RNA–Protein interactions for RNA: ENST00000565778.6

CLN3-219, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 688 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-219ENST00000565778 LCE1DQ5T752 114 aa7.2□□□□□ -1.26
CLN3-219ENST00000565778 KRTAP4-3Q9BYR4 195 aa7.2□□□□□ -1.26
CLN3-219ENST00000565778 LCE4AQ5TA78 99 aa7.19□□□□□ -1.26
CLN3-219ENST00000565778 GPR98Q8WXG9 6306 aa7.16□□□□□ -1.26
CLN3-219ENST00000565778 MT4P47944 62 aa7.14□□□□□ -1.27
CLN3-219ENST00000565778 KRTAP12-3P60328 96 aa7.12□□□□□ -1.27
CLN3-219ENST00000565778 MIR22HGQ0VDD5 57 aa7.07□□□□□ -1.28
CLN3-219ENST00000565778 KRTAP4-7Q9BYR0 210 aa7.03□□□□□ -1.28
CLN3-219ENST00000565778 KRTAP5-4Q6L8H1 288 aa7.01□□□□□ -1.29
CLN3-219ENST00000565778 HMCN1Q96RW7 5635 aa7.01□□□□□ -1.29
CLN3-219ENST00000565778 K7ERS5 55 aa6.97□□□□□ -1.29
CLN3-219ENST00000565778 KRTAP25-1Q3LHN0 102 aa6.97□□□□□ -1.29
CLN3-219ENST00000565778 KRTAP4-6Q9BYQ5 205 aa6.92□□□□□ -1.3
CLN3-219ENST00000565778 PSPHP1O15172 72 aa6.9□□□□□ -1.3
CLN3-219ENST00000565778 V9GYY9 64 aa6.9□□□□□ -1.3
CLN3-219ENST00000565778 Q1T7F1 81 aa6.82□□□□□ -1.32
CLN3-219ENST00000565778 AHNAK2Q8IVF2 5795 aa6.78□□□□□ -1.32
CLN3-219ENST00000565778 KRTAP5-5Q701N2 237 aaPredicted RBP6.71□□□□□ -1.34
CLN3-219ENST00000565778 KRTAP19-4Q3LI73 84 aa6.7□□□□□ -1.34
CLN3-219ENST00000565778 KRTAP23-1A1A580 65 aa6.69□□□□□ -1.34
CLN3-219ENST00000565778 KRTAP5-10Q6L8G5 202 aa6.68□□□□□ -1.34
CLN3-219ENST00000565778 LOC100996750A0A140TA64 210 aa6.66□□□□□ -1.34
CLN3-219ENST00000565778 A6NED7 52 aa6.66□□□□□ -1.34
CLN3-219ENST00000565778 KRTAP20-2Q3LI61 65 aa6.64□□□□□ -1.35
CLN3-219ENST00000565778 KRTAP15-1Q3LI76 137 aa6.64□□□□□ -1.35
CLN3-219ENST00000565778 KRTAP12-4P60329 112 aa6.63□□□□□ -1.35
CLN3-219ENST00000565778 SPRR5A0A1B0GTR4 108 aa6.6□□□□□ -1.35
CLN3-219ENST00000565778 CDC42SE1Q9NRR8 79 aa6.56□□□□□ -1.36
CLN3-219ENST00000565778 LCE3CQ5T5A8 94 aa6.55□□□□□ -1.36
CLN3-219ENST00000565778 KRTAP5-3Q6L8H2 238 aa6.55□□□□□ -1.36
CLN3-219ENST00000565778 SYNE1Q8NF91 8797 aaKnown RBP6.5□□□□□ -1.37
CLN3-219ENST00000565778 ROMO1P60602 79 aa6.45□□□□□ -1.38
CLN3-219ENST00000565778 KRTAP5-7Q6L8G8 165 aa6.43□□□□□ -1.38
CLN3-219ENST00000565778 RPS28P62857 69 aaKnown RBP6.4□□□□□ -1.38
CLN3-219ENST00000565778 MT1AP04731 61 aa6.26□□□□□ -1.41
CLN3-219ENST00000565778 KRTAP6-1Q3LI64 71 aa6.24□□□□□ -1.41
CLN3-219ENST00000565778 PCP4P48539 62 aa6.2□□□□□ -1.42
CLN3-219ENST00000565778 KRTAP9-6A8MVA2 160 aa6.15□□□□□ -1.42
CLN3-219ENST00000565778 KRTAP5-2Q701N4 177 aa6.12□□□□□ -1.43
CLN3-219ENST00000565778 KRTAP9-4Q9BYQ2 154 aa6.09□□□□□ -1.43
CLN3-219ENST00000565778 KRTAP4-11Q9BYQ6 195 aa6.09□□□□□ -1.43
CLN3-219ENST00000565778 KRTAP6-2Q3LI66 62 aa5.98□□□□□ -1.45
CLN3-219ENST00000565778 OBSCNQ5VST9 7968 aa5.89□□□□□ -1.47
CLN3-219ENST00000565778 KRTAP5-8O75690 187 aa5.87□□□□□ -1.47
CLN3-219ENST00000565778 MT3P25713 68 aa5.77□□□□□ -1.49
CLN3-219ENST00000565778 KRTAP9-9Q9BYP9 154 aa5.62□□□□□ -1.51
CLN3-219ENST00000565778 BRK1Q8WUW1 75 aa5.61□□□□□ -1.51
CLN3-219ENST00000565778 MUC5ACP98088 5654 aa5.57□□□□□ -1.52
CLN3-219ENST00000565778 AHNAKQ09666 5890 aaKnown RBP5.57□□□□□ -1.52
CLN3-219ENST00000565778 MUC5BQ9HC84 5762 aaPredicted RBP5.55□□□□□ -1.52
CLN3-219ENST00000565778 KRTAP5-1Q6L8H4 278 aa5.52□□□□□ -1.53
CLN3-219ENST00000565778 PMAIP1Q13794 54 aa5.29□□□□□ -1.56
CLN3-219ENST00000565778 LCE1EQ5T753 118 aa5.28□□□□□ -1.56
CLN3-219ENST00000565778 PRAC1Q96KF2 57 aa5.1□□□□□ -1.59
CLN3-219ENST00000565778 LCE1BQ5T7P3 118 aa5.03□□□□□ -1.6
CLN3-219ENST00000565778 KRTAP4-2Q9BYR5 136 aa4.97□□□□□ -1.61
CLN3-219ENST00000565778 LCE1CQ5T751 118 aa4.9□□□□□ -1.63
CLN3-219ENST00000565778 LCE3DQ9BYE3 92 aa4.73□□□□□ -1.65
CLN3-219ENST00000565778 PRO0628Q9UI54 55 aa4.73□□□□□ -1.65
CLN3-219ENST00000565778 KRTAP4-12Q9BQ66 201 aa4.58□□□□□ -1.68
CLN3-219ENST00000565778 KTN1-AS1Q86SY8 53 aa4.55□□□□□ -1.68
CLN3-219ENST00000565778 SVIPQ8NHG7 77 aa4.45□□□□□ -1.7
CLN3-219ENST00000565778 LCE3EQ5T5B0 92 aa4.44□□□□□ -1.7
CLN3-219ENST00000565778 KRTAP5-11Q6L8G4 156 aa4.42□□□□□ -1.7
CLN3-219ENST00000565778 KRTAP5-6Q6L8G9 129 aaPredicted RBP4.42□□□□□ -1.7
CLN3-219ENST00000565778 LUZP6Q538Z0 58 aa4.37□□□□□ -1.71
CLN3-219ENST00000565778 LCE1FQ5T754 118 aa4.33□□□□□ -1.72
CLN3-219ENST00000565778 KRTAP21-2Q3LI59 83 aa4.09□□□□□ -1.75
CLN3-219ENST00000565778 PHGR1C9JFL3 82 aa3.93□□□□□ -1.78
CLN3-219ENST00000565778 KRTAP4-4Q9BYR3 166 aa3.81□□□□□ -1.8
CLN3-219ENST00000565778 MUC19Q7Z5P9 8384 aa3.62□□□□□ -1.83
CLN3-219ENST00000565778 NDUFAF8A1L188 74 aa3.33□□□□□ -1.88
CLN3-219ENST00000565778 PRM1P04553 51 aa3.29□□□□□ -1.88
CLN3-219ENST00000565778 KRTAP21-1Q3LI58 79 aa2.98□□□□□ -1.93
CLN3-219ENST00000565778 INE1O15225 51 aa2.62□□□□□ -1.99
CLN3-219ENST00000565778 MUC16Q8WXI7 14507 aa2.59□□□□□ -2
CLN3-219ENST00000565778 A0A0A0MQY5 61 aa2.53□□□□□ -2
CLN3-219ENST00000565778 H3BS24 57 aa2.37□□□□□ -2.03
Retrieved 78 of 20,778 RNA–protein pairs in 182.1 ms