RNA–Protein interactions for RNA: ENST00000569784.1

SCAPER-223, Transcript of S-phase cyclin A associated protein in the ER, human

TSL 4

Gene SCAPER, Length 580 nt, Biotype processed transcript.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SCAPER-223	ENST00000569784	KRTAP5-4	Q6L8H1	288 aa		3.2	□□□□□ -1.9
SCAPER-223	ENST00000569784		A0A1B0GU33	70 aa		3.19	□□□□□ -1.9
SCAPER-223	ENST00000569784	SPATA8	Q6RVD6	105 aa		3.19	□□□□□ -1.9
SCAPER-223	ENST00000569784	KRTAP4-4	Q9BYR3	166 aa		3.19	□□□□□ -1.9
SCAPER-223	ENST00000569784	KRTAP19-3	Q7Z4W3	81 aa		3.18	□□□□□ -1.9
SCAPER-223	ENST00000569784	LCE3E	Q5T5B0	92 aa		3.17	□□□□□ -1.9
SCAPER-223	ENST00000569784	MT1E	P04732	61 aa		3.16	□□□□□ -1.9
SCAPER-223	ENST00000569784	PP632	Q6XCG6	107 aa		3.16	□□□□□ -1.9
SCAPER-223	ENST00000569784	CYSTM1	Q9H1C7	97 aa		3.16	□□□□□ -1.9
SCAPER-223	ENST00000569784	KRTAP19-7	Q3SYF9	63 aa		3.15	□□□□□ -1.91
SCAPER-223	ENST00000569784	SMIM26	A0A096LP01	95 aa		3.13	□□□□□ -1.91
SCAPER-223	ENST00000569784		A0A1B0GU69	56 aa		3.13	□□□□□ -1.91
SCAPER-223	ENST00000569784	DST	Q03001	7570 aa	Known RBP	3.12	□□□□□ -1.91
SCAPER-223	ENST00000569784	MT1G	P13640	62 aa		3.11	□□□□□ -1.91
SCAPER-223	ENST00000569784	KRTAP19-5	Q3LI72	72 aa		3.11	□□□□□ -1.91
SCAPER-223	ENST00000569784	COX7C	P15954	63 aa		3.09	□□□□□ -1.91
SCAPER-223	ENST00000569784	KRTAP12-1	P59990	96 aa		3.09	□□□□□ -1.91
SCAPER-223	ENST00000569784	TNP1	P09430	55 aa		3.07	□□□□□ -1.92
SCAPER-223	ENST00000569784	MT4	P47944	62 aa		3.06	□□□□□ -1.92
SCAPER-223	ENST00000569784	PRR15L	Q9BU68	103 aa		3.04	□□□□□ -1.92
SCAPER-223	ENST00000569784		A8MU10	97 aa		3.03	□□□□□ -1.92
SCAPER-223	ENST00000569784		H7BZZ5	65 aa		3.02	□□□□□ -1.93
SCAPER-223	ENST00000569784	MT1M	Q8N339	61 aa		3.02	□□□□□ -1.93
SCAPER-223	ENST00000569784	C10orf95	Q9H7T3	257 aa		3.02	□□□□□ -1.93
SCAPER-223	ENST00000569784	MT1L	Q93083	61 aa		3.01	□□□□□ -1.93
SCAPER-223	ENST00000569784	LCE3A	Q5TA76	89 aa		3	□□□□□ -1.93
SCAPER-223	ENST00000569784	GPR98	Q8WXG9	6306 aa		2.99	□□□□□ -1.93
SCAPER-223	ENST00000569784	ANAPC13	Q9BS18	74 aa		2.98	□□□□□ -1.93
SCAPER-223	ENST00000569784	KRTAP4-3	Q9BYR4	195 aa		2.95	□□□□□ -1.94
SCAPER-223	ENST00000569784	ATP5E	P56381	51 aa	Predicted RBP	2.91	□□□□□ -1.94
SCAPER-223	ENST00000569784	KRTAP12-3	P60328	96 aa		2.9	□□□□□ -1.95
SCAPER-223	ENST00000569784	UQCR11	O14957	56 aa		2.88	□□□□□ -1.95
SCAPER-223	ENST00000569784		K7ERS5	55 aa		2.87	□□□□□ -1.95
SCAPER-223	ENST00000569784	LINC01558	Q9Y6Z2	57 aa		2.87	□□□□□ -1.95
SCAPER-223	ENST00000569784	CCDC179	H3BU77	68 aa		2.85	□□□□□ -1.95
SCAPER-223	ENST00000569784	HMCN1	Q96RW7	5635 aa		2.85	□□□□□ -1.95
SCAPER-223	ENST00000569784	KRTAP5-10	Q6L8G5	202 aa		2.83	□□□□□ -1.96
SCAPER-223	ENST00000569784	OBSCN	Q5VST9	7968 aa		2.83	□□□□□ -1.96
SCAPER-223	ENST00000569784	KRTAP12-4	P60329	112 aa		2.81	□□□□□ -1.96
SCAPER-223	ENST00000569784	MIR22HG	Q0VDD5	57 aa		2.81	□□□□□ -1.96
SCAPER-223	ENST00000569784	KRTAP25-1	Q3LHN0	102 aa		2.81	□□□□□ -1.96
SCAPER-223	ENST00000569784	KRTAP20-2	Q3LI61	65 aa		2.78	□□□□□ -1.96
SCAPER-223	ENST00000569784	TMEM258	P61165	79 aa		2.77	□□□□□ -1.97
SCAPER-223	ENST00000569784	AHNAK2	Q8IVF2	5795 aa		2.76	□□□□□ -1.97
SCAPER-223	ENST00000569784	SPRR5	A0A1B0GTR4	108 aa		2.75	□□□□□ -1.97
SCAPER-223	ENST00000569784	KRTAP5-7	Q6L8G8	165 aa		2.75	□□□□□ -1.97
SCAPER-223	ENST00000569784	KRTAP5-5	Q701N2	237 aa	Predicted RBP	2.71	□□□□□ -1.98
SCAPER-223	ENST00000569784		V9GYY9	64 aa		2.71	□□□□□ -1.98
SCAPER-223	ENST00000569784	PSPHP1	O15172	72 aa		2.69	□□□□□ -1.98
SCAPER-223	ENST00000569784	KRTAP5-2	Q701N4	177 aa		2.68	□□□□□ -1.98
SCAPER-223	ENST00000569784	RPS28	P62857	69 aa	Known RBP	2.64	□□□□□ -1.99
SCAPER-223	ENST00000569784	CDC42SE1	Q9NRR8	79 aa		2.64	□□□□□ -1.99
SCAPER-223	ENST00000569784		A6NED7	52 aa		2.63	□□□□□ -1.99
SCAPER-223	ENST00000569784		Q1T7F1	81 aa		2.6	□□□□□ -1.99
SCAPER-223	ENST00000569784	LCE3D	Q9BYE3	92 aa		2.59	□□□□□ -1.99
SCAPER-223	ENST00000569784	SYNE1	Q8NF91	8797 aa	Known RBP	2.58	□□□□□ -2
SCAPER-223	ENST00000569784	MT1A	P04731	61 aa		2.57	□□□□□ -2
SCAPER-223	ENST00000569784	ROMO1	P60602	79 aa		2.55	□□□□□ -2
SCAPER-223	ENST00000569784	KRTAP6-1	Q3LI64	71 aa		2.55	□□□□□ -2
SCAPER-223	ENST00000569784	KRTAP6-2	Q3LI66	62 aa		2.47	□□□□□ -2.01
SCAPER-223	ENST00000569784	KRTAP5-8	O75690	187 aa		2.45	□□□□□ -2.02
SCAPER-223	ENST00000569784	LCE1C	Q5T751	118 aa		2.42	□□□□□ -2.02
SCAPER-223	ENST00000569784	LCE1B	Q5T7P3	118 aa		2.42	□□□□□ -2.02
SCAPER-223	ENST00000569784	MUC5AC	P98088	5654 aa		2.31	□□□□□ -2.04
SCAPER-223	ENST00000569784	AHNAK	Q09666	5890 aa	Known RBP	2.26	□□□□□ -2.05
SCAPER-223	ENST00000569784	MUC5B	Q9HC84	5762 aa	Predicted RBP	2.26	□□□□□ -2.05
SCAPER-223	ENST00000569784	BRK1	Q8WUW1	75 aa		2.15	□□□□□ -2.07
SCAPER-223	ENST00000569784	MUC19	Q7Z5P9	8384 aa		2.04	□□□□□ -2.08
SCAPER-223	ENST00000569784	PMAIP1	Q13794	54 aa		2	□□□□□ -2.09
SCAPER-223	ENST00000569784	PRO0628	Q9UI54	55 aa		1.94	□□□□□ -2.1
SCAPER-223	ENST00000569784	LUZP6	Q538Z0	58 aa		1.83	□□□□□ -2.12
SCAPER-223	ENST00000569784	KTN1-AS1	Q86SY8	53 aa		1.8	□□□□□ -2.12
SCAPER-223	ENST00000569784	KRTAP21-2	Q3LI59	83 aa		1.75	□□□□□ -2.13
SCAPER-223	ENST00000569784	PHGR1	C9JFL3	82 aa		1.73	□□□□□ -2.13
SCAPER-223	ENST00000569784	KRTAP21-1	Q3LI58	79 aa		1.31	□□□□□ -2.2
SCAPER-223	ENST00000569784	PRM1	P04553	51 aa		1.3	□□□□□ -2.2
SCAPER-223	ENST00000569784	INE1	O15225	51 aa		1.19	□□□□□ -2.22
SCAPER-223	ENST00000569784	MUC16	Q8WXI7	14507 aa		1.03	□□□□□ -2.24

Retrieved 78 of 20,778 RNA–protein pairs in 81.5 ms