RNA–Protein interactions for RNA: ENST00000568139.5

CLK3-221, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 918 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-221ENST00000568139 KRTAP9-4Q9BYQ2 154 aa5.97□□□□□ -1.45
CLK3-221ENST00000568139 A0A1B0GU33 70 aa5.95□□□□□ -1.46
CLK3-221ENST00000568139 COA5Q86WW8 74 aa5.94□□□□□ -1.46
CLK3-221ENST00000568139 KRTAP20-2Q3LI61 65 aa5.93□□□□□ -1.46
CLK3-221ENST00000568139 KRTAP4-7Q9BYR0 210 aa5.9□□□□□ -1.46
CLK3-221ENST00000568139 SPRR5A0A1B0GTR4 108 aa5.86□□□□□ -1.47
CLK3-221ENST00000568139 TNP1P09430 55 aa5.86□□□□□ -1.47
CLK3-221ENST00000568139 KRTAP5-5Q701N2 237 aaPredicted RBP5.83□□□□□ -1.48
CLK3-221ENST00000568139 SERP2Q8N6R1 65 aa5.79□□□□□ -1.48
CLK3-221ENST00000568139 SMIM26A0A096LP01 95 aa5.78□□□□□ -1.48
CLK3-221ENST00000568139 KRTAP12-4P60329 112 aa5.76□□□□□ -1.49
CLK3-221ENST00000568139 KRTAP12-3P60328 96 aa5.75□□□□□ -1.49
CLK3-221ENST00000568139 A8MU10 97 aa5.74□□□□□ -1.49
CLK3-221ENST00000568139 A0A1B0GU69 56 aa5.64□□□□□ -1.51
CLK3-221ENST00000568139 ANAPC13Q9BS18 74 aa5.63□□□□□ -1.51
CLK3-221ENST00000568139 SYNE1Q8NF91 8797 aaKnown RBP5.61□□□□□ -1.51
CLK3-221ENST00000568139 SVIPQ8NHG7 77 aa5.6□□□□□ -1.51
CLK3-221ENST00000568139 H7BZZ5 65 aa5.52□□□□□ -1.53
CLK3-221ENST00000568139 KRTAP4-11Q9BYQ6 195 aa5.52□□□□□ -1.53
CLK3-221ENST00000568139 KRTAP4-2Q9BYR5 136 aa5.5□□□□□ -1.53
CLK3-221ENST00000568139 COX7CP15954 63 aa5.48□□□□□ -1.53
CLK3-221ENST00000568139 KRTAP19-4Q3LI73 84 aa5.43□□□□□ -1.54
CLK3-221ENST00000568139 KRTAP5-2Q701N4 177 aa5.42□□□□□ -1.54
CLK3-221ENST00000568139 CCDC179H3BU77 68 aa5.41□□□□□ -1.54
CLK3-221ENST00000568139 RPS28P62857 69 aaKnown RBP5.39□□□□□ -1.55
CLK3-221ENST00000568139 KRTAP5-8O75690 187 aa5.35□□□□□ -1.55
CLK3-221ENST00000568139 TMEM258P61165 79 aa5.35□□□□□ -1.55
CLK3-221ENST00000568139 PRR15LQ9BU68 103 aa5.33□□□□□ -1.56
CLK3-221ENST00000568139 KRTAP25-1Q3LHN0 102 aa5.32□□□□□ -1.56
CLK3-221ENST00000568139 MT1AP04731 61 aa5.29□□□□□ -1.56
CLK3-221ENST00000568139 KRTAP6-1Q3LI64 71 aa5.29□□□□□ -1.56
CLK3-221ENST00000568139 LCE3CQ5T5A8 94 aa5.26□□□□□ -1.57
CLK3-221ENST00000568139 MUC5ACP98088 5654 aa5.25□□□□□ -1.57
CLK3-221ENST00000568139 ATP5EP56381 51 aaPredicted RBP5.24□□□□□ -1.57
CLK3-221ENST00000568139 KRTAP15-1Q3LI76 137 aa5.23□□□□□ -1.57
CLK3-221ENST00000568139 LINC01558Q9Y6Z2 57 aa5.22□□□□□ -1.57
CLK3-221ENST00000568139 MUC5BQ9HC84 5762 aaPredicted RBP5.21□□□□□ -1.58
CLK3-221ENST00000568139 AHNAKQ09666 5890 aaKnown RBP5.2□□□□□ -1.58
CLK3-221ENST00000568139 UQCR11O14957 56 aa5.16□□□□□ -1.58
CLK3-221ENST00000568139 KRTAP23-1A1A580 65 aa5.13□□□□□ -1.59
CLK3-221ENST00000568139 KRTAP6-2Q3LI66 62 aa5.12□□□□□ -1.59
CLK3-221ENST00000568139 OBSCNQ5VST9 7968 aa5.09□□□□□ -1.6
CLK3-221ENST00000568139 PRO0628Q9UI54 55 aa5.02□□□□□ -1.61
CLK3-221ENST00000568139 MIR22HGQ0VDD5 57 aa5□□□□□ -1.61
CLK3-221ENST00000568139 KRTAP9-6A8MVA2 160 aa4.99□□□□□ -1.61
CLK3-221ENST00000568139 K7ERS5 55 aa4.97□□□□□ -1.61
CLK3-221ENST00000568139 V9GYY9 64 aa4.96□□□□□ -1.62
CLK3-221ENST00000568139 KRTAP5-1Q6L8H4 278 aa4.94□□□□□ -1.62
CLK3-221ENST00000568139 Q1T7F1 81 aa4.9□□□□□ -1.63
CLK3-221ENST00000568139 MT3P25713 68 aa4.85□□□□□ -1.63
CLK3-221ENST00000568139 BRK1Q8WUW1 75 aa4.83□□□□□ -1.64
CLK3-221ENST00000568139 PMAIP1Q13794 54 aa4.7□□□□□ -1.66
CLK3-221ENST00000568139 PSPHP1O15172 72 aa4.67□□□□□ -1.66
CLK3-221ENST00000568139 CDC42SE1Q9NRR8 79 aa4.66□□□□□ -1.66
CLK3-221ENST00000568139 A6NED7 52 aa4.61□□□□□ -1.67
CLK3-221ENST00000568139 LCE1EQ5T753 118 aa4.58□□□□□ -1.68
CLK3-221ENST00000568139 KTN1-AS1Q86SY8 53 aa4.58□□□□□ -1.68
CLK3-221ENST00000568139 ROMO1P60602 79 aa4.56□□□□□ -1.68
CLK3-221ENST00000568139 LCE1BQ5T7P3 118 aa4.31□□□□□ -1.72
CLK3-221ENST00000568139 H3BS24 57 aa4.28□□□□□ -1.72
CLK3-221ENST00000568139 LCE1CQ5T751 118 aa4.25□□□□□ -1.73
CLK3-221ENST00000568139 PRAC1Q96KF2 57 aa4.14□□□□□ -1.75
CLK3-221ENST00000568139 KRTAP5-11Q6L8G4 156 aa3.91□□□□□ -1.78
CLK3-221ENST00000568139 LCE1FQ5T754 118 aa3.88□□□□□ -1.79
CLK3-221ENST00000568139 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.82□□□□□ -1.8
CLK3-221ENST00000568139 LCE3DQ9BYE3 92 aa3.7□□□□□ -1.82
CLK3-221ENST00000568139 PHGR1C9JFL3 82 aa3.68□□□□□ -1.82
CLK3-221ENST00000568139 NDUFAF8A1L188 74 aa3.58□□□□□ -1.84
CLK3-221ENST00000568139 LUZP6Q538Z0 58 aa3.52□□□□□ -1.85
CLK3-221ENST00000568139 KRTAP21-2Q3LI59 83 aa3.49□□□□□ -1.85
CLK3-221ENST00000568139 A0A0A0MQY5 61 aa3.42□□□□□ -1.86
CLK3-221ENST00000568139 LCE3EQ5T5B0 92 aa3.41□□□□□ -1.86
CLK3-221ENST00000568139 KRTAP4-4Q9BYR3 166 aa3.24□□□□□ -1.89
CLK3-221ENST00000568139 MUC19Q7Z5P9 8384 aa3.14□□□□□ -1.91
CLK3-221ENST00000568139 INE1O15225 51 aa3.13□□□□□ -1.91
CLK3-221ENST00000568139 KRTAP21-1Q3LI58 79 aa2.81□□□□□ -1.96
CLK3-221ENST00000568139 PRM1P04553 51 aa2.3□□□□□ -2.04
CLK3-221ENST00000568139 MUC16Q8WXI7 14507 aa2.3□□□□□ -2.04
Retrieved 78 of 20,778 RNA–protein pairs in 107.3 ms