□□□ -2.03
NUP88-205ENST00000572809 KRTAP12-4P60329 112 aa2.36□□□□□ -2.03
NUP88-205ENST00000572809 RPS28P62857 69 aaKnown RBP2.36□□□□□ -2.03
NUP88-205ENST00000572809 KRTAP20-2Q3LI61 65 aa2.36□□□□□ -2.03
NUP88-205ENST00000572809 KRTAP5-10Q6L8G5 202 aa2.36□□□□□ -2.03
NUP88-205ENST00000572809 MUC19Q7Z5P9 8384 aa2.36□□□□□ -2.03
NUP88-205ENST00000572809 SYNE1Q8NF91 8797 aaKnown RBP2.34□□□□□ -2.03
NUP88-205ENST00000572809 ROMO1P60602 79 aa2.34□□□□□ -2.03
NUP88-205ENST00000572809 AHNAK2Q8IVF2 5795 aa2.28□□□□□ -2.04
NUP88-205ENST00000572809 KRTAP5-7Q6L8G8 165 aa2.27□□□□□ -2.05
NUP88-205ENST00000572809 MT1AP04731 61 aa2.24□□□□□ -2.05
NUP88-205ENST00000572809 KRTAP6-1Q3LI64 71 aa2.23□□□□□ -2.05
NUP88-205ENST00000572809 PMAIP1Q13794 54 aa2.19□□□□□ -2.06
NUP88-205ENST00000572809 KRTAP6-2Q3LI66 62 aa2.13□□□□□ -2.07
NUP88-205ENST00000572809 BRK1Q8WUW1 75 aa2.06□□□□□ -2.08
NUP88-205ENST00000572809 KTN1-AS1Q86SY8 53 aa2.03□□□□□ -2.08
NUP88-205ENST00000572809 KRTAP21-2Q3LI59 83 aa2□□□□□ -2.09
NUP88-205ENST00000572809 MUC5ACP98088 5654 aa1.91□□□□□ -2.1
NUP88-205ENST00000572809 MUC5BQ9HC84 5762 aaPredicted RBP1.89□□□□□ -2.11
NUP88-205ENST00000572809 AHNAKQ09666 5890 aaKnown RBP1.84□□□□□ -2.11
NUP88-205ENST00000572809 INE1O15225 51 aa1.52□□□□□ -2.17
NUP88-205ENST00000572809 PHGR1C9JFL3 82 aa1.39□□□□□ -2.19
NUP88-205ENST00000572809 PRM1P04553 51 aa1.19□□□□□ -2.22
NUP88-205ENST00000572809 KRTAP21-1Q3LI58 79 aa1.05□□□□□ -2.24
NUP88-205ENST00000572809 MUC16Q8WXI7 14507 aa0.96□□□□□ -2.26
Retrieved 78 of 20,778 RNA–protein pairs in 48.4 ms