RNA–Protein interactions for RNA: ENST00000566057.5

CLN3-221, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 931 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-221ENST00000566057 UQCR11O14957 56 aa6.45□□□□□ -1.38
CLN3-221ENST00000566057 KRTAP4-3Q9BYR4 195 aa6.41□□□□□ -1.38
CLN3-221ENST00000566057 LCE1DQ5T752 114 aa6.33□□□□□ -1.4
CLN3-221ENST00000566057 KRTAP12-3P60328 96 aa6.32□□□□□ -1.4
CLN3-221ENST00000566057 MIR22HGQ0VDD5 57 aa6.32□□□□□ -1.4
CLN3-221ENST00000566057 PCP4P48539 62 aa6.31□□□□□ -1.4
CLN3-221ENST00000566057 LCE4AQ5TA78 99 aa6.29□□□□□ -1.4
CLN3-221ENST00000566057 KRTAP4-7Q9BYR0 210 aa6.27□□□□□ -1.41
CLN3-221ENST00000566057 MT4P47944 62 aa6.26□□□□□ -1.41
CLN3-221ENST00000566057 GPR98Q8WXG9 6306 aa6.25□□□□□ -1.41
CLN3-221ENST00000566057 PSPHP1O15172 72 aa6.22□□□□□ -1.41
CLN3-221ENST00000566057 HMCN1Q96RW7 5635 aa6.22□□□□□ -1.41
CLN3-221ENST00000566057 KRTAP5-4Q6L8H1 288 aa6.21□□□□□ -1.42
CLN3-221ENST00000566057 KRTAP25-1Q3LHN0 102 aa6.2□□□□□ -1.42
CLN3-221ENST00000566057 Q1T7F1 81 aa6.17□□□□□ -1.42
CLN3-221ENST00000566057 V9GYY9 64 aa6.17□□□□□ -1.42
CLN3-221ENST00000566057 K7ERS5 55 aa6.15□□□□□ -1.42
CLN3-221ENST00000566057 KRTAP4-6Q9BYQ5 205 aa6.11□□□□□ -1.43
CLN3-221ENST00000566057 AHNAK2Q8IVF2 5795 aa5.98□□□□□ -1.45
CLN3-221ENST00000566057 KRTAP5-5Q701N2 237 aaPredicted RBP5.98□□□□□ -1.45
CLN3-221ENST00000566057 KRTAP23-1A1A580 65 aa5.97□□□□□ -1.45
CLN3-221ENST00000566057 A6NED7 52 aa5.97□□□□□ -1.45
CLN3-221ENST00000566057 LOC100996750A0A140TA64 210 aa5.94□□□□□ -1.46
CLN3-221ENST00000566057 KRTAP19-4Q3LI73 84 aa5.91□□□□□ -1.46
CLN3-221ENST00000566057 KRTAP15-1Q3LI76 137 aa5.9□□□□□ -1.46
CLN3-221ENST00000566057 KRTAP5-10Q6L8G5 202 aa5.87□□□□□ -1.47
CLN3-221ENST00000566057 KRTAP20-2Q3LI61 65 aa5.86□□□□□ -1.47
CLN3-221ENST00000566057 CDC42SE1Q9NRR8 79 aa5.84□□□□□ -1.47
CLN3-221ENST00000566057 LCE3CQ5T5A8 94 aa5.83□□□□□ -1.48
CLN3-221ENST00000566057 SPRR5A0A1B0GTR4 108 aa5.82□□□□□ -1.48
CLN3-221ENST00000566057 RPS28P62857 69 aaKnown RBP5.82□□□□□ -1.48
CLN3-221ENST00000566057 KRTAP12-4P60329 112 aa5.79□□□□□ -1.48
CLN3-221ENST00000566057 ROMO1P60602 79 aa5.77□□□□□ -1.49
CLN3-221ENST00000566057 KRTAP5-3Q6L8H2 238 aa5.74□□□□□ -1.49
CLN3-221ENST00000566057 SYNE1Q8NF91 8797 aaKnown RBP5.73□□□□□ -1.49
CLN3-221ENST00000566057 KRTAP5-7Q6L8G8 165 aa5.63□□□□□ -1.51
CLN3-221ENST00000566057 KRTAP9-6A8MVA2 160 aa5.55□□□□□ -1.52
CLN3-221ENST00000566057 MT1AP04731 61 aa5.55□□□□□ -1.52
CLN3-221ENST00000566057 KRTAP6-1Q3LI64 71 aa5.55□□□□□ -1.52
CLN3-221ENST00000566057 KRTAP5-2Q701N4 177 aa5.45□□□□□ -1.54
CLN3-221ENST00000566057 KRTAP9-4Q9BYQ2 154 aa5.38□□□□□ -1.55
CLN3-221ENST00000566057 KRTAP4-11Q9BYQ6 195 aa5.35□□□□□ -1.55
CLN3-221ENST00000566057 KRTAP6-2Q3LI66 62 aa5.3□□□□□ -1.56
CLN3-221ENST00000566057 PRO0628Q9UI54 55 aa5.25□□□□□ -1.57
CLN3-221ENST00000566057 KRTAP5-8O75690 187 aa5.18□□□□□ -1.58
CLN3-221ENST00000566057 OBSCNQ5VST9 7968 aa5.12□□□□□ -1.59
CLN3-221ENST00000566057 BRK1Q8WUW1 75 aa5.09□□□□□ -1.59
CLN3-221ENST00000566057 MT3P25713 68 aa5.07□□□□□ -1.6
CLN3-221ENST00000566057 PMAIP1Q13794 54 aa4.96□□□□□ -1.62
CLN3-221ENST00000566057 MUC5BQ9HC84 5762 aaPredicted RBP4.92□□□□□ -1.62
CLN3-221ENST00000566057 MUC5ACP98088 5654 aa4.9□□□□□ -1.62
CLN3-221ENST00000566057 KRTAP5-1Q6L8H4 278 aa4.89□□□□□ -1.63
CLN3-221ENST00000566057 KRTAP9-9Q9BYP9 154 aa4.88□□□□□ -1.63
CLN3-221ENST00000566057 AHNAKQ09666 5890 aaKnown RBP4.88□□□□□ -1.63
CLN3-221ENST00000566057 KTN1-AS1Q86SY8 53 aa4.76□□□□□ -1.65
CLN3-221ENST00000566057 LCE1EQ5T753 118 aa4.66□□□□□ -1.66
CLN3-221ENST00000566057 PRAC1Q96KF2 57 aa4.66□□□□□ -1.66
CLN3-221ENST00000566057 H3BS24 57 aa4.61□□□□□ -1.67
CLN3-221ENST00000566057 KRTAP4-2Q9BYR5 136 aa4.43□□□□□ -1.7
CLN3-221ENST00000566057 LCE1BQ5T7P3 118 aa4.4□□□□□ -1.71
CLN3-221ENST00000566057 LCE1CQ5T751 118 aa4.33□□□□□ -1.72
CLN3-221ENST00000566057 LCE3DQ9BYE3 92 aa4.19□□□□□ -1.74
CLN3-221ENST00000566057 A0A0A0MQY5 61 aa4.18□□□□□ -1.74
CLN3-221ENST00000566057 KRTAP4-12Q9BQ66 201 aa4.03□□□□□ -1.76
CLN3-221ENST00000566057 LCE3EQ5T5B0 92 aa3.94□□□□□ -1.78
CLN3-221ENST00000566057 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.94□□□□□ -1.78
CLN3-221ENST00000566057 KRTAP5-11Q6L8G4 156 aa3.91□□□□□ -1.78
CLN3-221ENST00000566057 LUZP6Q538Z0 58 aa3.86□□□□□ -1.79
CLN3-221ENST00000566057 LCE1FQ5T754 118 aa3.79□□□□□ -1.8
CLN3-221ENST00000566057 NDUFAF8A1L188 74 aa3.78□□□□□ -1.8
CLN3-221ENST00000566057 KRTAP21-2Q3LI59 83 aa3.66□□□□□ -1.82
CLN3-221ENST00000566057 PHGR1C9JFL3 82 aa3.41□□□□□ -1.86
CLN3-221ENST00000566057 KRTAP4-4Q9BYR3 166 aa3.37□□□□□ -1.87
CLN3-221ENST00000566057 INE1O15225 51 aa3.31□□□□□ -1.88
CLN3-221ENST00000566057 MUC19Q7Z5P9 8384 aa3.16□□□□□ -1.9
CLN3-221ENST00000566057 PRM1P04553 51 aa2.97□□□□□ -1.93
CLN3-221ENST00000566057 KRTAP21-1Q3LI58 79 aa2.57□□□□□ -2
CLN3-221ENST00000566057 MUC16Q8WXI7 14507 aa2.26□□□□□ -2.05
Retrieved 78 of 20,778 RNA–protein pairs in 122.1 ms