RNA–Protein interactions for RNA: ENST00000566354.1

VPS4A-204, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 1 (best)

Gene VPS4A, Length 2,329 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-204ENST00000566354 MACF1Q9UPN3 7388 aaKnown RBP4.84□□□□□ -1.63
VPS4A-204ENST00000566354 KRTAP9-6A0A140TA67 174 aa4.8□□□□□ -1.64
VPS4A-204ENST00000566354 KRTAP9-7A8MTY7 169 aa4.79□□□□□ -1.64
VPS4A-204ENST00000566354 LCE4AQ5TA78 99 aa4.78□□□□□ -1.64
VPS4A-204ENST00000566354 SYNE2Q8WXH0 6885 aaKnown RBP4.72□□□□□ -1.65
VPS4A-204ENST00000566354 KRTAP19-7Q3SYF9 63 aa4.67□□□□□ -1.66
VPS4A-204ENST00000566354 KRTAP9-6A8MVA2 160 aa4.66□□□□□ -1.66
VPS4A-204ENST00000566354 KRTAP9-1A8MXZ3 250 aaPredicted RBP4.62□□□□□ -1.67
VPS4A-204ENST00000566354 MUC12Q9UKN1 5478 aa4.61□□□□□ -1.67
VPS4A-204ENST00000566354 LCE1FQ5T754 118 aa4.59□□□□□ -1.67
VPS4A-204ENST00000566354 MT1EP04732 61 aa4.58□□□□□ -1.68
VPS4A-204ENST00000566354 KRTAP2-3P0C7H8 128 aa4.57□□□□□ -1.68
VPS4A-204ENST00000566354 SPRR2FQ96RM1 72 aa4.57□□□□□ -1.68
VPS4A-204ENST00000566354 KRTAP2-4Q9BYR9 128 aa4.57□□□□□ -1.68
VPS4A-204ENST00000566354 KRTAP2-1Q9BYU5 128 aa4.57□□□□□ -1.68
VPS4A-204ENST00000566354 KRTAP4-7Q9BYR0 210 aa4.54□□□□□ -1.68
VPS4A-204ENST00000566354 MT1LQ93083 61 aa4.52□□□□□ -1.69
VPS4A-204ENST00000566354 KRTAP5-9P26371 169 aa4.51□□□□□ -1.69
VPS4A-204ENST00000566354 KRTAP2-2Q9BYT5 123 aa4.5□□□□□ -1.69
VPS4A-204ENST00000566354 MDN1Q9NU22 5596 aa4.46□□□□□ -1.69
VPS4A-204ENST00000566354 KRTAP6-3Q3LI67 103 aa4.46□□□□□ -1.7
VPS4A-204ENST00000566354 KRTAP19-3Q7Z4W3 81 aa4.41□□□□□ -1.7
VPS4A-204ENST00000566354 LCE1AQ5T7P2 110 aa4.4□□□□□ -1.71
VPS4A-204ENST00000566354 MT1GP13640 62 aa4.35□□□□□ -1.71
VPS4A-204ENST00000566354 SPRR2EP22531 72 aa4.34□□□□□ -1.71
VPS4A-204ENST00000566354 SPRR2BP35325 72 aa4.34□□□□□ -1.71
VPS4A-204ENST00000566354 SPRR2AP35326 72 aa4.34□□□□□ -1.71
VPS4A-204ENST00000566354 MT1MQ8N339 61 aa4.32□□□□□ -1.72
VPS4A-204ENST00000566354 DSTQ03001 7570 aaKnown RBP4.3□□□□□ -1.72
VPS4A-204ENST00000566354 KRTAP4-3Q9BYR4 195 aa4.29□□□□□ -1.72
VPS4A-204ENST00000566354 NEBP20929 6669 aa4.23□□□□□ -1.73
VPS4A-204ENST00000566354 LOC100996750A0A140TA64 210 aa4.23□□□□□ -1.73
VPS4A-204ENST00000566354 SPRR2DP22532 72 aa4.18□□□□□ -1.74
VPS4A-204ENST00000566354 MT3P25713 68 aa4.05□□□□□ -1.76
VPS4A-204ENST00000566354 KRTAP12-4P60329 112 aa4.05□□□□□ -1.76
VPS4A-204ENST00000566354 LCE1EQ5T753 118 aa4.03□□□□□ -1.76
VPS4A-204ENST00000566354 LCE3BQ5TA77 95 aa4.02□□□□□ -1.77
VPS4A-204ENST00000566354 LCE3EQ5T5B0 92 aa3.98□□□□□ -1.77
VPS4A-204ENST00000566354 KRTAP4-12Q9BQ66 201 aa3.92□□□□□ -1.78
VPS4A-204ENST00000566354 KRTAP5-5Q701N2 237 aaPredicted RBP3.9□□□□□ -1.79
VPS4A-204ENST00000566354 KRTAP4-6Q9BYQ5 205 aa3.9□□□□□ -1.79
VPS4A-204ENST00000566354 MT1AP04731 61 aa3.89□□□□□ -1.79
VPS4A-204ENST00000566354 KRTAP20-1Q3LI63 56 aa3.87□□□□□ -1.79
VPS4A-204ENST00000566354 LCE1DQ5T752 114 aa3.84□□□□□ -1.79
VPS4A-204ENST00000566354 KRTAP6-1Q3LI64 71 aa3.82□□□□□ -1.8
VPS4A-204ENST00000566354 KRTAP4-9Q9BYQ8 210 aa3.82□□□□□ -1.8
VPS4A-204ENST00000566354 SYNE1Q8NF91 8797 aaKnown RBP3.79□□□□□ -1.8
VPS4A-204ENST00000566354 LCE3DQ9BYE3 92 aa3.76□□□□□ -1.81
VPS4A-204ENST00000566354 KRTAP5-4Q6L8H1 288 aa3.75□□□□□ -1.81
VPS4A-204ENST00000566354 MT4P47944 62 aa3.66□□□□□ -1.82
VPS4A-204ENST00000566354 PRM1P04553 51 aa3.6□□□□□ -1.83
VPS4A-204ENST00000566354 HMCN1Q96RW7 5635 aa3.59□□□□□ -1.83
VPS4A-204ENST00000566354 KRTAP20-2Q3LI61 65 aa3.52□□□□□ -1.85
VPS4A-204ENST00000566354 KRTAP6-2Q3LI66 62 aa3.5□□□□□ -1.85
VPS4A-204ENST00000566354 OBSCNQ5VST9 7968 aa3.41□□□□□ -1.86
VPS4A-204ENST00000566354 KRTAP5-3Q6L8H2 238 aa3.39□□□□□ -1.87
VPS4A-204ENST00000566354 KRTAP5-2Q701N4 177 aa3.38□□□□□ -1.87
VPS4A-204ENST00000566354 AHNAK2Q8IVF2 5795 aa3.19□□□□□ -1.9
VPS4A-204ENST00000566354 KRTAP4-2Q9BYR5 136 aa3.13□□□□□ -1.91
VPS4A-204ENST00000566354 KRTAP4-11Q9BYQ6 195 aa3.12□□□□□ -1.91
VPS4A-204ENST00000566354 KRTAP5-10Q6L8G5 202 aa3.02□□□□□ -1.93
VPS4A-204ENST00000566354 GPR98Q8WXG9 6306 aa2.96□□□□□ -1.94
VPS4A-204ENST00000566354 KRTAP5-8O75690 187 aa2.96□□□□□ -1.94
VPS4A-204ENST00000566354 KRTAP5-1Q6L8H4 278 aa2.96□□□□□ -1.94
VPS4A-204ENST00000566354 MUC5ACP98088 5654 aa2.86□□□□□ -1.95
VPS4A-204ENST00000566354 LCE1BQ5T7P3 118 aa2.85□□□□□ -1.95
VPS4A-204ENST00000566354 KRTAP5-7Q6L8G8 165 aa2.82□□□□□ -1.96
VPS4A-204ENST00000566354 LCE1CQ5T751 118 aa2.79□□□□□ -1.96
VPS4A-204ENST00000566354 MUC5BQ9HC84 5762 aaPredicted RBP2.62□□□□□ -1.99
VPS4A-204ENST00000566354 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.59□□□□□ -2
VPS4A-204ENST00000566354 KRTAP21-1Q3LI58 79 aa2.53□□□□□ -2
VPS4A-204ENST00000566354 MUC19Q7Z5P9 8384 aa2.49□□□□□ -2.01
VPS4A-204ENST00000566354 KRTAP21-2Q3LI59 83 aa2.48□□□□□ -2.01
VPS4A-204ENST00000566354 KRTAP5-11Q6L8G4 156 aa2.47□□□□□ -2.01
VPS4A-204ENST00000566354 AHNAKQ09666 5890 aaKnown RBP2.41□□□□□ -2.02
VPS4A-204ENST00000566354 KRTAP4-4Q9BYR3 166 aa2.25□□□□□ -2.05
VPS4A-204ENST00000566354 PHGR1C9JFL3 82 aa2.13□□□□□ -2.07
VPS4A-204ENST00000566354 MUC16Q8WXI7 14507 aa1.33□□□□□ -2.2
Retrieved 78 of 20,778 RNA–protein pairs in 148.9 ms