RNA–Protein interactions for RNA: ENST00000570937.1

NUP88-202, Transcript of nucleoporin 88, humanhuman

TSL 3

Gene NUP88, Length 361 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-202ENST00000570937 CSAG1Q6PB30 78 aa1.75□□□□□ -2.13
NUP88-202ENST00000570937 S4R3F8 94 aa1.75□□□□□ -2.13
NUP88-202ENST00000570937 USH2AO75445 5202 aa1.75□□□□□ -2.13
NUP88-202ENST00000570937 MT2AP02795 61 aa1.74□□□□□ -2.13
NUP88-202ENST00000570937 SPATA8Q6RVD6 105 aa1.74□□□□□ -2.13
NUP88-202ENST00000570937 KRTAP6-3Q3LI67 103 aa1.73□□□□□ -2.13
NUP88-202ENST00000570937 LUZP6Q538Z0 58 aa1.73□□□□□ -2.13
NUP88-202ENST00000570937 DMAC1Q96GE9 116 aa1.73□□□□□ -2.13
NUP88-202ENST00000570937 UQCR11O14957 56 aa1.72□□□□□ -2.13
NUP88-202ENST00000570937 MT1FP04733 61 aa1.72□□□□□ -2.13
NUP88-202ENST00000570937 KRTAP25-1Q3LHN0 102 aa1.72□□□□□ -2.13
NUP88-202ENST00000570937 ADM2Q7Z4H4 148 aa1.71□□□□□ -2.14
NUP88-202ENST00000570937 COA5Q86WW8 74 aa1.71□□□□□ -2.14
NUP88-202ENST00000570937 SSPOA2VEC9 5147 aa1.71□□□□□ -2.14
NUP88-202ENST00000570937 P0C880 135 aa1.7□□□□□ -2.14
NUP88-202ENST00000570937 CRIPTQ9P021 101 aa1.69□□□□□ -2.14
NUP88-202ENST00000570937 SPINT4Q6UDR6 99 aa1.68□□□□□ -2.14
NUP88-202ENST00000570937 H0YAA0 97 aa1.67□□□□□ -2.14
NUP88-202ENST00000570937 ACYP2P14621 99 aa1.67□□□□□ -2.14
NUP88-202ENST00000570937 FCGBPQ9Y6R7 5405 aaPredicted RBP1.65□□□□□ -2.14
NUP88-202ENST00000570937 SPRR2GQ9BYE4 73 aa1.65□□□□□ -2.15
NUP88-202ENST00000570937 KRTAP19-6Q3LI70 58 aa1.64□□□□□ -2.15
NUP88-202ENST00000570937 A0A1B0GU69 56 aa1.62□□□□□ -2.15
NUP88-202ENST00000570937 R4GN34 69 aa1.62□□□□□ -2.15
NUP88-202ENST00000570937 A0A1B0GU33 70 aa1.61□□□□□ -2.15
NUP88-202ENST00000570937 KRTAP19-8Q3LI54 63 aa1.61□□□□□ -2.15
NUP88-202ENST00000570937 PLAC4Q8WY50 150 aa1.61□□□□□ -2.15
NUP88-202ENST00000570937 M0QZ58 72 aa1.59□□□□□ -2.15
NUP88-202ENST00000570937 MT1BP07438 61 aa1.59□□□□□ -2.15
NUP88-202ENST00000570937 PRO2289Q9P1D8 64 aa1.59□□□□□ -2.15
NUP88-202ENST00000570937 HMCN1Q96RW7 5635 aa1.57□□□□□ -2.16
NUP88-202ENST00000570937 MACF1Q9UPN3 7388 aaKnown RBP1.56□□□□□ -2.16
NUP88-202ENST00000570937 MT1XP80297 61 aa1.51□□□□□ -2.17
NUP88-202ENST00000570937 SYNE2Q8WXH0 6885 aaKnown RBP1.51□□□□□ -2.17
NUP88-202ENST00000570937 MUC12Q9UKN1 5478 aa1.5□□□□□ -2.17
NUP88-202ENST00000570937 KMT2DO14686 5537 aa1.48□□□□□ -2.17
NUP88-202ENST00000570937 A0A0D9SG42 100 aa1.48□□□□□ -2.17
NUP88-202ENST00000570937 INE1O15225 51 aa1.48□□□□□ -2.17
NUP88-202ENST00000570937 KRTAP8-1Q8IUC2 63 aa1.48□□□□□ -2.17
NUP88-202ENST00000570937 MDN1Q9NU22 5596 aa1.47□□□□□ -2.17
NUP88-202ENST00000570937 KRTAP13-4Q3LI77 160 aa1.47□□□□□ -2.17
NUP88-202ENST00000570937 SPRR2FQ96RM1 72 aa1.46□□□□□ -2.18
NUP88-202ENST00000570937 KRTAP12-1P59990 96 aa1.43□□□□□ -2.18
NUP88-202ENST00000570937 NEBP20929 6669 aa1.43□□□□□ -2.18
NUP88-202ENST00000570937 SPRR2EP22531 72 aa1.42□□□□□ -2.18
NUP88-202ENST00000570937 SPRR2BP35325 72 aa1.42□□□□□ -2.18
NUP88-202ENST00000570937 SPRR2AP35326 72 aa1.42□□□□□ -2.18
NUP88-202ENST00000570937 KRTAP20-1Q3LI63 56 aa1.42□□□□□ -2.18
NUP88-202ENST00000570937 TNP1P09430 55 aa1.4□□□□□ -2.19
NUP88-202ENST00000570937 KRTAP2-3P0C7H8 128 aa1.4□□□□□ -2.19
NUP88-202ENST00000570937 KRTAP2-4Q9BYR9 128 aa1.4□□□□□ -2.19
NUP88-202ENST00000570937 SPRR2DP22532 72 aa1.39□□□□□ -2.19
NUP88-202ENST00000570937 KRTAP2-1Q9BYU5 128 aa1.36□□□□□ -2.19
NUP88-202ENST00000570937 C10orf95Q9H7T3 257 aa1.36□□□□□ -2.19
NUP88-202ENST00000570937 MT1EP04732 61 aa1.34□□□□□ -2.19
NUP88-202ENST00000570937 KRTAP19-7Q3SYF9 63 aa1.34□□□□□ -2.19
NUP88-202ENST00000570937 MT1GP13640 62 aa1.33□□□□□ -2.2
NUP88-202ENST00000570937 KRTAP19-5Q3LI72 72 aa1.33□□□□□ -2.2
NUP88-202ENST00000570937 KRTAP19-3Q7Z4W3 81 aa1.33□□□□□ -2.2
NUP88-202ENST00000570937 MT1LQ93083 61 aa1.28□□□□□ -2.2
NUP88-202ENST00000570937 MT1MQ8N339 61 aa1.27□□□□□ -2.21
NUP88-202ENST00000570937 DSTQ03001 7570 aaKnown RBP1.26□□□□□ -2.21
NUP88-202ENST00000570937 GPR98Q8WXG9 6306 aa1.2□□□□□ -2.22
NUP88-202ENST00000570937 MT4P47944 62 aa1.2□□□□□ -2.22
NUP88-202ENST00000570937 AHNAK2Q8IVF2 5795 aa1.13□□□□□ -2.23
NUP88-202ENST00000570937 KRTAP20-2Q3LI61 65 aa1.12□□□□□ -2.23
NUP88-202ENST00000570937 MT1AP04731 61 aa1.11□□□□□ -2.23
NUP88-202ENST00000570937 KRTAP6-1Q3LI64 71 aa1.08□□□□□ -2.24
NUP88-202ENST00000570937 KRTAP5-10Q6L8G5 202 aa1.08□□□□□ -2.24
NUP88-202ENST00000570937 SYNE1Q8NF91 8797 aaKnown RBP1.07□□□□□ -2.24
NUP88-202ENST00000570937 KRTAP6-2Q3LI66 62 aa1.04□□□□□ -2.24
NUP88-202ENST00000570937 AHNAKQ09666 5890 aaKnown RBP0.94□□□□□ -2.26
NUP88-202ENST00000570937 MUC5ACP98088 5654 aa0.93□□□□□ -2.26
NUP88-202ENST00000570937 MUC5BQ9HC84 5762 aaPredicted RBP0.92□□□□□ -2.26
NUP88-202ENST00000570937 MUC16Q8WXI7 14507 aa0.9□□□□□ -2.26
NUP88-202ENST00000570937 PRM1P04553 51 aa0.79□□□□□ -2.28
NUP88-202ENST00000570937 PHGR1C9JFL3 82 aa0.67□□□□□ -2.3
NUP88-202ENST00000570937 KRTAP21-1Q3LI58 79 aa0.6□□□□□ -2.31
Retrieved 78 of 20,778 RNA–protein pairs in 112.9 ms