RNA–Protein interactions for RNA: ENST00000569080.1

CDH3-209, Transcript of cadherin 3, humanhuman

TSL 5

Gene CDH3, Length 291 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH3-209ENST00000569080 SMIM26A0A096LP01 95 aa2.81□□□□□ -1.96
CDH3-209ENST00000569080 MT1GP13640 62 aa2.81□□□□□ -1.96
CDH3-209ENST00000569080 CCDC179H3BU77 68 aa2.8□□□□□ -1.96
CDH3-209ENST00000569080 MT1LQ93083 61 aa2.8□□□□□ -1.96
CDH3-209ENST00000569080 KRTAP4-11Q9BYQ6 195 aa2.8□□□□□ -1.96
CDH3-209ENST00000569080 MT1MQ8N339 61 aa2.79□□□□□ -1.96
CDH3-209ENST00000569080 C10orf95Q9H7T3 257 aa2.79□□□□□ -1.96
CDH3-209ENST00000569080 HMCN1Q96RW7 5635 aa2.78□□□□□ -1.96
CDH3-209ENST00000569080 LCE3AQ5TA76 89 aa2.78□□□□□ -1.96
CDH3-209ENST00000569080 KRTAP4-2Q9BYR5 136 aa2.77□□□□□ -1.97
CDH3-209ENST00000569080 ATP5EP56381 51 aaPredicted RBP2.76□□□□□ -1.97
CDH3-209ENST00000569080 PP632Q6XCG6 107 aa2.76□□□□□ -1.97
CDH3-209ENST00000569080 TNP1P09430 55 aa2.74□□□□□ -1.97
CDH3-209ENST00000569080 LINC01558Q9Y6Z2 57 aa2.73□□□□□ -1.97
CDH3-209ENST00000569080 KRTAP4-3Q9BYR4 195 aa2.72□□□□□ -1.97
CDH3-209ENST00000569080 KRTAP15-1Q3LI76 137 aa2.71□□□□□ -1.98
CDH3-209ENST00000569080 PRR15LQ9BU68 103 aa2.71□□□□□ -1.98
CDH3-209ENST00000569080 KRTAP5-4Q6L8H1 288 aa2.7□□□□□ -1.98
CDH3-209ENST00000569080 TMEM258P61165 79 aa2.68□□□□□ -1.98
CDH3-209ENST00000569080 AHNAK2Q8IVF2 5795 aa2.68□□□□□ -1.98
CDH3-209ENST00000569080 MT4P47944 62 aa2.67□□□□□ -1.98
CDH3-209ENST00000569080 KRTAP12-3P60328 96 aa2.66□□□□□ -1.98
CDH3-209ENST00000569080 RPS28P62857 69 aaKnown RBP2.65□□□□□ -1.99
CDH3-209ENST00000569080 UQCR11O14957 56 aa2.64□□□□□ -1.99
CDH3-209ENST00000569080 KRTAP5-5Q701N2 237 aaPredicted RBP2.6□□□□□ -1.99
CDH3-209ENST00000569080 MIR22HGQ0VDD5 57 aa2.59□□□□□ -1.99
CDH3-209ENST00000569080 KRTAP25-1Q3LHN0 102 aa2.58□□□□□ -2
CDH3-209ENST00000569080 KRTAP5-10Q6L8G5 202 aa2.57□□□□□ -2
CDH3-209ENST00000569080 SYNE1Q8NF91 8797 aaKnown RBP2.56□□□□□ -2
CDH3-209ENST00000569080 PSPHP1O15172 72 aa2.53□□□□□ -2
CDH3-209ENST00000569080 KRTAP20-2Q3LI61 65 aa2.53□□□□□ -2
CDH3-209ENST00000569080 Q1T7F1 81 aa2.52□□□□□ -2.01
CDH3-209ENST00000569080 V9GYY9 64 aa2.51□□□□□ -2.01
CDH3-209ENST00000569080 SPRR5A0A1B0GTR4 108 aa2.5□□□□□ -2.01
CDH3-209ENST00000569080 K7ERS5 55 aa2.49□□□□□ -2.01
CDH3-209ENST00000569080 KRTAP5-3Q6L8H2 238 aa2.49□□□□□ -2.01
CDH3-209ENST00000569080 PRO0628Q9UI54 55 aa2.49□□□□□ -2.01
CDH3-209ENST00000569080 KRTAP5-7Q6L8G8 165 aa2.47□□□□□ -2.01
CDH3-209ENST00000569080 KRTAP12-4P60329 112 aa2.45□□□□□ -2.02
CDH3-209ENST00000569080 LCE3CQ5T5A8 94 aa2.44□□□□□ -2.02
CDH3-209ENST00000569080 A6NED7 52 aa2.41□□□□□ -2.02
CDH3-209ENST00000569080 CDC42SE1Q9NRR8 79 aa2.39□□□□□ -2.03
CDH3-209ENST00000569080 MT1AP04731 61 aa2.38□□□□□ -2.03
CDH3-209ENST00000569080 KRTAP6-1Q3LI64 71 aa2.37□□□□□ -2.03
CDH3-209ENST00000569080 KRTAP5-2Q701N4 177 aa2.37□□□□□ -2.03
CDH3-209ENST00000569080 KRTAP9-6A8MVA2 160 aa2.36□□□□□ -2.03
CDH3-209ENST00000569080 ROMO1P60602 79 aa2.36□□□□□ -2.03
CDH3-209ENST00000569080 BRK1Q8WUW1 75 aa2.36□□□□□ -2.03
CDH3-209ENST00000569080 PMAIP1Q13794 54 aa2.33□□□□□ -2.04
CDH3-209ENST00000569080 A0A0A0MQY5 61 aa2.29□□□□□ -2.04
CDH3-209ENST00000569080 KTN1-AS1Q86SY8 53 aa2.27□□□□□ -2.05
CDH3-209ENST00000569080 KRTAP6-2Q3LI66 62 aa2.26□□□□□ -2.05
CDH3-209ENST00000569080 KRTAP5-8O75690 187 aa2.25□□□□□ -2.05
CDH3-209ENST00000569080 MUC5BQ9HC84 5762 aaPredicted RBP2.23□□□□□ -2.05
CDH3-209ENST00000569080 OBSCNQ5VST9 7968 aa2.22□□□□□ -2.05
CDH3-209ENST00000569080 AHNAKQ09666 5890 aaKnown RBP2.2□□□□□ -2.06
CDH3-209ENST00000569080 MT3P25713 68 aa2.2□□□□□ -2.06
CDH3-209ENST00000569080 MUC5ACP98088 5654 aa2.19□□□□□ -2.06
CDH3-209ENST00000569080 KRTAP5-1Q6L8H4 278 aa2.12□□□□□ -2.07
CDH3-209ENST00000569080 LCE1EQ5T753 118 aa2□□□□□ -2.09
CDH3-209ENST00000569080 PRAC1Q96KF2 57 aa1.98□□□□□ -2.09
CDH3-209ENST00000569080 NDUFAF8A1L188 74 aa1.97□□□□□ -2.09
CDH3-209ENST00000569080 LCE1CQ5T751 118 aa1.86□□□□□ -2.11
CDH3-209ENST00000569080 LCE1BQ5T7P3 118 aa1.86□□□□□ -2.11
CDH3-209ENST00000569080 KRTAP5-11Q6L8G4 156 aa1.85□□□□□ -2.11
CDH3-209ENST00000569080 LCE1FQ5T754 118 aa1.81□□□□□ -2.12
CDH3-209ENST00000569080 KRTAP5-6Q6L8G9 129 aaPredicted RBP1.8□□□□□ -2.12
CDH3-209ENST00000569080 LUZP6Q538Z0 58 aa1.76□□□□□ -2.13
CDH3-209ENST00000569080 LCE3DQ9BYE3 92 aa1.74□□□□□ -2.13
CDH3-209ENST00000569080 LCE3EQ5T5B0 92 aa1.63□□□□□ -2.15
CDH3-209ENST00000569080 INE1O15225 51 aa1.59□□□□□ -2.15
CDH3-209ENST00000569080 KRTAP21-2Q3LI59 83 aa1.57□□□□□ -2.16
CDH3-209ENST00000569080 KRTAP4-4Q9BYR3 166 aa1.48□□□□□ -2.17
CDH3-209ENST00000569080 PHGR1C9JFL3 82 aa1.46□□□□□ -2.18
CDH3-209ENST00000569080 MUC19Q7Z5P9 8384 aa1.37□□□□□ -2.19
CDH3-209ENST00000569080 PRM1P04553 51 aa1.22□□□□□ -2.21
CDH3-209ENST00000569080 KRTAP21-1Q3LI58 79 aa1.11□□□□□ -2.23
CDH3-209ENST00000569080 MUC16Q8WXI7 14507 aa0.99□□□□□ -2.25
Retrieved 78 of 20,778 RNA–protein pairs in 49.8 ms