RNA–Protein interactions for RNA: ENST00000567890.1

NR4A1-222, Transcript of nuclear receptor subfamily 4 group A member 1, human

TSL 5

Gene NR4A1, Length 612 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
NR4A1-222	ENST00000567890	MT1G	P13640	62 aa		4.46	□□□□□ -1.7
NR4A1-222	ENST00000567890	CYSTM1	Q9H1C7	97 aa		4.46	□□□□□ -1.7
NR4A1-222	ENST00000567890	DST	Q03001	7570 aa	Known RBP	4.46	□□□□□ -1.7
NR4A1-222	ENST00000567890	KRTAP19-5	Q3LI72	72 aa		4.44	□□□□□ -1.7
NR4A1-222	ENST00000567890	PCP4	P48539	62 aa		4.42	□□□□□ -1.7
NR4A1-222	ENST00000567890	PRR15L	Q9BU68	103 aa		4.4	□□□□□ -1.71
NR4A1-222	ENST00000567890	TNP1	P09430	55 aa		4.39	□□□□□ -1.71
NR4A1-222	ENST00000567890	ATP5E	P56381	51 aa	Predicted RBP	4.38	□□□□□ -1.71
NR4A1-222	ENST00000567890		A8MU10	97 aa		4.37	□□□□□ -1.71
NR4A1-222	ENST00000567890	CCDC179	H3BU77	68 aa		4.35	□□□□□ -1.71
NR4A1-222	ENST00000567890	MT1M	Q8N339	61 aa		4.32	□□□□□ -1.72
NR4A1-222	ENST00000567890	MT1L	Q93083	61 aa		4.32	□□□□□ -1.72
NR4A1-222	ENST00000567890	TMEM258	P61165	79 aa		4.31	□□□□□ -1.72
NR4A1-222	ENST00000567890	LCE3A	Q5TA76	89 aa		4.31	□□□□□ -1.72
NR4A1-222	ENST00000567890	C10orf95	Q9H7T3	257 aa		4.3	□□□□□ -1.72
NR4A1-222	ENST00000567890	LINC01558	Q9Y6Z2	57 aa		4.27	□□□□□ -1.73
NR4A1-222	ENST00000567890	MT4	P47944	62 aa		4.24	□□□□□ -1.73
NR4A1-222	ENST00000567890	HMCN1	Q96RW7	5635 aa		4.23	□□□□□ -1.73
NR4A1-222	ENST00000567890	UQCR11	O14957	56 aa		4.22	□□□□□ -1.73
NR4A1-222	ENST00000567890	KRTAP4-3	Q9BYR4	195 aa		4.2	□□□□□ -1.74
NR4A1-222	ENST00000567890	KRTAP5-4	Q6L8H1	288 aa		4.18	□□□□□ -1.74
NR4A1-222	ENST00000567890	KRTAP12-3	P60328	96 aa		4.17	□□□□□ -1.74
NR4A1-222	ENST00000567890	SVIP	Q8NHG7	77 aa		4.17	□□□□□ -1.74
NR4A1-222	ENST00000567890		A0A0A0MQY5	61 aa		4.15	□□□□□ -1.75
NR4A1-222	ENST00000567890	RPS28	P62857	69 aa	Known RBP	4.13	□□□□□ -1.75
NR4A1-222	ENST00000567890	KRTAP25-1	Q3LHN0	102 aa		4.12	□□□□□ -1.75
NR4A1-222	ENST00000567890		K7ERS5	55 aa		4.11	□□□□□ -1.75
NR4A1-222	ENST00000567890	AHNAK2	Q8IVF2	5795 aa		4.09	□□□□□ -1.75
NR4A1-222	ENST00000567890	MIR22HG	Q0VDD5	57 aa		4.08	□□□□□ -1.76
NR4A1-222	ENST00000567890		V9GYY9	64 aa		4.06	□□□□□ -1.76
NR4A1-222	ENST00000567890	MT3	P25713	68 aa		4.05	□□□□□ -1.76
NR4A1-222	ENST00000567890	KRTAP5-10	Q6L8G5	202 aa		4	□□□□□ -1.77
NR4A1-222	ENST00000567890	SPRR5	A0A1B0GTR4	108 aa		3.98	□□□□□ -1.77
NR4A1-222	ENST00000567890		Q1T7F1	81 aa		3.97	□□□□□ -1.77
NR4A1-222	ENST00000567890	KRTAP5-5	Q701N2	237 aa	Predicted RBP	3.97	□□□□□ -1.77
NR4A1-222	ENST00000567890	KRTAP12-4	P60329	112 aa		3.96	□□□□□ -1.78
NR4A1-222	ENST00000567890	KRTAP5-11	Q6L8G4	156 aa		3.95	□□□□□ -1.78
NR4A1-222	ENST00000567890	KRTAP20-2	Q3LI61	65 aa		3.94	□□□□□ -1.78
NR4A1-222	ENST00000567890	PSPHP1	O15172	72 aa		3.91	□□□□□ -1.78
NR4A1-222	ENST00000567890	LCE1E	Q5T753	118 aa		3.9	□□□□□ -1.79
NR4A1-222	ENST00000567890	KRTAP5-7	Q6L8G8	165 aa		3.88	□□□□□ -1.79
NR4A1-222	ENST00000567890	KRTAP5-6	Q6L8G9	129 aa	Predicted RBP	3.84	□□□□□ -1.79
NR4A1-222	ENST00000567890	CDC42SE1	Q9NRR8	79 aa		3.84	□□□□□ -1.79
NR4A1-222	ENST00000567890		A6NED7	52 aa		3.83	□□□□□ -1.8
NR4A1-222	ENST00000567890	LCE3C	Q5T5A8	94 aa		3.83	□□□□□ -1.8
NR4A1-222	ENST00000567890	SYNE1	Q8NF91	8797 aa	Known RBP	3.82	□□□□□ -1.8
NR4A1-222	ENST00000567890	ROMO1	P60602	79 aa		3.74	□□□□□ -1.81
NR4A1-222	ENST00000567890	MT1A	P04731	61 aa		3.7	□□□□□ -1.82
NR4A1-222	ENST00000567890	BRK1	Q8WUW1	75 aa		3.68	□□□□□ -1.82
NR4A1-222	ENST00000567890	LCE1F	Q5T754	118 aa		3.67	□□□□□ -1.82
NR4A1-222	ENST00000567890	KRTAP6-1	Q3LI64	71 aa		3.65	□□□□□ -1.83
NR4A1-222	ENST00000567890	KRTAP5-2	Q701N4	177 aa		3.65	□□□□□ -1.83
NR4A1-222	ENST00000567890	PRO0628	Q9UI54	55 aa		3.58	□□□□□ -1.84
NR4A1-222	ENST00000567890	KRTAP9-6	A8MVA2	160 aa		3.56	□□□□□ -1.84
NR4A1-222	ENST00000567890	KRTAP6-2	Q3LI66	62 aa		3.51	□□□□□ -1.85
NR4A1-222	ENST00000567890	PMAIP1	Q13794	54 aa		3.5	□□□□□ -1.85
NR4A1-222	ENST00000567890	KRTAP5-8	O75690	187 aa		3.48	□□□□□ -1.85
NR4A1-222	ENST00000567890	NDUFAF8	A1L188	74 aa		3.46	□□□□□ -1.86
NR4A1-222	ENST00000567890	PRAC1	Q96KF2	57 aa		3.44	□□□□□ -1.86
NR4A1-222	ENST00000567890	OBSCN	Q5VST9	7968 aa		3.41	□□□□□ -1.86
NR4A1-222	ENST00000567890	AHNAK	Q09666	5890 aa	Known RBP	3.38	□□□□□ -1.87
NR4A1-222	ENST00000567890	KRTAP5-1	Q6L8H4	278 aa		3.38	□□□□□ -1.87
NR4A1-222	ENST00000567890	MUC5B	Q9HC84	5762 aa	Predicted RBP	3.37	□□□□□ -1.87
NR4A1-222	ENST00000567890	MUC5AC	P98088	5654 aa		3.37	□□□□□ -1.87
NR4A1-222	ENST00000567890	KTN1-AS1	Q86SY8	53 aa		3.33	□□□□□ -1.88
NR4A1-222	ENST00000567890	KRTAP4-4	Q9BYR3	166 aa		3.23	□□□□□ -1.89
NR4A1-222	ENST00000567890	LCE3E	Q5T5B0	92 aa		3.18	□□□□□ -1.9
NR4A1-222	ENST00000567890	LCE1B	Q5T7P3	118 aa		2.96	□□□□□ -1.94
NR4A1-222	ENST00000567890	LCE1C	Q5T751	118 aa		2.94	□□□□□ -1.94
NR4A1-222	ENST00000567890	LUZP6	Q538Z0	58 aa		2.77	□□□□□ -1.97
NR4A1-222	ENST00000567890	LCE3D	Q9BYE3	92 aa		2.77	□□□□□ -1.97
NR4A1-222	ENST00000567890	KRTAP21-2	Q3LI59	83 aa		2.41	□□□□□ -2.02
NR4A1-222	ENST00000567890	PHGR1	C9JFL3	82 aa		2.36	□□□□□ -2.03
NR4A1-222	ENST00000567890	INE1	O15225	51 aa		2.19	□□□□□ -2.06
NR4A1-222	ENST00000567890	MUC19	Q7Z5P9	8384 aa		2.11	□□□□□ -2.07
NR4A1-222	ENST00000567890	PRM1	P04553	51 aa		1.88	□□□□□ -2.11
NR4A1-222	ENST00000567890	KRTAP21-1	Q3LI58	79 aa		1.82	□□□□□ -2.12
NR4A1-222	ENST00000567890	MUC16	Q8WXI7	14507 aa		1.55	□□□□□ -2.16

Retrieved 78 of 20,778 RNA–protein pairs in 51.8 ms