RNA–Protein interactions for RNA: ENST00000565511.5

RAB40C-209, Transcript of RAB40C, member RAS oncogene family, humanhuman

TSL 3

Gene RAB40C, Length 783 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RAB40C-209ENST00000565511 TNP1P09430 55 aa8.17□□□□□ -1.1
RAB40C-209ENST00000565511 KRTAP4-6Q9BYQ5 205 aa8.14□□□□□ -1.11
RAB40C-209ENST00000565511 KRTAP4-7Q9BYR0 210 aa8.11□□□□□ -1.11
RAB40C-209ENST00000565511 KRTAP5-10Q6L8G5 202 aa8.02□□□□□ -1.13
RAB40C-209ENST00000565511 ANAPC13Q9BS18 74 aa7.97□□□□□ -1.13
RAB40C-209ENST00000565511 KRTAP12-3P60328 96 aa7.96□□□□□ -1.14
RAB40C-209ENST00000565511 CCDC179H3BU77 68 aa7.93□□□□□ -1.14
RAB40C-209ENST00000565511 PRR15LQ9BU68 103 aa7.87□□□□□ -1.15
RAB40C-209ENST00000565511 LINC01558Q9Y6Z2 57 aa7.85□□□□□ -1.15
RAB40C-209ENST00000565511 KRTAP5-5Q701N2 237 aaPredicted RBP7.82□□□□□ -1.16
RAB40C-209ENST00000565511 KRTAP20-2Q3LI61 65 aa7.78□□□□□ -1.16
RAB40C-209ENST00000565511 KRTAP5-3Q6L8H2 238 aa7.77□□□□□ -1.17
RAB40C-209ENST00000565511 ATP5EP56381 51 aaPredicted RBP7.76□□□□□ -1.17
RAB40C-209ENST00000565511 KRTAP5-7Q6L8G8 165 aa7.71□□□□□ -1.18
RAB40C-209ENST00000565511 LOC100996750A0A140TA64 210 aa7.68□□□□□ -1.18
RAB40C-209ENST00000565511 SPRR5A0A1B0GTR4 108 aa7.65□□□□□ -1.18
RAB40C-209ENST00000565511 UQCR11O14957 56 aa7.64□□□□□ -1.19
RAB40C-209ENST00000565511 KRTAP25-1Q3LHN0 102 aa7.58□□□□□ -1.2
RAB40C-209ENST00000565511 KRTAP12-4P60329 112 aa7.54□□□□□ -1.2
RAB40C-209ENST00000565511 SYNE1Q8NF91 8797 aaKnown RBP7.53□□□□□ -1.2
RAB40C-209ENST00000565511 TMEM258P61165 79 aa7.49□□□□□ -1.21
RAB40C-209ENST00000565511 MIR22HGQ0VDD5 57 aa7.49□□□□□ -1.21
RAB40C-209ENST00000565511 KRTAP15-1Q3LI76 137 aa7.34□□□□□ -1.23
RAB40C-209ENST00000565511 KRTAP19-4Q3LI73 84 aa7.32□□□□□ -1.24
RAB40C-209ENST00000565511 LCE3CQ5T5A8 94 aa7.31□□□□□ -1.24
RAB40C-209ENST00000565511 K7ERS5 55 aa7.27□□□□□ -1.25
RAB40C-209ENST00000565511 KRTAP23-1A1A580 65 aa7.25□□□□□ -1.25
RAB40C-209ENST00000565511 PSPHP1O15172 72 aa7.25□□□□□ -1.25
RAB40C-209ENST00000565511 KRTAP6-1Q3LI64 71 aa7.19□□□□□ -1.26
RAB40C-209ENST00000565511 KRTAP5-2Q701N4 177 aa7.18□□□□□ -1.26
RAB40C-209ENST00000565511 MT1AP04731 61 aa7.16□□□□□ -1.26
RAB40C-209ENST00000565511 KRTAP4-11Q9BYQ6 195 aa7.13□□□□□ -1.27
RAB40C-209ENST00000565511 Q1T7F1 81 aa7.1□□□□□ -1.27
RAB40C-209ENST00000565511 V9GYY9 64 aa7.06□□□□□ -1.28
RAB40C-209ENST00000565511 KRTAP9-6A8MVA2 160 aa7.04□□□□□ -1.28
RAB40C-209ENST00000565511 KRTAP5-8O75690 187 aa6.94□□□□□ -1.3
RAB40C-209ENST00000565511 KRTAP9-4Q9BYQ2 154 aa6.93□□□□□ -1.3
RAB40C-209ENST00000565511 CDC42SE1Q9NRR8 79 aa6.93□□□□□ -1.3
RAB40C-209ENST00000565511 A6NED7 52 aa6.92□□□□□ -1.3
RAB40C-209ENST00000565511 PCP4P48539 62 aa6.91□□□□□ -1.3
RAB40C-209ENST00000565511 KRTAP6-2Q3LI66 62 aa6.89□□□□□ -1.31
RAB40C-209ENST00000565511 ROMO1P60602 79 aa6.84□□□□□ -1.31
RAB40C-209ENST00000565511 AHNAKQ09666 5890 aaKnown RBP6.81□□□□□ -1.32
RAB40C-209ENST00000565511 MUC5BQ9HC84 5762 aaPredicted RBP6.8□□□□□ -1.32
RAB40C-209ENST00000565511 RPS28P62857 69 aaKnown RBP6.78□□□□□ -1.32
RAB40C-209ENST00000565511 MUC5ACP98088 5654 aa6.76□□□□□ -1.33
RAB40C-209ENST00000565511 OBSCNQ5VST9 7968 aa6.69□□□□□ -1.34
RAB40C-209ENST00000565511 KRTAP9-9Q9BYP9 154 aa6.53□□□□□ -1.36
RAB40C-209ENST00000565511 MT3P25713 68 aa6.5□□□□□ -1.37
RAB40C-209ENST00000565511 KRTAP5-1Q6L8H4 278 aa6.49□□□□□ -1.37
RAB40C-209ENST00000565511 LCE1EQ5T753 118 aa6.03□□□□□ -1.44
RAB40C-209ENST00000565511 KRTAP4-2Q9BYR5 136 aa5.83□□□□□ -1.48
RAB40C-209ENST00000565511 BRK1Q8WUW1 75 aa5.76□□□□□ -1.49
RAB40C-209ENST00000565511 LCE1BQ5T7P3 118 aa5.75□□□□□ -1.49
RAB40C-209ENST00000565511 LCE1CQ5T751 118 aa5.61□□□□□ -1.51
RAB40C-209ENST00000565511 PRO0628Q9UI54 55 aa5.57□□□□□ -1.52
RAB40C-209ENST00000565511 PMAIP1Q13794 54 aa5.47□□□□□ -1.53
RAB40C-209ENST00000565511 KRTAP4-12Q9BQ66 201 aa5.38□□□□□ -1.55
RAB40C-209ENST00000565511 PRAC1Q96KF2 57 aa5.26□□□□□ -1.57
RAB40C-209ENST00000565511 KTN1-AS1Q86SY8 53 aa5.19□□□□□ -1.58
RAB40C-209ENST00000565511 LCE3DQ9BYE3 92 aa5.18□□□□□ -1.58
RAB40C-209ENST00000565511 KRTAP5-11Q6L8G4 156 aa5.13□□□□□ -1.59
RAB40C-209ENST00000565511 KRTAP5-6Q6L8G9 129 aaPredicted RBP5.09□□□□□ -1.59
RAB40C-209ENST00000565511 LCE1FQ5T754 118 aa4.97□□□□□ -1.61
RAB40C-209ENST00000565511 SVIPQ8NHG7 77 aa4.84□□□□□ -1.63
RAB40C-209ENST00000565511 LCE3EQ5T5B0 92 aa4.83□□□□□ -1.64
RAB40C-209ENST00000565511 KRTAP21-2Q3LI59 83 aa4.74□□□□□ -1.65
RAB40C-209ENST00000565511 PHGR1C9JFL3 82 aa4.65□□□□□ -1.67
RAB40C-209ENST00000565511 KRTAP4-4Q9BYR3 166 aa4.42□□□□□ -1.7
RAB40C-209ENST00000565511 LUZP6Q538Z0 58 aa4.3□□□□□ -1.72
RAB40C-209ENST00000565511 MUC19Q7Z5P9 8384 aa4.15□□□□□ -1.75
RAB40C-209ENST00000565511 NDUFAF8A1L188 74 aa3.91□□□□□ -1.78
RAB40C-209ENST00000565511 PRM1P04553 51 aa3.53□□□□□ -1.84
RAB40C-209ENST00000565511 KRTAP21-1Q3LI58 79 aa3.49□□□□□ -1.85
RAB40C-209ENST00000565511 A0A0A0MQY5 61 aa3.47□□□□□ -1.85
RAB40C-209ENST00000565511 H3BS24 57 aa3.45□□□□□ -1.86
RAB40C-209ENST00000565511 INE1O15225 51 aa3.34□□□□□ -1.87
RAB40C-209ENST00000565511 MUC16Q8WXI7 14507 aa2.99□□□□□ -1.93
Retrieved 78 of 20,778 RNA–protein pairs in 179.8 ms