RNA–Protein interactions for RNA: ENST00000572270.1

CCDC40-208, Transcript of coiled-coil domain containing 40, humanhuman

TSL 4

Gene CCDC40, Length 460 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-208ENST00000572270 ACYP2P14621 99 aa4.08□□□□□ -1.76
CCDC40-208ENST00000572270 SPINT4Q6UDR6 99 aa4.06□□□□□ -1.76
CCDC40-208ENST00000572270 H3BPC8 53 aa4.04□□□□□ -1.76
CCDC40-208ENST00000572270 CHKB-CPT1BH3BT56 60 aa4.04□□□□□ -1.76
CCDC40-208ENST00000572270 OBSCNQ5VST9 7968 aa4.04□□□□□ -1.76
CCDC40-208ENST00000572270 SCGB1A1P11684 91 aa4.01□□□□□ -1.77
CCDC40-208ENST00000572270 KRTAP12-3P60328 96 aa3.98□□□□□ -1.77
CCDC40-208ENST00000572270 TNP1P09430 55 aa3.96□□□□□ -1.78
CCDC40-208ENST00000572270 KRTAP12-1P59990 96 aa3.9□□□□□ -1.79
CCDC40-208ENST00000572270 SMIM20Q8N5G0 67 aa3.89□□□□□ -1.79
CCDC40-208ENST00000572270 SNURFQ9Y675 71 aa3.88□□□□□ -1.79
CCDC40-208ENST00000572270 KRTAP6-1Q3LI64 71 aa3.87□□□□□ -1.79
CCDC40-208ENST00000572270 SPATA8Q6RVD6 105 aa3.87□□□□□ -1.79
CCDC40-208ENST00000572270 MT1AP04731 61 aa3.85□□□□□ -1.79
CCDC40-208ENST00000572270 KRTAP6-2Q3LI66 62 aa3.84□□□□□ -1.79
CCDC40-208ENST00000572270 SERP2Q8N6R1 65 aa3.84□□□□□ -1.79
CCDC40-208ENST00000572270 KRTAP5-1Q6L8H4 278 aa3.83□□□□□ -1.8
CCDC40-208ENST00000572270 ANAPC13Q9BS18 74 aa3.83□□□□□ -1.8
CCDC40-208ENST00000572270 COX7CP15954 63 aa3.81□□□□□ -1.8
CCDC40-208ENST00000572270 KRTAP19-4Q3LI73 84 aa3.79□□□□□ -1.8
CCDC40-208ENST00000572270 KRTAP4-2Q9BYR5 136 aa3.78□□□□□ -1.8
CCDC40-208ENST00000572270 SEC61GP60059 68 aa3.77□□□□□ -1.81
CCDC40-208ENST00000572270 SERP1Q9Y6X1 66 aa3.77□□□□□ -1.81
CCDC40-208ENST00000572270 H3BS24 57 aa3.75□□□□□ -1.81
CCDC40-208ENST00000572270 SPANXA2-OT1Q8N9U9 137 aa3.75□□□□□ -1.81
CCDC40-208ENST00000572270 CCDC179H3BU77 68 aa3.74□□□□□ -1.81
CCDC40-208ENST00000572270 A0A1B0GU33 70 aa3.71□□□□□ -1.82
CCDC40-208ENST00000572270 COA5Q86WW8 74 aa3.69□□□□□ -1.82
CCDC40-208ENST00000572270 H7BZZ5 65 aa3.68□□□□□ -1.82
CCDC40-208ENST00000572270 PCP4P48539 62 aa3.68□□□□□ -1.82
CCDC40-208ENST00000572270 SMIM26A0A096LP01 95 aa3.64□□□□□ -1.83
CCDC40-208ENST00000572270 KRTAP25-1Q3LHN0 102 aa3.63□□□□□ -1.83
CCDC40-208ENST00000572270 TMEM258P61165 79 aa3.61□□□□□ -1.83
CCDC40-208ENST00000572270 ATP5EP56381 51 aaPredicted RBP3.6□□□□□ -1.83
CCDC40-208ENST00000572270 A8MU10 97 aa3.58□□□□□ -1.84
CCDC40-208ENST00000572270 LCE3CQ5T5A8 94 aa3.58□□□□□ -1.84
CCDC40-208ENST00000572270 MT3P25713 68 aa3.57□□□□□ -1.84
CCDC40-208ENST00000572270 A0A1B0GU69 56 aa3.48□□□□□ -1.85
CCDC40-208ENST00000572270 KRTAP15-1Q3LI76 137 aa3.48□□□□□ -1.85
CCDC40-208ENST00000572270 LCE1EQ5T753 118 aa3.42□□□□□ -1.86
CCDC40-208ENST00000572270 RPS28P62857 69 aaKnown RBP3.39□□□□□ -1.87
CCDC40-208ENST00000572270 LINC01558Q9Y6Z2 57 aa3.38□□□□□ -1.87
CCDC40-208ENST00000572270 PRR15LQ9BU68 103 aa3.37□□□□□ -1.87
CCDC40-208ENST00000572270 KRTAP9-6A8MVA2 160 aa3.36□□□□□ -1.87
CCDC40-208ENST00000572270 V9GYY9 64 aa3.35□□□□□ -1.87
CCDC40-208ENST00000572270 Q1T7F1 81 aa3.33□□□□□ -1.88
CCDC40-208ENST00000572270 LCE1BQ5T7P3 118 aa3.32□□□□□ -1.88
CCDC40-208ENST00000572270 PSPHP1O15172 72 aa3.3□□□□□ -1.88
CCDC40-208ENST00000572270 UQCR11O14957 56 aa3.27□□□□□ -1.89
CCDC40-208ENST00000572270 MIR22HGQ0VDD5 57 aa3.22□□□□□ -1.89
CCDC40-208ENST00000572270 A6NED7 52 aa3.2□□□□□ -1.9
CCDC40-208ENST00000572270 KRTAP23-1A1A580 65 aa3.18□□□□□ -1.9
CCDC40-208ENST00000572270 LCE1CQ5T751 118 aa3.18□□□□□ -1.9
CCDC40-208ENST00000572270 PHGR1C9JFL3 82 aa3.13□□□□□ -1.91
CCDC40-208ENST00000572270 CDC42SE1Q9NRR8 79 aa3.12□□□□□ -1.91
CCDC40-208ENST00000572270 K7ERS5 55 aa3.1□□□□□ -1.91
CCDC40-208ENST00000572270 KRTAP5-11Q6L8G4 156 aa3.09□□□□□ -1.91
CCDC40-208ENST00000572270 BRK1Q8WUW1 75 aa3.08□□□□□ -1.92
CCDC40-208ENST00000572270 LCE1FQ5T754 118 aa3.04□□□□□ -1.92
CCDC40-208ENST00000572270 ROMO1P60602 79 aa2.94□□□□□ -1.94
CCDC40-208ENST00000572270 PRO0628Q9UI54 55 aa2.92□□□□□ -1.94
CCDC40-208ENST00000572270 PMAIP1Q13794 54 aa2.88□□□□□ -1.95
CCDC40-208ENST00000572270 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.79□□□□□ -1.96
CCDC40-208ENST00000572270 KTN1-AS1Q86SY8 53 aa2.74□□□□□ -1.97
CCDC40-208ENST00000572270 PRAC1Q96KF2 57 aa2.74□□□□□ -1.97
CCDC40-208ENST00000572270 SVIPQ8NHG7 77 aa2.61□□□□□ -1.99
CCDC40-208ENST00000572270 KRTAP21-2Q3LI59 83 aa2.54□□□□□ -2
CCDC40-208ENST00000572270 MUC19Q7Z5P9 8384 aa2.51□□□□□ -2.01
CCDC40-208ENST00000572270 LCE3DQ9BYE3 92 aa2.46□□□□□ -2.02
CCDC40-208ENST00000572270 KRTAP4-4Q9BYR3 166 aa2.46□□□□□ -2.02
CCDC40-208ENST00000572270 KRTAP21-1Q3LI58 79 aa2.39□□□□□ -2.03
CCDC40-208ENST00000572270 LUZP6Q538Z0 58 aa2.24□□□□□ -2.05
CCDC40-208ENST00000572270 LCE3EQ5T5B0 92 aa2.19□□□□□ -2.06
CCDC40-208ENST00000572270 NDUFAF8A1L188 74 aa2.1□□□□□ -2.07
CCDC40-208ENST00000572270 A0A0A0MQY5 61 aa1.9□□□□□ -2.11
CCDC40-208ENST00000572270 MUC16Q8WXI7 14507 aa1.75□□□□□ -2.13
CCDC40-208ENST00000572270 INE1O15225 51 aa1.72□□□□□ -2.13
CCDC40-208ENST00000572270 PRM1P04553 51 aa1.54□□□□□ -2.16
Retrieved 78 of 20,778 RNA–protein pairs in 72.7 ms